RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 TOM1L1O75674 476 aa15.74■□□□□ 0.11
USP28-214ENST00000545540 HOXC6P09630 235 aa15.74■□□□□ 0.11
USP28-214ENST00000545540 ARL4CP56559 192 aa15.74■□□□□ 0.11
USP28-214ENST00000545540 BZW1Q7L1Q6 419 aaKnown RBP15.74■□□□□ 0.11
USP28-214ENST00000545540 AGGF1Q8N302 714 aaeCLIP15.74■□□□□ 0.11
USP28-214ENST00000545540 ACO2Q99798 780 aaKnown RBP15.74■□□□□ 0.11
USP28-214ENST00000545540 XYLT2Q9H1B5 865 aa15.74■□□□□ 0.11
USP28-214ENST00000545540 STARD13Q9Y3M8 1113 aa15.74■□□□□ 0.11
USP28-214ENST00000545540 MYO18AQ92614 2054 aaKnown RBP15.74■□□□□ 0.11
USP28-214ENST00000545540 FAM237BA0A1B0GVD1 139 aa15.74■□□□□ 0.11
USP28-214ENST00000545540 CXorf49A8MYA2 514 aaPredicted RBP15.74■□□□□ 0.11
USP28-214ENST00000545540 NFKBIEO00221 500 aa15.74■□□□□ 0.11
USP28-214ENST00000545540 HCRTO43612 131 aa15.74■□□□□ 0.11
USP28-214ENST00000545540 FAM189A1O60320 539 aa15.74■□□□□ 0.11
USP28-214ENST00000545540 MT-ND3P03897 115 aa15.74■□□□□ 0.11
USP28-214ENST00000545540 ATXN1P54253 815 aaKnown RBP15.74■□□□□ 0.11
USP28-214ENST00000545540 PIGHQ14442 188 aaPredicted RBP15.74■□□□□ 0.11
USP28-214ENST00000545540 AMHR2Q16671 573 aa15.74■□□□□ 0.11
USP28-214ENST00000545540 CATSPERGQ6ZRH7 1159 aa15.74■□□□□ 0.11
USP28-214ENST00000545540 MIPEPQ99797 713 aa15.74■□□□□ 0.11
USP28-214ENST00000545540 PCDH9Q9HC56 1237 aa15.74■□□□□ 0.11
USP28-214ENST00000545540 NGRNQ9NPE2 291 aaKnown RBP15.74■□□□□ 0.11
USP28-214ENST00000545540 RAB6BQ9NRW1 208 aa15.74■□□□□ 0.11
USP28-214ENST00000545540 MAP3K20Q9NYL2 800 aaKnown RBP15.74■□□□□ 0.11
USP28-214ENST00000545540 LPXNO60711 386 aa15.74■□□□□ 0.11
USP28-214ENST00000545540 CCNB1P14635 433 aa15.74■□□□□ 0.11
USP28-214ENST00000545540 CCND1P24385 295 aa15.74■□□□□ 0.11
USP28-214ENST00000545540 RTP1P59025 263 aa15.74■□□□□ 0.11
USP28-214ENST00000545540 PTK7Q13308 1070 aa15.74■□□□□ 0.11
USP28-214ENST00000545540 RIPK1Q13546 671 aa15.74■□□□□ 0.11
USP28-214ENST00000545540 SGSM1Q2NKQ1 1148 aa15.74■□□□□ 0.11
USP28-214ENST00000545540 PPP1R15BQ5SWA1 713 aa15.74■□□□□ 0.11
USP28-214ENST00000545540 PPIL6Q8IXY8 311 aa15.74■□□□□ 0.11
USP28-214ENST00000545540 UNC5BQ8IZJ1 945 aa15.74■□□□□ 0.11
USP28-214ENST00000545540 NAT8LQ8N9F0 302 aa15.74■□□□□ 0.11
USP28-214ENST00000545540 PLCD4Q9BRC7 762 aa15.74■□□□□ 0.11
USP28-214ENST00000545540 MRPL4Q9BYD3 311 aaKnown RBP15.74■□□□□ 0.11
USP28-214ENST00000545540 TCRBV9S1A1TA0A576 114 aa15.73■□□□□ 0.11
USP28-214ENST00000545540 SOWAHBA6NEL2 793 aa15.73■□□□□ 0.11
USP28-214ENST00000545540 NOP56O00567 594 aaKnown RBP15.73■□□□□ 0.11
USP28-214ENST00000545540 ITGAVP06756 1048 aa15.73■□□□□ 0.11
USP28-214ENST00000545540 ALDH3A1P30838 453 aa15.73■□□□□ 0.11
USP28-214ENST00000545540 OR6B2Q6IFH4 312 aa15.73■□□□□ 0.11
USP28-214ENST00000545540 TRNP1Q6NT89 227 aa15.73■□□□□ 0.11
USP28-214ENST00000545540 ZCCHC23Q6ZST2 131 aa15.73■□□□□ 0.11
USP28-214ENST00000545540 PDIK1LQ8N165 341 aa15.73■□□□□ 0.11
USP28-214ENST00000545540 MAGEC3Q8TD91 643 aa15.73■□□□□ 0.11
USP28-214ENST00000545540 CDHR1Q96JP9 859 aa15.73■□□□□ 0.11
USP28-214ENST00000545540 ELOVL4Q9GZR5 314 aa15.73■□□□□ 0.11
USP28-214ENST00000545540 MANSC1Q9H8J5 431 aa15.73■□□□□ 0.11
USP28-214ENST00000545540 NRBP2Q9NSY0 501 aa15.73■□□□□ 0.11
USP28-214ENST00000545540 TXLNGQ9NUQ3 528 aa15.73■□□□□ 0.11
USP28-214ENST00000545540 GGA3Q9NZ52 723 aa15.73■□□□□ 0.11
USP28-214ENST00000545540 IL1RAPL1Q9NZN1 696 aa15.73■□□□□ 0.11
USP28-214ENST00000545540 USP18Q9UMW8 372 aa15.73■□□□□ 0.11
USP28-214ENST00000545540 FARP1Q9Y4F1 1045 aaPredicted RBP15.73■□□□□ 0.11
USP28-214ENST00000545540 APRTP07741 180 aa15.73■□□□□ 0.11
USP28-214ENST00000545540 PHKA2P46019 1235 aa15.73■□□□□ 0.11
USP28-214ENST00000545540 CRADDP78560 199 aa15.73■□□□□ 0.11
USP28-214ENST00000545540 MKRN3Q13064 507 aaKnown RBP15.73■□□□□ 0.11
USP28-214ENST00000545540 DPYSL3Q14195 570 aa15.73■□□□□ 0.11
USP28-214ENST00000545540 KHDC1Q4VXA5 237 aaKnown RBP15.73■□□□□ 0.11
USP28-214ENST00000545540 BSPRYQ5W0U4 402 aa15.73■□□□□ 0.11
USP28-214ENST00000545540 ALYREFQ86V81 257 aaKnown RBP15.73■□□□□ 0.11
USP28-214ENST00000545540 FBXO16Q8IX29 292 aaPredicted RBP15.73■□□□□ 0.11
USP28-214ENST00000545540 FBXO27Q8NI29 283 aa15.73■□□□□ 0.11
USP28-214ENST00000545540 FAF2Q96CS3 445 aa15.73■□□□□ 0.11
USP28-214ENST00000545540 CEP41Q9BYV8 373 aa15.73■□□□□ 0.11
USP28-214ENST00000545540 MIS12Q9H081 205 aa15.73■□□□□ 0.11
USP28-214ENST00000545540 FAM49BQ9NUQ9 324 aa15.73■□□□□ 0.11
USP28-214ENST00000545540 SIX4Q9UIU6 781 aa15.73■□□□□ 0.11
USP28-214ENST00000545540 MAGED2Q9UNF1 606 aaPredicted RBP15.73■□□□□ 0.11
USP28-214ENST00000545540 SNCAIPQ9Y6H5 919 aa15.73■□□□□ 0.11
USP28-214ENST00000545540 IKBKGQ9Y6K9 419 aa15.73■□□□□ 0.11
USP28-214ENST00000545540 WDR81Q562E7 1941 aa15.73■□□□□ 0.11
USP28-214ENST00000545540 GPR25O00155 361 aa15.72■□□□□ 0.11
USP28-214ENST00000545540 OGTO15294 1046 aa15.72■□□□□ 0.11
USP28-214ENST00000545540 ABHD2P08910 425 aa15.72■□□□□ 0.11
USP28-214ENST00000545540 TFE3P19532 575 aaPredicted RBP15.72■□□□□ 0.11
USP28-214ENST00000545540 GRIA1P42261 906 aa15.72■□□□□ 0.11
USP28-214ENST00000545540 MAP1SQ66K74 1059 aaPredicted RBP15.72■□□□□ 0.11
USP28-214ENST00000545540 GADL1Q6ZQY3 521 aa15.72■□□□□ 0.11
USP28-214ENST00000545540 MOB2Q70IA6 237 aa15.72■□□□□ 0.11
USP28-214ENST00000545540 ATP11CQ8NB49 1132 aa15.72■□□□□ 0.11
USP28-214ENST00000545540 CCDC110Q8TBZ0 833 aa15.72■□□□□ 0.11
USP28-214ENST00000545540 SPDL1Q96EA4 605 aa15.72■□□□□ 0.11
USP28-214ENST00000545540 TTC25Q96NG3 672 aa15.72■□□□□ 0.11
USP28-214ENST00000545540 ACAP3Q96P50 834 aa15.72■□□□□ 0.11
USP28-214ENST00000545540 B3GNT5Q9BYG0 378 aa15.72■□□□□ 0.11
USP28-214ENST00000545540 PDGFCQ9NRA1 345 aa15.72■□□□□ 0.11
USP28-214ENST00000545540 PIM2Q9P1W9 311 aa15.72■□□□□ 0.11
USP28-214ENST00000545540 H0YCG3 227 aa15.72■□□□□ 0.11
USP28-214ENST00000545540 KCNN4O15554 427 aa15.72■□□□□ 0.11
USP28-214ENST00000545540 PEX11AO75192 247 aa15.72■□□□□ 0.11
USP28-214ENST00000545540 ABL2P42684 1182 aa15.72■□□□□ 0.11
USP28-214ENST00000545540 YARSP54577 528 aaKnown RBP15.72■□□□□ 0.11
USP28-214ENST00000545540 CLNKQ7Z7G1 428 aa15.72■□□□□ 0.11
USP28-214ENST00000545540 XYLT1Q86Y38 959 aa15.72■□□□□ 0.11
USP28-214ENST00000545540 WDR49Q8IV35 697 aa15.72■□□□□ 0.11
USP28-214ENST00000545540 TEX2Q8IWB9 1127 aa15.72■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms