RNA–Protein interactions for RNA: ENST00000537408.1

CLSTN3-207, Transcript of calsyntenin 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,296 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-207ENST00000537408 RAB26Q9ULW5 256 aa11.34□□□□□ -0.59
CLSTN3-207ENST00000537408 RBMX2Q9Y388 322 aaKnown RBP11.34□□□□□ -0.59
CLSTN3-207ENST00000537408 FLT1P17948 1338 aa11.34□□□□□ -0.59
CLSTN3-207ENST00000537408 LAD1O00515 517 aa11.34□□□□□ -0.59
CLSTN3-207ENST00000537408 KPNA4O00629 521 aaPredicted RBP11.34□□□□□ -0.59
CLSTN3-207ENST00000537408 ITM2AO43736 263 aa11.34□□□□□ -0.59
CLSTN3-207ENST00000537408 PCSK6P29122 969 aa11.34□□□□□ -0.59
CLSTN3-207ENST00000537408 TUFMP49411 452 aaKnown RBP11.34□□□□□ -0.59
CLSTN3-207ENST00000537408 MAPK6Q16659 721 aa11.34□□□□□ -0.59
CLSTN3-207ENST00000537408 NAALADL2Q58DX5 795 aa11.34□□□□□ -0.59
CLSTN3-207ENST00000537408 SPRYD7Q5W111 196 aa11.34□□□□□ -0.59
CLSTN3-207ENST00000537408 LVRNQ6Q4G3 990 aa11.34□□□□□ -0.59
CLSTN3-207ENST00000537408 CCDC89Q8N998 374 aa11.34□□□□□ -0.59
CLSTN3-207ENST00000537408 TSSK1BQ9BXA7 367 aa11.34□□□□□ -0.59
CLSTN3-207ENST00000537408 KLHL25Q9H0H3 589 aa11.34□□□□□ -0.59
CLSTN3-207ENST00000537408 TTC34A8MYJ7 566 aa11.34□□□□□ -0.59
CLSTN3-207ENST00000537408 FOXO6A8MYZ6 492 aa11.34□□□□□ -0.59
CLSTN3-207ENST00000537408 H3BNX3 289 aa11.34□□□□□ -0.59
CLSTN3-207ENST00000537408 PABPC1P11940 636 aaKnown RBP11.34□□□□□ -0.59
CLSTN3-207ENST00000537408 CIITAP33076 1130 aa11.34□□□□□ -0.59
CLSTN3-207ENST00000537408 PIK3CAP42336 1068 aa11.34□□□□□ -0.59
CLSTN3-207ENST00000537408 ADCY7P51828 1080 aa11.34□□□□□ -0.59
CLSTN3-207ENST00000537408 RHBDL3P58872 404 aa11.34□□□□□ -0.59
CLSTN3-207ENST00000537408 CTTNQ14247 550 aaKnown RBP11.34□□□□□ -0.59
CLSTN3-207ENST00000537408 COG2Q14746 738 aa11.34□□□□□ -0.59
CLSTN3-207ENST00000537408 UBAP2Q5T6F2 1119 aaKnown RBP11.34□□□□□ -0.59
CLSTN3-207ENST00000537408 KRT79Q5XKE5 535 aa11.34□□□□□ -0.59
CLSTN3-207ENST00000537408 RHOT2Q8IXI1 618 aa11.34□□□□□ -0.59
CLSTN3-207ENST00000537408 CERS5Q8N5B7 392 aa11.34□□□□□ -0.59
CLSTN3-207ENST00000537408 SLC25A41Q8N5S1 370 aa11.34□□□□□ -0.59
CLSTN3-207ENST00000537408 PYDC1Q8WXC3 89 aa11.34□□□□□ -0.59
CLSTN3-207ENST00000537408 SQORQ9Y6N5 450 aa11.34□□□□□ -0.59
CLSTN3-207ENST00000537408 DDX3YO15523 660 aaKnown RBP11.33□□□□□ -0.6
CLSTN3-207ENST00000537408 GMNNO75496 209 aa11.33□□□□□ -0.6
CLSTN3-207ENST00000537408 PEX2P28328 305 aa11.33□□□□□ -0.6
CLSTN3-207ENST00000537408 STT3AP46977 705 aa11.33□□□□□ -0.6
CLSTN3-207ENST00000537408 HTRA3P83110 453 aa11.33□□□□□ -0.6
CLSTN3-207ENST00000537408 KRT76Q01546 638 aa11.33□□□□□ -0.6
CLSTN3-207ENST00000537408 NFIAQ12857 509 aa11.33□□□□□ -0.6
CLSTN3-207ENST00000537408 OVGP1Q12889 678 aa11.33□□□□□ -0.6
CLSTN3-207ENST00000537408 VGLL4Q14135 290 aa11.33□□□□□ -0.6
CLSTN3-207ENST00000537408 IL17AQ16552 155 aa11.33□□□□□ -0.6
CLSTN3-207ENST00000537408 CCSAPQ6IQ19 270 aaPredicted RBP11.33□□□□□ -0.6
CLSTN3-207ENST00000537408 SLC44A5Q8NCS7 719 aa11.33□□□□□ -0.6
CLSTN3-207ENST00000537408 OXNAD1Q96HP4 312 aaPredicted RBP11.33□□□□□ -0.6
CLSTN3-207ENST00000537408 ARIH1Q9Y4X5 557 aaPredicted RBP11.33□□□□□ -0.6
CLSTN3-207ENST00000537408 SNX9Q9Y5X1 595 aa11.33□□□□□ -0.6
CLSTN3-207ENST00000537408 PDHXO00330 501 aa11.33□□□□□ -0.6
CLSTN3-207ENST00000537408 DENRO43583 198 aaKnown RBP11.33□□□□□ -0.6
CLSTN3-207ENST00000537408 ZBTB11O95625 1053 aaPredicted RBP11.33□□□□□ -0.6
CLSTN3-207ENST00000537408 CAP2P40123 477 aa11.33□□□□□ -0.6
CLSTN3-207ENST00000537408 GPATCH4Q5T3I0 446 aaKnown RBP11.33□□□□□ -0.6
CLSTN3-207ENST00000537408 EGFLAMQ63HQ2 1017 aa11.33□□□□□ -0.6
CLSTN3-207ENST00000537408 KYAT3Q6YP21 454 aaKnown RBP11.33□□□□□ -0.6
CLSTN3-207ENST00000537408 BPHLQ86WA6 291 aaPredicted RBP11.33□□□□□ -0.6
CLSTN3-207ENST00000537408 MCF2L2Q86YR7 1114 aa11.33□□□□□ -0.6
CLSTN3-207ENST00000537408 EHD1Q9H4M9 534 aa11.33□□□□□ -0.6
CLSTN3-207ENST00000537408 PSTPIP2Q9H939 334 aa11.33□□□□□ -0.6
CLSTN3-207ENST00000537408 NINJ2Q9NZG7 142 aa11.33□□□□□ -0.6
CLSTN3-207ENST00000537408 PPARGC1AQ9UBK2 798 aaKnown RBP11.33□□□□□ -0.6
CLSTN3-207ENST00000537408 GNPTGQ9UJJ9 305 aa11.33□□□□□ -0.6
CLSTN3-207ENST00000537408 CEPT1Q9Y6K0 416 aa11.33□□□□□ -0.6
CLSTN3-207ENST00000537408 MYH6P13533 1939 aa11.33□□□□□ -0.6
CLSTN3-207ENST00000537408 PVALEFA0A1B0GWK0 134 aa11.33□□□□□ -0.6
CLSTN3-207ENST00000537408 SMCO2A6NFE2 343 aa11.33□□□□□ -0.6
CLSTN3-207ENST00000537408 POC1B-GALNT4F8VUJ3 575 aa11.33□□□□□ -0.6
CLSTN3-207ENST00000537408 NOL4O94818 638 aa11.33□□□□□ -0.6
CLSTN3-207ENST00000537408 TFPTP0C1Z6 253 aa11.33□□□□□ -0.6
CLSTN3-207ENST00000537408 SCG2P13521 617 aa11.33□□□□□ -0.6
CLSTN3-207ENST00000537408 PTPN2P17706 415 aa11.33□□□□□ -0.6
CLSTN3-207ENST00000537408 NONOQ15233 471 aaKnown RBP eCLIP11.33□□□□□ -0.6
CLSTN3-207ENST00000537408 OASLQ15646 514 aaKnown RBP11.33□□□□□ -0.6
CLSTN3-207ENST00000537408 ANKDD1AQ495B1 522 aa11.33□□□□□ -0.6
CLSTN3-207ENST00000537408 PPP2R2DQ66LE6 453 aa11.33□□□□□ -0.6
CLSTN3-207ENST00000537408 SYDE1Q6ZW31 735 aaPredicted RBP11.33□□□□□ -0.6
CLSTN3-207ENST00000537408 MOB2Q70IA6 237 aa11.33□□□□□ -0.6
CLSTN3-207ENST00000537408 TMC7Q7Z402 723 aa11.33□□□□□ -0.6
CLSTN3-207ENST00000537408 METTL25Q8N6Q8 603 aa11.33□□□□□ -0.6
CLSTN3-207ENST00000537408 SLC35G2Q8TBE7 412 aa11.33□□□□□ -0.6
CLSTN3-207ENST00000537408 GPKOWQ92917 476 aaPredicted RBP eCLIP11.33□□□□□ -0.64e-9■■■■■ 56.5
CLSTN3-207ENST00000537408 SGF29Q96ES7 293 aa11.33□□□□□ -0.6
CLSTN3-207ENST00000537408 PLEKHA8Q96JA3 519 aa11.33□□□□□ -0.6
CLSTN3-207ENST00000537408 LRGUKQ96M69 825 aa11.33□□□□□ -0.6
CLSTN3-207ENST00000537408 SENP6Q9GZR1 1112 aaPredicted RBP11.33□□□□□ -0.6
CLSTN3-207ENST00000537408 STK17AQ9UEE5 414 aa11.33□□□□□ -0.6
CLSTN3-207ENST00000537408 ATP11BQ9Y2G3 1177 aa11.33□□□□□ -0.6
CLSTN3-207ENST00000537408 WDR91A4D1P6 747 aa11.32□□□□□ -0.6
CLSTN3-207ENST00000537408 K7EPI3 171 aa11.32□□□□□ -0.6
CLSTN3-207ENST00000537408 TEX28O15482 410 aa11.32□□□□□ -0.6
CLSTN3-207ENST00000537408 SPOPO43791 374 aa11.32□□□□□ -0.6
CLSTN3-207ENST00000537408 DGKIO75912 1065 aa11.32□□□□□ -0.6
CLSTN3-207ENST00000537408 GALCP54803 685 aa11.32□□□□□ -0.6
CLSTN3-207ENST00000537408 KDSRQ06136 332 aa11.32□□□□□ -0.6
CLSTN3-207ENST00000537408 EDRF1Q3B7T1 1238 aa11.32□□□□□ -0.6
CLSTN3-207ENST00000537408 APOBEC3HQ6NTF7 200 aaKnown RBP11.32□□□□□ -0.6
CLSTN3-207ENST00000537408 FRA10AC1Q70Z53 315 aa11.32□□□□□ -0.6
CLSTN3-207ENST00000537408 TRABD2AQ86V40 505 aa11.32□□□□□ -0.6
CLSTN3-207ENST00000537408 REXO1Q8N1G1 1221 aaKnown RBP11.32□□□□□ -0.6
CLSTN3-207ENST00000537408 RFWD2Q8NHY2 731 aa11.32□□□□□ -0.6
CLSTN3-207ENST00000537408 NEURL2Q9BR09 285 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms