RNA–Protein interactions for RNA: ENST00000520602.5

MCF2-209, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,945 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-209ENST00000520602 DNALI1O14645 258 aaPredicted RBP10.62□□□□□ -0.71
MCF2-209ENST00000520602 LIASO43766 372 aa10.62□□□□□ -0.71
MCF2-209ENST00000520602 BANF1O75531 89 aa10.62□□□□□ -0.71
MCF2-209ENST00000520602 PIGRP01833 764 aa10.62□□□□□ -0.71
MCF2-209ENST00000520602 TAF6P49848 677 aa10.62□□□□□ -0.71
MCF2-209ENST00000520602 SULT1E1P49888 294 aa10.62□□□□□ -0.71
MCF2-209ENST00000520602 ARPP19P56211 112 aa10.62□□□□□ -0.71
MCF2-209ENST00000520602 SESN2P58004 480 aaPredicted RBP10.62□□□□□ -0.71
MCF2-209ENST00000520602 COPS2P61201 443 aa10.62□□□□□ -0.71
MCF2-209ENST00000520602 CDC42EP1Q00587 391 aa10.62□□□□□ -0.71
MCF2-209ENST00000520602 ZRSR2Q15696 482 aaKnown RBP10.62□□□□□ -0.71
MCF2-209ENST00000520602 KLHL38Q2WGJ6 581 aa10.62□□□□□ -0.71
MCF2-209ENST00000520602 FBXO47Q5MNV8 452 aa10.62□□□□□ -0.71
MCF2-209ENST00000520602 RWDD4Q6NW29 188 aaKnown RBP10.62□□□□□ -0.71
MCF2-209ENST00000520602 ZNF449Q6P9G9 518 aa10.62□□□□□ -0.71
MCF2-209ENST00000520602 ZDHHC24Q6UX98 284 aa10.62□□□□□ -0.71
MCF2-209ENST00000520602 METTL23Q86XA0 190 aa10.62□□□□□ -0.71
MCF2-209ENST00000520602 GIMAP7Q8NHV1 300 aa10.62□□□□□ -0.71
MCF2-209ENST00000520602 TBC1D31Q96DN5 1066 aa10.62□□□□□ -0.71
MCF2-209ENST00000520602 PGM2Q96G03 612 aa10.62□□□□□ -0.71
MCF2-209ENST00000520602 ELOVL4Q9GZR5 314 aa10.62□□□□□ -0.71
MCF2-209ENST00000520602 SIK2Q9H0K1 926 aa10.62□□□□□ -0.71
MCF2-209ENST00000520602 FZD8Q9H461 694 aa10.62□□□□□ -0.71
MCF2-209ENST00000520602 FAM47DPA6NHR8 397 aa10.62□□□□□ -0.71
MCF2-209ENST00000520602 VGLL3A8MV65 326 aa10.62□□□□□ -0.71
MCF2-209ENST00000520602 RPS6KA5O75582 802 aa10.62□□□□□ -0.71
MCF2-209ENST00000520602 KDELR1P24390 212 aa10.62□□□□□ -0.71
MCF2-209ENST00000520602 RNASELQ05823 741 aaKnown RBP10.62□□□□□ -0.71
MCF2-209ENST00000520602 NR1H3Q13133 447 aa10.62□□□□□ -0.71
MCF2-209ENST00000520602 TXNRD3NBQ6F5E7 133 aa10.62□□□□□ -0.71
MCF2-209ENST00000520602 NPNTQ6UXI9 565 aa10.62□□□□□ -0.71
MCF2-209ENST00000520602 FBXO36Q8NEA4 188 aa10.62□□□□□ -0.71
MCF2-209ENST00000520602 AGAP3Q96P47 875 aa10.62□□□□□ -0.71
MCF2-209ENST00000520602 FAM129AQ9BZQ8 928 aa10.62□□□□□ -0.71
MCF2-209ENST00000520602 KLHL8Q9P2G9 620 aaPredicted RBP10.62□□□□□ -0.71
MCF2-209ENST00000520602 HMGXB4Q9UGU5 601 aa10.62□□□□□ -0.71
MCF2-209ENST00000520602 DDX20Q9UHI6 824 aaKnown RBP10.62□□□□□ -0.71
MCF2-209ENST00000520602 STAP1Q9ULZ2 295 aa10.62□□□□□ -0.71
MCF2-209ENST00000520602 C22orf31O95567 290 aa10.61□□□□□ -0.71
MCF2-209ENST00000520602 HMGCRP04035 888 aa10.61□□□□□ -0.71
MCF2-209ENST00000520602 ERBB2P04626 1255 aa10.61□□□□□ -0.71
MCF2-209ENST00000520602 CCDC130P13994 396 aa10.61□□□□□ -0.71
MCF2-209ENST00000520602 DNAJC3Q13217 504 aa10.61□□□□□ -0.71
MCF2-209ENST00000520602 CCDC6Q16204 474 aa10.61□□□□□ -0.71
MCF2-209ENST00000520602 CNGA2Q16280 664 aa10.61□□□□□ -0.71
MCF2-209ENST00000520602 SLC10A6Q3KNW5 377 aa10.61□□□□□ -0.71
MCF2-209ENST00000520602 C18orf25Q96B23 403 aaPredicted RBP10.61□□□□□ -0.71
MCF2-209ENST00000520602 PDZD7Q9H5P4 517 aa10.61□□□□□ -0.71
MCF2-209ENST00000520602 ZDHHC18Q9NUE0 388 aa10.61□□□□□ -0.71
MCF2-209ENST00000520602 SDAD1Q9NVU7 687 aaKnown RBP eCLIP10.61□□□□□ -0.71
MCF2-209ENST00000520602 KIAA1257Q9ULG3 409 aa10.61□□□□□ -0.71
MCF2-209ENST00000520602 A0A0G2JND7 137 aa10.61□□□□□ -0.71
MCF2-209ENST00000520602 TRAPPC3O43617 180 aa10.61□□□□□ -0.71
MCF2-209ENST00000520602 EDN1P05305 212 aa10.61□□□□□ -0.71
MCF2-209ENST00000520602 RAD23BP54727 409 aa10.61□□□□□ -0.71
MCF2-209ENST00000520602 E2F5Q15329 346 aa10.61□□□□□ -0.71
MCF2-209ENST00000520602 SCN4BQ8IWT1 228 aa10.61□□□□□ -0.71
MCF2-209ENST00000520602 PPTC7Q8NI37 304 aa10.61□□□□□ -0.71
MCF2-209ENST00000520602 CYTH2Q99418 400 aa10.61□□□□□ -0.71
MCF2-209ENST00000520602 FOXP3Q9BZS1 431 aa10.61□□□□□ -0.71
MCF2-209ENST00000520602 ACTR5Q9H9F9 607 aaPredicted RBP10.61□□□□□ -0.71
MCF2-209ENST00000520602 STYXL1Q9Y6J8 313 aa10.61□□□□□ -0.71
MCF2-209ENST00000520602 hCG_1818297A0A087WSY0 165 aa10.61□□□□□ -0.71
MCF2-209ENST00000520602 C17orf102A2RUQ5 167 aa10.61□□□□□ -0.71
MCF2-209ENST00000520602 GRIN3BO60391 1043 aa10.61□□□□□ -0.71
MCF2-209ENST00000520602 KRT37O76014 449 aa10.61□□□□□ -0.71
MCF2-209ENST00000520602 NUDT17P0C025 328 aa10.61□□□□□ -0.71
MCF2-209ENST00000520602 CPT1AP50416 773 aa10.61□□□□□ -0.71
MCF2-209ENST00000520602 MORF4L2Q15014 288 aa10.61□□□□□ -0.71
MCF2-209ENST00000520602 IQSEC1Q6DN90 963 aa10.61□□□□□ -0.71
MCF2-209ENST00000520602 PID1Q7Z2X4 250 aa10.61□□□□□ -0.71
MCF2-209ENST00000520602 DEPDC1BQ8WUY9 529 aa10.61□□□□□ -0.71
MCF2-209ENST00000520602 CDKL2Q92772 493 aa10.61□□□□□ -0.71
MCF2-209ENST00000520602 ATP2A3Q93084 1043 aa10.61□□□□□ -0.71
MCF2-209ENST00000520602 FAM193BQ96PV7 902 aaPredicted RBP10.61□□□□□ -0.71
MCF2-209ENST00000520602 PLCD4Q9BRC7 762 aa10.61□□□□□ -0.71
MCF2-209ENST00000520602 TACO1Q9BSH4 297 aaKnown RBP10.61□□□□□ -0.71
MCF2-209ENST00000520602 NXF3Q9H4D5 531 aaKnown RBP10.61□□□□□ -0.71
MCF2-209ENST00000520602 ZC3H7BQ9UGR2 993 aaKnown RBP10.61□□□□□ -0.71
MCF2-209ENST00000520602 ATP8B3O60423 1300 aa10.61□□□□□ -0.71
MCF2-209ENST00000520602 GLTPD2A6NH11 291 aa10.6□□□□□ -0.71
MCF2-209ENST00000520602 COPEO14579 308 aa10.6□□□□□ -0.71
MCF2-209ENST00000520602 KRT4P19013 534 aa10.6□□□□□ -0.71
MCF2-209ENST00000520602 CA8P35219 290 aa10.6□□□□□ -0.71
MCF2-209ENST00000520602 ARHGAP1Q07960 439 aa10.6□□□□□ -0.71
MCF2-209ENST00000520602 MFSD10Q14728 455 aa10.6□□□□□ -0.71
MCF2-209ENST00000520602 FAM183BPQ6ZVS7 135 aa10.6□□□□□ -0.71
MCF2-209ENST00000520602 SPATA21Q7Z572 469 aa10.6□□□□□ -0.71
MCF2-209ENST00000520602 TWNKQ96RR1 684 aa10.6□□□□□ -0.71
MCF2-209ENST00000520602 CDK5RAP2Q96SN8 1893 aa10.6□□□□□ -0.71
MCF2-209ENST00000520602 NCAPGQ9BPX3 1015 aa10.6□□□□□ -0.71
MCF2-209ENST00000520602 B3GNT5Q9BYG0 378 aa10.6□□□□□ -0.71
MCF2-209ENST00000520602 PCDH9Q9HC56 1237 aa10.6□□□□□ -0.71
MCF2-209ENST00000520602 PSMC3IPQ9P2W1 217 aaPredicted RBP10.6□□□□□ -0.71
MCF2-209ENST00000520602 COL11A2P13942 1736 aaPredicted RBP10.6□□□□□ -0.71
MCF2-209ENST00000520602 LPXNO60711 386 aa10.6□□□□□ -0.71
MCF2-209ENST00000520602 LRCH4O75427 683 aa10.6□□□□□ -0.71
MCF2-209ENST00000520602 SMIM10L2AP0DMW4 78 aa10.6□□□□□ -0.71
MCF2-209ENST00000520602 SMIM10L2BP0DMW5 78 aa10.6□□□□□ -0.71
MCF2-209ENST00000520602 SMPD1P17405 629 aa10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms