RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), human

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-223	ENST00000526553		A1L4Q6	167 aa		5.73	□□□□□ -1.49
CD44-223	ENST00000526553	FOXN3	O00409	490 aa	Predicted RBP	5.73	□□□□□ -1.49
CD44-223	ENST00000526553	C1R	P00736	705 aa		5.73	□□□□□ -1.49
CD44-223	ENST00000526553	PRKAG1	P54619	331 aa		5.73	□□□□□ -1.49
CD44-223	ENST00000526553	HLTF	Q14527	1009 aa	Known RBP eCLIP	5.73	□□□□□ -1.49
CD44-223	ENST00000526553	AARS2	Q5JTZ9	985 aa	Known RBP	5.73	□□□□□ -1.49
CD44-223	ENST00000526553	CERCAM	Q5T4B2	595 aa		5.73	□□□□□ -1.49
CD44-223	ENST00000526553	DEPDC1	Q5TB30	811 aa		5.73	□□□□□ -1.49
CD44-223	ENST00000526553	ZDHHC24	Q6UX98	284 aa		5.73	□□□□□ -1.49
CD44-223	ENST00000526553	ZNF804A	Q7Z570	1209 aa		5.73	□□□□□ -1.49
CD44-223	ENST00000526553	RASAL3	Q86YV0	1011 aa		5.73	□□□□□ -1.49
CD44-223	ENST00000526553	ABRA	Q8N0Z2	381 aa		5.73	□□□□□ -1.49
CD44-223	ENST00000526553	RP9	Q8TA86	221 aa	Known RBP	5.73	□□□□□ -1.49
CD44-223	ENST00000526553	TBC1D5	Q92609	795 aa		5.73	□□□□□ -1.49
CD44-223	ENST00000526553	DHX36	Q9H2U1	1008 aa	Known RBP	5.73	□□□□□ -1.49
CD44-223	ENST00000526553	PTGFRN	Q9P2B2	879 aa		5.73	□□□□□ -1.49
CD44-223	ENST00000526553	DNMT3B	Q9UBC3	853 aa	Known RBP	5.73	□□□□□ -1.49
CD44-223	ENST00000526553	PCDHGB6	Q9Y5F9	930 aa		5.73	□□□□□ -1.49
CD44-223	ENST00000526553	CDY1	Q9Y6F8	540 aa		5.73	□□□□□ -1.49
CD44-223	ENST00000526553		H0YIZ8	118 aa		5.72	□□□□□ -1.49
CD44-223	ENST00000526553	TJP3	O95049	919 aa		5.72	□□□□□ -1.49
CD44-223	ENST00000526553	ERBB2	P04626	1255 aa		5.72	□□□□□ -1.49
CD44-223	ENST00000526553	FES	P07332	822 aa		5.72	□□□□□ -1.49
CD44-223	ENST00000526553	TXN	P10599	105 aa	Known RBP	5.72	□□□□□ -1.49
CD44-223	ENST00000526553	IL1R1	P14778	569 aa		5.72	□□□□□ -1.49
CD44-223	ENST00000526553	ADORA2A	P29274	412 aa		5.72	□□□□□ -1.49
CD44-223	ENST00000526553	SYCE2	Q6PIF2	218 aa		5.72	□□□□□ -1.49
CD44-223	ENST00000526553	ZNF575	Q86XF7	245 aa		5.72	□□□□□ -1.49
CD44-223	ENST00000526553	IZUMO1	Q8IYV9	350 aa		5.72	□□□□□ -1.49
CD44-223	ENST00000526553	SPART	Q8N0X7	666 aa		5.72	□□□□□ -1.49
CD44-223	ENST00000526553	PPP2R3C	Q969Q6	453 aa		5.72	□□□□□ -1.49
CD44-223	ENST00000526553	STRBP	Q96SI9	672 aa	Known RBP	5.72	□□□□□ -1.49
CD44-223	ENST00000526553	GEMIN8	Q9NWZ8	242 aa	Known RBP	5.72	□□□□□ -1.49
CD44-223	ENST00000526553	DLL3	Q9NYJ7	618 aa		5.72	□□□□□ -1.49
CD44-223	ENST00000526553	ADAM21	Q9UKJ8	722 aa		5.72	□□□□□ -1.49
CD44-223	ENST00000526553	GABRQ	Q9UN88	632 aa		5.72	□□□□□ -1.49
CD44-223	ENST00000526553	SNX14	Q9Y5W7	946 aa		5.72	□□□□□ -1.49
CD44-223	ENST00000526553	WNT6	Q9Y6F9	365 aa		5.72	□□□□□ -1.49
CD44-223	ENST00000526553	ARHGEF17	Q96PE2	2063 aa	Predicted RBP	5.71	□□□□□ -1.49
CD44-223	ENST00000526553	LRRC3C	A6NJW4	275 aa		5.71	□□□□□ -1.5
CD44-223	ENST00000526553	RASSF9	O75901	435 aa		5.71	□□□□□ -1.5
CD44-223	ENST00000526553	CD38	P28907	300 aa		5.71	□□□□□ -1.5
CD44-223	ENST00000526553	BCAT1	P54687	386 aa		5.71	□□□□□ -1.5
CD44-223	ENST00000526553	TPTE	P56180	551 aa		5.71	□□□□□ -1.5
CD44-223	ENST00000526553	DPY19L2P1	Q6NXN4	242 aa		5.71	□□□□□ -1.5
CD44-223	ENST00000526553	YAF2	Q8IY57	180 aa		5.71	□□□□□ -1.5
CD44-223	ENST00000526553	LRRC71	Q8N4P6	559 aa		5.71	□□□□□ -1.5
CD44-223	ENST00000526553	IPCEF1	Q8WWN9	437 aa	Predicted RBP	5.71	□□□□□ -1.5
CD44-223	ENST00000526553	PHKB	Q93100	1093 aa		5.71	□□□□□ -1.5
CD44-223	ENST00000526553	R3HDM4	Q96D70	268 aa		5.71	□□□□□ -1.5
CD44-223	ENST00000526553	RSPRY1	Q96DX4	576 aa		5.71	□□□□□ -1.5
CD44-223	ENST00000526553	STK31	Q9BXU1	1019 aa		5.71	□□□□□ -1.5
CD44-223	ENST00000526553	TRIM5	Q9C035	493 aa		5.71	□□□□□ -1.5
CD44-223	ENST00000526553	UNK	Q9C0B0	810 aa	Known RBP	5.71	□□□□□ -1.5
CD44-223	ENST00000526553	CHST8	Q9H2A9	424 aa		5.71	□□□□□ -1.5
CD44-223	ENST00000526553	DUSP22	Q9NRW4	184 aa		5.71	□□□□□ -1.5
CD44-223	ENST00000526553	QSOX1	O00391	747 aa		5.7	□□□□□ -1.5
CD44-223	ENST00000526553	RRP9	O43818	475 aa	Known RBP	5.7	□□□□□ -1.5
CD44-223	ENST00000526553	INMT	O95050	263 aa		5.7	□□□□□ -1.5
CD44-223	ENST00000526553	FAM163B	P0C2L3	166 aa		5.7	□□□□□ -1.5
CD44-223	ENST00000526553	ACVR2A	P27037	513 aa		5.7	□□□□□ -1.5
CD44-223	ENST00000526553	CYP2C18	P33260	490 aa		5.7	□□□□□ -1.5
CD44-223	ENST00000526553	EEFSEC	P57772	596 aa	Known RBP	5.7	□□□□□ -1.5
CD44-223	ENST00000526553	CCNI	Q14094	377 aa		5.7	□□□□□ -1.5
CD44-223	ENST00000526553	ARHGEF7	Q14155	803 aa		5.7	□□□□□ -1.5
CD44-223	ENST00000526553	NPY5R	Q15761	445 aa		5.7	□□□□□ -1.5
CD44-223	ENST00000526553	CACHD1	Q5VU97	1274 aa		5.7	□□□□□ -1.5
CD44-223	ENST00000526553	CEP85	Q6P2H3	762 aa		5.7	□□□□□ -1.5
CD44-223	ENST00000526553	MTHFD1L	Q6UB35	978 aa		5.7	□□□□□ -1.5
CD44-223	ENST00000526553	PARS2	Q7L3T8	475 aa	Known RBP	5.7	□□□□□ -1.5
CD44-223	ENST00000526553	AMIGO2	Q86SJ2	522 aa		5.7	□□□□□ -1.5
CD44-223	ENST00000526553	ZNF384	Q8TF68	577 aa		5.7	□□□□□ -1.5
CD44-223	ENST00000526553	NTN5	Q8WTR8	489 aa	Predicted RBP	5.7	□□□□□ -1.5
CD44-223	ENST00000526553	TMEM171	Q8WVE6	324 aa		5.7	□□□□□ -1.5
CD44-223	ENST00000526553	SARG	Q9BW04	601 aa		5.7	□□□□□ -1.5
CD44-223	ENST00000526553	FSD1L	Q9BXM9	530 aa		5.7	□□□□□ -1.5
CD44-223	ENST00000526553	GBA2	Q9HCG7	927 aa	Predicted RBP	5.7	□□□□□ -1.5
CD44-223	ENST00000526553	MID2	Q9UJV3	735 aa		5.7	□□□□□ -1.5
CD44-223	ENST00000526553	HDAC9	Q9UKV0	1011 aa		5.7	□□□□□ -1.5
CD44-223	ENST00000526553	PADI4	Q9UM07	663 aa		5.7	□□□□□ -1.5
CD44-223	ENST00000526553	TBC1D30	Q9Y2I9	924 aa		5.7	□□□□□ -1.5
CD44-223	ENST00000526553		H7C4K7	107 aa		5.69	□□□□□ -1.5
CD44-223	ENST00000526553	ZNF213	O14771	459 aa		5.69	□□□□□ -1.5
CD44-223	ENST00000526553	CD3EAP	O15446	510 aa	Known RBP	5.69	□□□□□ -1.5
CD44-223	ENST00000526553	PQBP1	O60828	265 aa	Known RBP	5.69	□□□□□ -1.5
CD44-223	ENST00000526553	SRGAP2	O75044	1071 aa		5.69	□□□□□ -1.5
CD44-223	ENST00000526553	PRKCB	P05771	671 aa		5.69	□□□□□ -1.5
CD44-223	ENST00000526553	HNRNPC	P07910	306 aa	Known RBP eCLIP	5.69	□□□□□ -1.5
CD44-223	ENST00000526553	DLD	P09622	509 aa	Known RBP	5.69	□□□□□ -1.5
CD44-223	ENST00000526553	NPS	P0C0P6	89 aa		5.69	□□□□□ -1.5
CD44-223	ENST00000526553	TRIM27	P14373	513 aa		5.69	□□□□□ -1.5
CD44-223	ENST00000526553	PTDSS1	P48651	473 aa	Known RBP	5.69	□□□□□ -1.5
CD44-223	ENST00000526553	CARS	P49589	748 aa	Known RBP	5.69	□□□□□ -1.5
CD44-223	ENST00000526553	CPT1A	P50416	773 aa		5.69	□□□□□ -1.5
CD44-223	ENST00000526553	PDE1A	P54750	535 aa		5.69	□□□□□ -1.5
CD44-223	ENST00000526553	PROK1	P58294	105 aa		5.69	□□□□□ -1.5
CD44-223	ENST00000526553	SLC29A2	Q14542	456 aa		5.69	□□□□□ -1.5
CD44-223	ENST00000526553	PTCHD3	Q3KNS1	767 aa		5.69	□□□□□ -1.5
CD44-223	ENST00000526553	HSP90AB2P	Q58FF8	381 aa		5.69	□□□□□ -1.5
CD44-223	ENST00000526553	SLC9A4	Q6AI14	798 aa		5.69	□□□□□ -1.5

Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms