RNA–Protein interactions for RNA: ENST00000543766.2

VPS13D-212, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2 BASIC

Gene VPS13D, Length 3,838 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-212ENST00000543766 NRSN1Q8IZ57 195 aa9.26□□□□□ -0.93
VPS13D-212ENST00000543766 ARHGAP24Q8N264 748 aa9.26□□□□□ -0.93
VPS13D-212ENST00000543766 CNTD1Q8N815 330 aa9.26□□□□□ -0.93
VPS13D-212ENST00000543766 NOL6Q9H6R4 1146 aaKnown RBP9.26□□□□□ -0.93
VPS13D-212ENST00000543766 STIM2Q9P246 746 aa9.26□□□□□ -0.93
VPS13D-212ENST00000543766 PI4KBQ9UBF8 816 aa9.26□□□□□ -0.93
VPS13D-212ENST00000543766 TRPM3Q9HCF6 1732 aaPredicted RBP9.26□□□□□ -0.93
VPS13D-212ENST00000543766 WNK3Q9BYP7 1800 aa9.25□□□□□ -0.93
VPS13D-212ENST00000543766 PNMA6EA0A0J9YXQ4 647 aa9.25□□□□□ -0.93
VPS13D-212ENST00000543766 A0A1W2PQ27 194 aa9.25□□□□□ -0.93
VPS13D-212ENST00000543766 A0A1W2PQ64 194 aa9.25□□□□□ -0.93
VPS13D-212ENST00000543766 A0A1W2PQD8 194 aa9.25□□□□□ -0.93
VPS13D-212ENST00000543766 SRRM3A6NNA2 597 aaPredicted RBP9.25□□□□□ -0.93
VPS13D-212ENST00000543766 PMM2O15305 246 aa9.25□□□□□ -0.93
VPS13D-212ENST00000543766 SCAF4O95104 1147 aaKnown RBP9.25□□□□□ -0.93
VPS13D-212ENST00000543766 XPAP23025 273 aaPredicted RBP9.25□□□□□ -0.93
VPS13D-212ENST00000543766 EXOSC10Q01780 885 aaKnown RBP9.25□□□□□ -0.93
VPS13D-212ENST00000543766 DHX9Q08211 1270 aaKnown RBP9.25□□□□□ -0.93
VPS13D-212ENST00000543766 MAPRE2Q15555 327 aa9.25□□□□□ -0.93
VPS13D-212ENST00000543766 BCL2A1Q16548 175 aa9.25□□□□□ -0.93
VPS13D-212ENST00000543766 ZNF674Q2M3X9 581 aa9.25□□□□□ -0.93
VPS13D-212ENST00000543766 SHEQ5VZ18 495 aa9.25□□□□□ -0.93
VPS13D-212ENST00000543766 ARMC6Q6NXE6 501 aa9.25□□□□□ -0.93
VPS13D-212ENST00000543766 METTL21AQ8WXB1 218 aa9.25□□□□□ -0.93
VPS13D-212ENST00000543766 CEP170P1Q96L14 293 aa9.25□□□□□ -0.93
VPS13D-212ENST00000543766 CCDC138Q96M89 665 aa9.25□□□□□ -0.93
VPS13D-212ENST00000543766 NUDT12Q9BQG2 462 aa9.25□□□□□ -0.93
VPS13D-212ENST00000543766 PSD2Q9BQI7 771 aa9.25□□□□□ -0.93
VPS13D-212ENST00000543766 CENPKQ9BS16 269 aa9.25□□□□□ -0.93
VPS13D-212ENST00000543766 YIPF4Q9BSR8 244 aa9.25□□□□□ -0.93
VPS13D-212ENST00000543766 TMEM245Q9H330 911 aa9.25□□□□□ -0.93
VPS13D-212ENST00000543766 GORASP2Q9H8Y8 452 aa9.25□□□□□ -0.93
VPS13D-212ENST00000543766 ZDHHC4Q9NPG8 344 aa9.25□□□□□ -0.93
VPS13D-212ENST00000543766 UBN2Q6ZU65 1347 aa9.25□□□□□ -0.93
VPS13D-212ENST00000543766 TMEM114B3SHH9 223 aa9.25□□□□□ -0.93
VPS13D-212ENST00000543766 KRT8P05787 483 aa9.25□□□□□ -0.93
VPS13D-212ENST00000543766 UBTFL1P0CB47 393 aaPredicted RBP9.25□□□□□ -0.93
VPS13D-212ENST00000543766 XRCC5P13010 732 aaKnown RBP9.25□□□□□ -0.93
VPS13D-212ENST00000543766 POU3F3P20264 500 aaPredicted RBP9.25□□□□□ -0.93
VPS13D-212ENST00000543766 GGCXP38435 758 aa9.25□□□□□ -0.93
VPS13D-212ENST00000543766 ABCG1P45844 678 aa9.25□□□□□ -0.93
VPS13D-212ENST00000543766 DCTN2Q13561 401 aaKnown RBP9.25□□□□□ -0.93
VPS13D-212ENST00000543766 STARD3Q14849 445 aa9.25□□□□□ -0.93
VPS13D-212ENST00000543766 FBXO48Q5FWF7 155 aa9.25□□□□□ -0.93
VPS13D-212ENST00000543766 RNASEH2BQ5TBB1 312 aaKnown RBP9.25□□□□□ -0.93
VPS13D-212ENST00000543766 C1orf146Q5VVC0 180 aa9.25□□□□□ -0.93
VPS13D-212ENST00000543766 MACC1Q6ZN28 852 aa9.25□□□□□ -0.93
VPS13D-212ENST00000543766 METTL23Q86XA0 190 aa9.25□□□□□ -0.93
VPS13D-212ENST00000543766 BBS7Q8IWZ6 715 aa9.25□□□□□ -0.93
VPS13D-212ENST00000543766 ZNF579Q8NAF0 562 aaKnown RBP9.25□□□□□ -0.93
VPS13D-212ENST00000543766 LEMD2Q8NC56 503 aa9.25□□□□□ -0.93
VPS13D-212ENST00000543766 DENND1AQ8TEH3 1009 aa9.25□□□□□ -0.93
VPS13D-212ENST00000543766 GRAMD1AQ96CP6 724 aa9.25□□□□□ -0.93
VPS13D-212ENST00000543766 PPP1R10Q96QC0 940 aaKnown RBP9.25□□□□□ -0.93
VPS13D-212ENST00000543766 ZCCHC2Q9C0B9 1178 aaKnown RBP9.25□□□□□ -0.93
VPS13D-212ENST00000543766 ARMC7Q9H6L4 198 aa9.25□□□□□ -0.93
VPS13D-212ENST00000543766 FAM105AQ9NUU6 356 aa9.25□□□□□ -0.93
VPS13D-212ENST00000543766 VPS4AQ9UN37 437 aa9.25□□□□□ -0.93
VPS13D-212ENST00000543766 ARHGAP26Q9UNA1 814 aa9.25□□□□□ -0.93
VPS13D-212ENST00000543766 PACSIN2Q9UNF0 486 aaPredicted RBP9.25□□□□□ -0.93
VPS13D-212ENST00000543766 MAP3K5Q99683 1374 aa9.25□□□□□ -0.93
VPS13D-212ENST00000543766 ECE2O60344 883 aa9.25□□□□□ -0.93
VPS13D-212ENST00000543766 CNOT3O75175 753 aaKnown RBP9.25□□□□□ -0.93
VPS13D-212ENST00000543766 ASLP04424 464 aa9.25□□□□□ -0.93
VPS13D-212ENST00000543766 NFICP08651 508 aa9.25□□□□□ -0.93
VPS13D-212ENST00000543766 KRT6CP48668 564 aa9.25□□□□□ -0.93
VPS13D-212ENST00000543766 CACNA2D1P54289 1103 aa9.25□□□□□ -0.93
VPS13D-212ENST00000543766 CCDC6Q16204 474 aa9.25□□□□□ -0.93
VPS13D-212ENST00000543766 TRPM8Q7Z2W7 1104 aa9.25□□□□□ -0.93
VPS13D-212ENST00000543766 RALYLQ86SE5 291 aaKnown RBP9.25□□□□□ -0.93
VPS13D-212ENST00000543766 TTC29Q8NA56 475 aaPredicted RBP9.25□□□□□ -0.93
VPS13D-212ENST00000543766 USP13Q92995 863 aaPredicted RBP9.25□□□□□ -0.93
VPS13D-212ENST00000543766 GMCL1Q96IK5 515 aa9.25□□□□□ -0.93
VPS13D-212ENST00000543766 EMILIN2Q9BXX0 1053 aa9.25□□□□□ -0.93
VPS13D-212ENST00000543766 LRRC2Q9BYS8 371 aa9.25□□□□□ -0.93
VPS13D-212ENST00000543766 EHD3Q9NZN3 535 aa9.25□□□□□ -0.93
VPS13D-212ENST00000543766 RNF24Q9Y225 148 aa9.25□□□□□ -0.93
VPS13D-212ENST00000543766 GPR75-ASB3A0A0A6YYF3 556 aa9.24□□□□□ -0.93
VPS13D-212ENST00000543766 RRN3P2A6NIE6 340 aa9.24□□□□□ -0.93
VPS13D-212ENST00000543766 A6NNZ2 444 aa9.24□□□□□ -0.93
VPS13D-212ENST00000543766 FGRP09769 529 aa9.24□□□□□ -0.93
VPS13D-212ENST00000543766 POLR2CP19387 275 aaPredicted RBP9.24□□□□□ -0.93
VPS13D-212ENST00000543766 IARSP41252 1262 aaKnown RBP9.24□□□□□ -0.93
VPS13D-212ENST00000543766 CRKP46108 304 aa9.24□□□□□ -0.93
VPS13D-212ENST00000543766 USP14P54578 494 aa9.24□□□□□ -0.93
VPS13D-212ENST00000543766 ZMYND11Q15326 602 aa9.24□□□□□ -0.93
VPS13D-212ENST00000543766 CNPY1Q3B7I2 92 aa9.24□□□□□ -0.93
VPS13D-212ENST00000543766 ETFRF1Q6IPR1 90 aa9.24□□□□□ -0.93
VPS13D-212ENST00000543766 ANO7Q6IWH7 933 aa9.24□□□□□ -0.93
VPS13D-212ENST00000543766 USP43Q70EL4 1123 aa9.24□□□□□ -0.93
VPS13D-212ENST00000543766 GPR141Q7Z602 305 aa9.24□□□□□ -0.93
VPS13D-212ENST00000543766 SSH3Q8TE77 659 aa9.24□□□□□ -0.93
VPS13D-212ENST00000543766 CCDC12Q8WUD4 166 aaPredicted RBP9.24□□□□□ -0.93
VPS13D-212ENST00000543766 RELTQ969Z4 430 aa9.24□□□□□ -0.93
VPS13D-212ENST00000543766 ADAD1Q96M93 576 aaKnown RBP9.24□□□□□ -0.93
VPS13D-212ENST00000543766 C12orf10Q9HB07 376 aa9.24□□□□□ -0.93
VPS13D-212ENST00000543766 NCOA5Q9HCD5 579 aaKnown RBP9.24□□□□□ -0.93
VPS13D-212ENST00000543766 SAMD15Q9P1V8 674 aa9.24□□□□□ -0.93
VPS13D-212ENST00000543766 TUBE1Q9UJT0 475 aa9.24□□□□□ -0.93
VPS13D-212ENST00000543766 VPS28Q9UK41 221 aa9.24□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms