RNA–Protein interactions for RNA: ENST00000553278.1

SCFD1-208, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 795 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-208ENST00000553278 RNPEPQ9H4A4 650 aa6.51□□□□□ -1.37
SCFD1-208ENST00000553278 BARX1Q9HBU1 254 aaPredicted RBP6.51□□□□□ -1.37
SCFD1-208ENST00000553278 PMF1-BGLAPU3KQ54 211 aa6.51□□□□□ -1.37
SCFD1-208ENST00000553278 LMTK3Q96Q04 1460 aa6.5□□□□□ -1.37
SCFD1-208ENST00000553278 PNMA6EA0A0J9YXQ4 647 aa6.5□□□□□ -1.37
SCFD1-208ENST00000553278 TBKBP1A7MCY6 615 aa6.5□□□□□ -1.37
SCFD1-208ENST00000553278 E9PLN8 166 aa6.5□□□□□ -1.37
SCFD1-208ENST00000553278 J3KTA2 159 aa6.5□□□□□ -1.37
SCFD1-208ENST00000553278 HOXA3O43365 443 aaPredicted RBP6.5□□□□□ -1.37
SCFD1-208ENST00000553278 PLOD3O60568 738 aa6.5□□□□□ -1.37
SCFD1-208ENST00000553278 PPP6R2O75170 966 aa6.5□□□□□ -1.37
SCFD1-208ENST00000553278 VPS4BO75351 444 aa6.5□□□□□ -1.37
SCFD1-208ENST00000553278 ZNF888P0CJ79 500 aaPredicted RBP6.5□□□□□ -1.37
SCFD1-208ENST00000553278 LRPAP1P30533 357 aa6.5□□□□□ -1.37
SCFD1-208ENST00000553278 CSF2RBP32927 897 aa6.5□□□□□ -1.37
SCFD1-208ENST00000553278 HOXD12P35452 270 aa6.5□□□□□ -1.37
SCFD1-208ENST00000553278 KRT20P35900 424 aa6.5□□□□□ -1.37
SCFD1-208ENST00000553278 PIGFQ07326 219 aa6.5□□□□□ -1.37
SCFD1-208ENST00000553278 ZNF568Q3ZCX4 644 aa6.5□□□□□ -1.37
SCFD1-208ENST00000553278 MANEALQ5VSG8 457 aa6.5□□□□□ -1.37
SCFD1-208ENST00000553278 FAM205BPQ63HN1 556 aa6.5□□□□□ -1.37
SCFD1-208ENST00000553278 CCDC129Q6ZRS4 1044 aa6.5□□□□□ -1.37
SCFD1-208ENST00000553278 ATG4DQ86TL0 474 aaPredicted RBP6.5□□□□□ -1.37
SCFD1-208ENST00000553278 ZSWIM9Q86XI8 627 aa6.5□□□□□ -1.37
SCFD1-208ENST00000553278 ABHD5Q8WTS1 349 aa6.5□□□□□ -1.37
SCFD1-208ENST00000553278 ZNF668Q96K58 619 aaPredicted RBP6.5□□□□□ -1.37
SCFD1-208ENST00000553278 YTHDC1Q96MU7 727 aaKnown RBP6.5□□□□□ -1.37
SCFD1-208ENST00000553278 SMOQ99835 787 aa6.5□□□□□ -1.37
SCFD1-208ENST00000553278 VKORC1Q9BQB6 163 aa6.5□□□□□ -1.37
SCFD1-208ENST00000553278 VPS16Q9H269 839 aa6.5□□□□□ -1.37
SCFD1-208ENST00000553278 ABHD16BQ9H3Z7 469 aa6.5□□□□□ -1.37
SCFD1-208ENST00000553278 ANKEF1Q9NU02 776 aa6.5□□□□□ -1.37
SCFD1-208ENST00000553278 DNMT3BQ9UBC3 853 aaKnown RBP6.5□□□□□ -1.37
SCFD1-208ENST00000553278 HDAC5Q9UQL6 1122 aa6.5□□□□□ -1.37
SCFD1-208ENST00000553278 TDRD9Q8NDG6 1382 aaKnown RBP6.49□□□□□ -1.37
SCFD1-208ENST00000553278 A0A1W2PRQ8 180 aa6.49□□□□□ -1.37
SCFD1-208ENST00000553278 PI4KAP2A4QPH2 592 aa6.49□□□□□ -1.37
SCFD1-208ENST00000553278 POLRMTO00411 1230 aaKnown RBP6.49□□□□□ -1.37
SCFD1-208ENST00000553278 ZSCAN9O15535 394 aaPredicted RBP6.49□□□□□ -1.37
SCFD1-208ENST00000553278 TFRCP02786 760 aaKnown RBP6.49□□□□□ -1.37
SCFD1-208ENST00000553278 CYP1A1P04798 512 aaPredicted RBP6.49□□□□□ -1.37
SCFD1-208ENST00000553278 FURINP09958 794 aa6.49□□□□□ -1.37
SCFD1-208ENST00000553278 ARP10275 920 aa6.49□□□□□ -1.37
SCFD1-208ENST00000553278 SERPINA4P29622 427 aa6.49□□□□□ -1.37
SCFD1-208ENST00000553278 POLD2P49005 469 aa6.49□□□□□ -1.37
SCFD1-208ENST00000553278 RBM5P52756 815 aaKnown RBP eCLIP6.49□□□□□ -1.37
SCFD1-208ENST00000553278 ARF3P61204 181 aaPredicted RBP6.49□□□□□ -1.37
SCFD1-208ENST00000553278 ARF1P84077 181 aaKnown RBP6.49□□□□□ -1.37
SCFD1-208ENST00000553278 GRM4Q14833 912 aa6.49□□□□□ -1.37
SCFD1-208ENST00000553278 SMAD1Q15797 465 aaKnown RBP6.49□□□□□ -1.37
SCFD1-208ENST00000553278 TSTQ16762 297 aaKnown RBP6.49□□□□□ -1.37
SCFD1-208ENST00000553278 CTXN3Q4LDR2 81 aa6.49□□□□□ -1.37
SCFD1-208ENST00000553278 CFAP58Q5T655 872 aa6.49□□□□□ -1.37
SCFD1-208ENST00000553278 ANKS6Q68DC2 871 aa6.49□□□□□ -1.37
SCFD1-208ENST00000553278 ABLIM2Q6H8Q1 611 aa6.49□□□□□ -1.37
SCFD1-208ENST00000553278 TMCO3Q6UWJ1 677 aa6.49□□□□□ -1.37
SCFD1-208ENST00000553278 MPZL3Q6UWV2 235 aa6.49□□□□□ -1.37
SCFD1-208ENST00000553278 ZSCAN2Q7Z7L9 614 aaPredicted RBP6.49□□□□□ -1.37
SCFD1-208ENST00000553278 ADGRE4PQ86SQ3 457 aa6.49□□□□□ -1.37
SCFD1-208ENST00000553278 ARMC8Q8IUR7 673 aa6.49□□□□□ -1.37
SCFD1-208ENST00000553278 KLHL36Q8N4N3 616 aa6.49□□□□□ -1.37
SCFD1-208ENST00000553278 LSMEM1Q8N8F7 131 aa6.49□□□□□ -1.37
SCFD1-208ENST00000553278 BPIFB1Q8TDL5 484 aa6.49□□□□□ -1.37
SCFD1-208ENST00000553278 TFAP2CQ92754 450 aa6.49□□□□□ -1.37
SCFD1-208ENST00000553278 RNF125Q96EQ8 232 aa6.49□□□□□ -1.37
SCFD1-208ENST00000553278 BORCS6Q96GS4 357 aa6.49□□□□□ -1.37
SCFD1-208ENST00000553278 TTPALQ9BTX7 342 aa6.49□□□□□ -1.37
SCFD1-208ENST00000553278 PDCL3Q9H2J4 239 aa6.49□□□□□ -1.37
SCFD1-208ENST00000553278 UNKLQ9H9P5 680 aaKnown RBP6.49□□□□□ -1.37
SCFD1-208ENST00000553278 NFU1Q9UMS0 254 aa6.49□□□□□ -1.37
SCFD1-208ENST00000553278 CYP46A1Q9Y6A2 500 aa6.49□□□□□ -1.37
SCFD1-208ENST00000553278 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa6.48□□□□□ -1.37
SCFD1-208ENST00000553278 TEX51A0A1B0GUA7 166 aa6.48□□□□□ -1.37
SCFD1-208ENST00000553278 UBE2QL1A1L167 161 aa6.48□□□□□ -1.37
SCFD1-208ENST00000553278 FAM90A18PA6NE21 464 aa6.48□□□□□ -1.37
SCFD1-208ENST00000553278 FAM90A16PA6NEW6 464 aa6.48□□□□□ -1.37
SCFD1-208ENST00000553278 FAM90A9PA6NNJ1 464 aa6.48□□□□□ -1.37
SCFD1-208ENST00000553278 FAM90A5PA8MXJ8 464 aa6.48□□□□□ -1.37
SCFD1-208ENST00000553278 B4DLN1 442 aa6.48□□□□□ -1.37
SCFD1-208ENST00000553278 FAM90A15PP0C7V4 464 aa6.48□□□□□ -1.37
SCFD1-208ENST00000553278 FAM90A14PP0C7W9 464 aa6.48□□□□□ -1.37
SCFD1-208ENST00000553278 PTMSP20962 102 aa6.48□□□□□ -1.37
SCFD1-208ENST00000553278 STAT1P42224 750 aa6.48□□□□□ -1.37
SCFD1-208ENST00000553278 CDK7P50613 346 aa6.48□□□□□ -1.37
SCFD1-208ENST00000553278 DLG4P78352 724 aa6.48□□□□□ -1.37
SCFD1-208ENST00000553278 NFYCQ13952 458 aa6.48□□□□□ -1.37
SCFD1-208ENST00000553278 ERV3-1Q14264 604 aa6.48□□□□□ -1.37
SCFD1-208ENST00000553278 TBR1Q16650 682 aa6.48□□□□□ -1.37
SCFD1-208ENST00000553278 MFSD4BQ5TF39 518 aa6.48□□□□□ -1.37
SCFD1-208ENST00000553278 NAA35Q5VZE5 725 aa6.48□□□□□ -1.37
SCFD1-208ENST00000553278 B4GALNT4Q76KP1 1039 aa6.48□□□□□ -1.37
SCFD1-208ENST00000553278 SYT13Q7L8C5 426 aa6.48□□□□□ -1.37
SCFD1-208ENST00000553278 ANKRD23Q86SG2 305 aa6.48□□□□□ -1.37
SCFD1-208ENST00000553278 CHD1LQ86WJ1 897 aa6.48□□□□□ -1.37
SCFD1-208ENST00000553278 TMEFF1Q8IYR6 380 aa6.48□□□□□ -1.37
SCFD1-208ENST00000553278 SPARTQ8N0X7 666 aa6.48□□□□□ -1.37
SCFD1-208ENST00000553278 TCF25Q9BQ70 676 aa6.48□□□□□ -1.37
SCFD1-208ENST00000553278 NUDT22Q9BRQ3 303 aa6.48□□□□□ -1.37
SCFD1-208ENST00000553278 ACAD9Q9H845 621 aa6.48□□□□□ -1.37
SCFD1-208ENST00000553278 MRPS18AQ9NVS2 196 aaKnown RBP6.48□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 96.1 ms