RNA–Protein interactions for RNA: ENST00000519895.5

MCF2-208, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene MCF2, Length 3,346 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-208ENST00000519895 MYRFLQ96LU7 910 aa3.04□□□□□ -1.92
MCF2-208ENST00000519895 RPS6KC1Q96S38 1066 aa3.04□□□□□ -1.92
MCF2-208ENST00000519895 TTLL2Q9BWV7 592 aa3.04□□□□□ -1.92
MCF2-208ENST00000519895 ZCWPW1Q9H0M4 648 aa3.04□□□□□ -1.92
MCF2-208ENST00000519895 MINDY3Q9H8M7 445 aa3.04□□□□□ -1.92
MCF2-208ENST00000519895 TBC1D17Q9HA65 648 aa3.04□□□□□ -1.92
MCF2-208ENST00000519895 TMEM8AQ9HCN3 771 aa3.04□□□□□ -1.92
MCF2-208ENST00000519895 PLCB1Q9NQ66 1216 aa3.04□□□□□ -1.92
MCF2-208ENST00000519895 LMBRD1Q9NUN5 540 aa3.04□□□□□ -1.92
MCF2-208ENST00000519895 INTS13Q9NVM9 706 aa3.04□□□□□ -1.92
MCF2-208ENST00000519895 MARCH5Q9NX47 278 aa3.04□□□□□ -1.92
MCF2-208ENST00000519895 KIAA1468Q9P260 1216 aa3.04□□□□□ -1.92
MCF2-208ENST00000519895 AFF4Q9UHB7 1163 aaKnown RBP3.04□□□□□ -1.92
MCF2-208ENST00000519895 ADAM28Q9UKQ2 775 aa3.04□□□□□ -1.92
MCF2-208ENST00000519895 CDH9Q9ULB4 789 aa3.04□□□□□ -1.92
MCF2-208ENST00000519895 PIN4Q9Y237 131 aaKnown RBP3.04□□□□□ -1.92
MCF2-208ENST00000519895 FAN1Q9Y2M0 1017 aa3.04□□□□□ -1.92
MCF2-208ENST00000519895 HELZP42694 1942 aaKnown RBP3.04□□□□□ -1.92
MCF2-208ENST00000519895 DENND4CQ5VZ89 1909 aa3.04□□□□□ -1.92
MCF2-208ENST00000519895 FN1P02751 2386 aaKnown RBP3.04□□□□□ -1.92
MCF2-208ENST00000519895 SMIM28A0A1B0GU29 152 aa3.04□□□□□ -1.92
MCF2-208ENST00000519895 WIPF3A6NGB9 483 aa3.04□□□□□ -1.92
MCF2-208ENST00000519895 LRRIQ4A6NIV6 560 aa3.04□□□□□ -1.92
MCF2-208ENST00000519895 PTGESO14684 152 aa3.04□□□□□ -1.92
MCF2-208ENST00000519895 ZNF189O75820 626 aaPredicted RBP3.04□□□□□ -1.92
MCF2-208ENST00000519895 C4BPAP04003 597 aaKnown RBP3.04□□□□□ -1.92
MCF2-208ENST00000519895 ADH1AP07327 375 aa3.04□□□□□ -1.92
MCF2-208ENST00000519895 PAEPP09466 180 aa3.04□□□□□ -1.92
MCF2-208ENST00000519895 FBXO45P0C2W1 286 aa3.04□□□□□ -1.92
MCF2-208ENST00000519895 RARAP10276 462 aa3.04□□□□□ -1.92
MCF2-208ENST00000519895 ODC1P11926 461 aa3.04□□□□□ -1.92
MCF2-208ENST00000519895 MARK3P27448 753 aa3.04□□□□□ -1.92
MCF2-208ENST00000519895 MARCKSP29966 332 aaPredicted RBP3.04□□□□□ -1.92
MCF2-208ENST00000519895 HOXA6P31267 233 aa3.04□□□□□ -1.92
MCF2-208ENST00000519895 HOXD13P35453 343 aa3.04□□□□□ -1.92
MCF2-208ENST00000519895 GLUD2P49448 558 aa3.04□□□□□ -1.92
MCF2-208ENST00000519895 PEX3P56589 373 aa3.04□□□□□ -1.92
MCF2-208ENST00000519895 BCAR1P56945 870 aa3.04□□□□□ -1.92
MCF2-208ENST00000519895 ZNF445P59923 1031 aa3.04□□□□□ -1.92
MCF2-208ENST00000519895 GUCY1B3Q02153 619 aa3.04□□□□□ -1.92
MCF2-208ENST00000519895 GCNT1Q02742 428 aa3.04□□□□□ -1.92
MCF2-208ENST00000519895 NNTQ13423 1086 aa3.04□□□□□ -1.92
MCF2-208ENST00000519895 BTG3Q14201 252 aaPredicted RBP3.04□□□□□ -1.92
MCF2-208ENST00000519895 NFE2Q16621 373 aaPredicted RBP3.04□□□□□ -1.92
MCF2-208ENST00000519895 OCLNQ16625 522 aa3.04□□□□□ -1.92
MCF2-208ENST00000519895 DUOXA2Q1HG44 320 aa3.04□□□□□ -1.92
MCF2-208ENST00000519895 KIZQ2M2Z5 673 aa3.04□□□□□ -1.92
MCF2-208ENST00000519895 SGSM1Q2NKQ1 1148 aa3.04□□□□□ -1.92
MCF2-208ENST00000519895 ZNF568Q3ZCX4 644 aa3.04□□□□□ -1.92
MCF2-208ENST00000519895 ZACNQ401N2 412 aa3.04□□□□□ -1.92
MCF2-208ENST00000519895 CCDC183Q5T5S1 534 aa3.04□□□□□ -1.92
MCF2-208ENST00000519895 ANKRD54Q6NXT1 300 aa3.04□□□□□ -1.92
MCF2-208ENST00000519895 LRRC55Q6ZSA7 311 aa3.04□□□□□ -1.92
MCF2-208ENST00000519895 ARHGAP30Q7Z6I6 1101 aaPredicted RBP3.04□□□□□ -1.92
MCF2-208ENST00000519895 GLYCTKQ8IVS8 523 aa3.04□□□□□ -1.92
MCF2-208ENST00000519895 DCP1BQ8IZD4 617 aaKnown RBP3.04□□□□□ -1.92
MCF2-208ENST00000519895 ABI1Q8IZP0 508 aa3.04□□□□□ -1.92
MCF2-208ENST00000519895 AZIN2Q96A70 460 aa3.04□□□□□ -1.92
MCF2-208ENST00000519895 CLDN23Q96B33 292 aa3.04□□□□□ -1.92
MCF2-208ENST00000519895 YME1L1Q96TA2 773 aa3.04□□□□□ -1.92
MCF2-208ENST00000519895 RBCK1Q9BYM8 510 aa3.04□□□□□ -1.92
MCF2-208ENST00000519895 WDR6Q9NNW5 1121 aaKnown RBP3.04□□□□□ -1.92
MCF2-208ENST00000519895 GEMIN8Q9NWZ8 242 aaKnown RBP3.04□□□□□ -1.92
MCF2-208ENST00000519895 UXTQ9UBK9 157 aaPredicted RBP3.04□□□□□ -1.92
MCF2-208ENST00000519895 TLN1Q9Y490 2541 aaKnown RBP3.04□□□□□ -1.92
MCF2-208ENST00000519895 GOLGA6L4A6NEF3 574 aa3.04□□□□□ -1.92
MCF2-208ENST00000519895 C2orf71A6NGG8 1288 aa3.04□□□□□ -1.92
MCF2-208ENST00000519895 INO80B-WBP1J3KQ70 363 aa3.04□□□□□ -1.92
MCF2-208ENST00000519895 ZNF197O14709 1029 aa3.04□□□□□ -1.92
MCF2-208ENST00000519895 CETN3O15182 167 aa3.04□□□□□ -1.92
MCF2-208ENST00000519895 POLR2DO15514 142 aaKnown RBP3.04□□□□□ -1.92
MCF2-208ENST00000519895 CLASP2O75122 1294 aaKnown RBP3.04□□□□□ -1.92
MCF2-208ENST00000519895 FGF18O76093 207 aa3.04□□□□□ -1.92
MCF2-208ENST00000519895 TNNC2P02585 160 aa3.04□□□□□ -1.92
MCF2-208ENST00000519895 ITGB1P05556 798 aa3.04□□□□□ -1.92
MCF2-208ENST00000519895 PCSK1P29120 753 aa3.04□□□□□ -1.92
MCF2-208ENST00000519895 ALDH7A1P49419 539 aaKnown RBP3.04□□□□□ -1.92
MCF2-208ENST00000519895 TAF6P49848 677 aa3.04□□□□□ -1.92
MCF2-208ENST00000519895 CCL23P55773 120 aa3.04□□□□□ -1.92
MCF2-208ENST00000519895 PRSS12P56730 875 aa3.04□□□□□ -1.92
MCF2-208ENST00000519895 DEFB103AP81534 67 aa3.04□□□□□ -1.92
MCF2-208ENST00000519895 CSTF1Q05048 431 aaKnown RBP3.04□□□□□ -1.92
MCF2-208ENST00000519895 MYO1EQ12965 1108 aa3.04□□□□□ -1.92
MCF2-208ENST00000519895 GPR17Q13304 367 aa3.04□□□□□ -1.92
MCF2-208ENST00000519895 TMEM132DQ14C87 1099 aa3.04□□□□□ -1.92
MCF2-208ENST00000519895 PTPN14Q15678 1187 aa3.04□□□□□ -1.92
MCF2-208ENST00000519895 CFAP221Q4G0U5 840 aa3.04□□□□□ -1.92
MCF2-208ENST00000519895 HSF5Q4G112 596 aaPredicted RBP3.04□□□□□ -1.92
MCF2-208ENST00000519895 C9orf57Q5W0N0 161 aa3.04□□□□□ -1.92
MCF2-208ENST00000519895 TWF2Q6IBS0 349 aaKnown RBP3.04□□□□□ -1.92
MCF2-208ENST00000519895 ZNF280DQ6N043 979 aa3.04□□□□□ -1.92
MCF2-208ENST00000519895 TTI2Q6NXR4 508 aa3.04□□□□□ -1.92
MCF2-208ENST00000519895 LIN28BQ6ZN17 250 aaKnown RBP eCLIP3.04□□□□□ -1.92
MCF2-208ENST00000519895 ZNF677Q86XU0 584 aa3.04□□□□□ -1.92
MCF2-208ENST00000519895 SIX5Q8N196 739 aa3.04□□□□□ -1.92
MCF2-208ENST00000519895 LRRC71Q8N4P6 559 aa3.04□□□□□ -1.92
MCF2-208ENST00000519895 ZNF557Q8N988 423 aaPredicted RBP3.04□□□□□ -1.92
MCF2-208ENST00000519895 KIAA0895Q8NCT3 520 aa3.04□□□□□ -1.92
MCF2-208ENST00000519895 PDZD8Q8NEN9 1154 aa3.04□□□□□ -1.92
MCF2-208ENST00000519895 PIGOQ8TEQ8 1089 aa3.04□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms