RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 DYDC1Q8WWB3 177 aa8.07□□□□□ -1.12
LIMA1-216ENST00000552909 NXF3Q9H4D5 531 aaKnown RBP8.07□□□□□ -1.12
LIMA1-216ENST00000552909 PARVGQ9HBI0 331 aa8.07□□□□□ -1.12
LIMA1-216ENST00000552909 DLGAP2Q9P1A6 1054 aa8.07□□□□□ -1.12
LIMA1-216ENST00000552909 NKX1-2Q9UD57 310 aaPredicted RBP8.07□□□□□ -1.12
LIMA1-216ENST00000552909 IPPQ9Y573 584 aa8.07□□□□□ -1.12
LIMA1-216ENST00000552909 H3BNC9 293 aa8.07□□□□□ -1.12
LIMA1-216ENST00000552909 K7ERI5 159 aa8.07□□□□□ -1.12
LIMA1-216ENST00000552909 ACKR2O00590 384 aa8.07□□□□□ -1.12
LIMA1-216ENST00000552909 GRM6O15303 877 aa8.07□□□□□ -1.12
LIMA1-216ENST00000552909 B4GALT3O60512 393 aa8.07□□□□□ -1.12
LIMA1-216ENST00000552909 GCNT3O95395 438 aa8.07□□□□□ -1.12
LIMA1-216ENST00000552909 GJB6O95452 261 aa8.07□□□□□ -1.12
LIMA1-216ENST00000552909 GSTA2P09210 222 aa8.07□□□□□ -1.12
LIMA1-216ENST00000552909 AKAP5P24588 427 aa8.07□□□□□ -1.12
LIMA1-216ENST00000552909 DNAJB1P25685 340 aa8.07□□□□□ -1.12
LIMA1-216ENST00000552909 NMT1P30419 496 aaKnown RBP8.07□□□□□ -1.12
LIMA1-216ENST00000552909 PEX5P50542 639 aa8.07□□□□□ -1.12
LIMA1-216ENST00000552909 PMS2P54278 862 aa8.07□□□□□ -1.12
LIMA1-216ENST00000552909 DMP1Q13316 513 aaPredicted RBP8.07□□□□□ -1.12
LIMA1-216ENST00000552909 GPM6BQ13491 265 aa8.07□□□□□ -1.12
LIMA1-216ENST00000552909 CAMK1Q14012 370 aa8.07□□□□□ -1.12
LIMA1-216ENST00000552909 SLC18A3Q16572 532 aa8.07□□□□□ -1.12
LIMA1-216ENST00000552909 FAM187BQ17R55 369 aa8.07□□□□□ -1.12
LIMA1-216ENST00000552909 C6orf118Q5T5N4 469 aa8.07□□□□□ -1.12
LIMA1-216ENST00000552909 RNF220Q5VTB9 566 aa8.07□□□□□ -1.12
LIMA1-216ENST00000552909 EEF1DP3Q658K8 133 aa8.07□□□□□ -1.12
LIMA1-216ENST00000552909 PPP4R3CPQ6ZMV5 832 aa8.07□□□□□ -1.12
LIMA1-216ENST00000552909 TAOK1Q7L7X3 1001 aa8.07□□□□□ -1.12
LIMA1-216ENST00000552909 MRPL10Q7Z7H8 261 aaKnown RBP8.07□□□□□ -1.12
LIMA1-216ENST00000552909 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP8.07□□□□□ -1.12
LIMA1-216ENST00000552909 DNAJC9Q8WXX5 260 aa8.07□□□□□ -1.12
LIMA1-216ENST00000552909 SYN2Q92777 582 aaPredicted RBP8.07□□□□□ -1.12
LIMA1-216ENST00000552909 NTPCRQ9BSD7 190 aaKnown RBP8.07□□□□□ -1.12
LIMA1-216ENST00000552909 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP8.07□□□□□ -1.12
LIMA1-216ENST00000552909 TXLNGYQ9BZA5 131 aa8.07□□□□□ -1.12
LIMA1-216ENST00000552909 TMEM117Q9H0C3 514 aa8.07□□□□□ -1.12
LIMA1-216ENST00000552909 CXCL16Q9H2A7 254 aa8.07□□□□□ -1.12
LIMA1-216ENST00000552909 PABPC3Q9H361 631 aaKnown RBP8.07□□□□□ -1.12
LIMA1-216ENST00000552909 PDZD7Q9H5P4 517 aa8.07□□□□□ -1.12
LIMA1-216ENST00000552909 SUDS3Q9H7L9 328 aaPredicted RBP8.07□□□□□ -1.12
LIMA1-216ENST00000552909 ETNK1Q9HBU6 452 aa8.07□□□□□ -1.12
LIMA1-216ENST00000552909 KMT5AQ9NQR1 393 aa8.07□□□□□ -1.12
LIMA1-216ENST00000552909 PRDM6Q9NQX0 595 aa8.07□□□□□ -1.12
LIMA1-216ENST00000552909 TXLNGQ9NUQ3 528 aa8.07□□□□□ -1.12
LIMA1-216ENST00000552909 PCMTD2Q9NV79 361 aa8.07□□□□□ -1.12
LIMA1-216ENST00000552909 FGFR1OP2Q9NVK5 253 aa8.07□□□□□ -1.12
LIMA1-216ENST00000552909 PRMT7Q9NVM4 692 aaPredicted RBP8.07□□□□□ -1.12
LIMA1-216ENST00000552909 ARHGAP28Q9P2N2 729 aa8.07□□□□□ -1.12
LIMA1-216ENST00000552909 SCOCQ9UIL1 159 aa8.07□□□□□ -1.12
LIMA1-216ENST00000552909 TRIM33Q9UPN9 1127 aa8.07□□□□□ -1.12
LIMA1-216ENST00000552909 INPP5FQ9Y2H2 1132 aa8.07□□□□□ -1.12
LIMA1-216ENST00000552909 TTC28Q96AY4 2481 aa8.06□□□□□ -1.12
LIMA1-216ENST00000552909 CNTNAP2Q9UHC6 1331 aa8.06□□□□□ -1.12
LIMA1-216ENST00000552909 SMIM23A6NLE4 172 aa8.06□□□□□ -1.12
LIMA1-216ENST00000552909 C5orf67F2Z3F1 127 aa8.06□□□□□ -1.12
LIMA1-216ENST00000552909 ZSCAN9O15535 394 aaPredicted RBP8.06□□□□□ -1.12
LIMA1-216ENST00000552909 FGFR1OPO95684 399 aaKnown RBP8.06□□□□□ -1.12
LIMA1-216ENST00000552909 ITGB1P05556 798 aa8.06□□□□□ -1.12
LIMA1-216ENST00000552909 TPBGLP0DKB5 382 aa8.06□□□□□ -1.12
LIMA1-216ENST00000552909 PLS3P13797 630 aa8.06□□□□□ -1.12
LIMA1-216ENST00000552909 AXLP30530 894 aa8.06□□□□□ -1.12
LIMA1-216ENST00000552909 IFI35P80217 286 aaPredicted RBP8.06□□□□□ -1.12
LIMA1-216ENST00000552909 PRPF4BQ13523 1007 aaKnown RBP8.06□□□□□ -1.12
LIMA1-216ENST00000552909 PCBP1Q15365 356 aaKnown RBP eCLIP8.06□□□□□ -1.12
LIMA1-216ENST00000552909 CNGA2Q16280 664 aa8.06□□□□□ -1.12
LIMA1-216ENST00000552909 PARP6Q2NL67 630 aa8.06□□□□□ -1.12
LIMA1-216ENST00000552909 ZC2HC1CQ53FD0 456 aaPredicted RBP8.06□□□□□ -1.12
LIMA1-216ENST00000552909 SPOUT1Q5T280 376 aaKnown RBP8.06□□□□□ -1.12
LIMA1-216ENST00000552909 IRGCQ6NXR0 463 aa8.06□□□□□ -1.12
LIMA1-216ENST00000552909 SLC27A1Q6PCB7 646 aa8.06□□□□□ -1.12
LIMA1-216ENST00000552909 ZNF720Q7Z2F6 126 aa8.06□□□□□ -1.12
LIMA1-216ENST00000552909 ZNF280BQ86YH2 543 aa8.06□□□□□ -1.12
LIMA1-216ENST00000552909 FAM178BQ8IXR5 827 aa8.06□□□□□ -1.12
LIMA1-216ENST00000552909 ABI1Q8IZP0 508 aa8.06□□□□□ -1.12
LIMA1-216ENST00000552909 FITM2Q8N6M3 262 aa8.06□□□□□ -1.12
LIMA1-216ENST00000552909 TMEM161BQ8NDZ6 487 aa8.06□□□□□ -1.12
LIMA1-216ENST00000552909 ZFP42Q96MM3 310 aa8.06□□□□□ -1.12
LIMA1-216ENST00000552909 APOL6Q9BWW8 343 aa8.06□□□□□ -1.12
LIMA1-216ENST00000552909 C2orf40Q9H1Z8 148 aa8.06□□□□□ -1.12
LIMA1-216ENST00000552909 MIOSQ9NXC5 875 aa8.06□□□□□ -1.12
LIMA1-216ENST00000552909 CEP72Q9P209 647 aa8.06□□□□□ -1.12
LIMA1-216ENST00000552909 CUL9Q8IWT3 2517 aa8.06□□□□□ -1.12
LIMA1-216ENST00000552909 RALGAPA2Q2PPJ7 1873 aa8.06□□□□□ -1.12
LIMA1-216ENST00000552909 TRIP11Q15643 1979 aa8.06□□□□□ -1.12
LIMA1-216ENST00000552909 PLXNA4Q9HCM2 1894 aa8.06□□□□□ -1.12
LIMA1-216ENST00000552909 BTNL10A8MVZ5 291 aa8.05□□□□□ -1.12
LIMA1-216ENST00000552909 TCP11X1B4DZS4 312 aa8.05□□□□□ -1.12
LIMA1-216ENST00000552909 NT5C1B-RDH14C9J2C7 533 aa8.05□□□□□ -1.12
LIMA1-216ENST00000552909 PEX11AO75192 247 aa8.05□□□□□ -1.12
LIMA1-216ENST00000552909 UNC5CO95185 931 aa8.05□□□□□ -1.12
LIMA1-216ENST00000552909 POU3F3P20264 500 aaPredicted RBP8.05□□□□□ -1.12
LIMA1-216ENST00000552909 HOXD13P35453 343 aa8.05□□□□□ -1.12
LIMA1-216ENST00000552909 EFNA5P52803 228 aa8.05□□□□□ -1.12
LIMA1-216ENST00000552909 KCNA1Q09470 495 aa8.05□□□□□ -1.12
LIMA1-216ENST00000552909 MUM1Q2TAK8 710 aa8.05□□□□□ -1.12
LIMA1-216ENST00000552909 OR52E8Q6IFG1 317 aa8.05□□□□□ -1.12
LIMA1-216ENST00000552909 EPM2AIP1Q7L775 607 aaPredicted RBP8.05□□□□□ -1.12
LIMA1-216ENST00000552909 GSTCDQ8NEC7 633 aa8.05□□□□□ -1.12
LIMA1-216ENST00000552909 MIPOL1Q8TD10 442 aa8.05□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms