RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 WHAMMQ8TF30 809 aa21.79■■□□□ 1.08
SQSTM1-215ENST00000514093 POMGNT1Q8WZA1 660 aa21.79■■□□□ 1.08
SQSTM1-215ENST00000514093 STYXL1Q9Y6J8 313 aa21.79■■□□□ 1.08
SQSTM1-215ENST00000514093 GON4LQ3T8J9 2241 aa21.79■■□□□ 1.08
SQSTM1-215ENST00000514093 ATP2C2O75185 946 aa21.78■■□□□ 1.08
SQSTM1-215ENST00000514093 TBCAO75347 108 aaKnown RBP21.78■■□□□ 1.08
SQSTM1-215ENST00000514093 TCF3P15923 654 aa21.78■■□□□ 1.08
SQSTM1-215ENST00000514093 ADSSP30520 456 aa21.78■■□□□ 1.08
SQSTM1-215ENST00000514093 ATXN3P54252 364 aaPredicted RBP21.78■■□□□ 1.08
SQSTM1-215ENST00000514093 RILPL1Q5EBL4 403 aa21.78■■□□□ 1.08
SQSTM1-215ENST00000514093 C19orf48Q6RUI8 117 aa21.78■■□□□ 1.08
SQSTM1-215ENST00000514093 C12orf40Q86WS4 652 aa21.78■■□□□ 1.08
SQSTM1-215ENST00000514093 ADGRG2Q8IZP9 1017 aa21.78■■□□□ 1.08
SQSTM1-215ENST00000514093 C1orf127Q8N9H9 656 aa21.78■■□□□ 1.08
SQSTM1-215ENST00000514093 OR2I1PQ8NGU4 316 aa21.78■■□□□ 1.08
SQSTM1-215ENST00000514093 POLMQ9NP87 494 aaPredicted RBP21.78■■□□□ 1.08
SQSTM1-215ENST00000514093 PILRBQ9UKJ0 227 aa21.78■■□□□ 1.08
SQSTM1-215ENST00000514093 SNX9Q9Y5X1 595 aa21.78■■□□□ 1.08
SQSTM1-215ENST00000514093 ADAMTS9Q9P2N4 1935 aa21.77■■□□□ 1.08
SQSTM1-215ENST00000514093 MYMKA6NI61 221 aa21.77■■□□□ 1.08
SQSTM1-215ENST00000514093 IL18RAPO95256 599 aa21.77■■□□□ 1.08
SQSTM1-215ENST00000514093 SEC24BO95487 1268 aa21.77■■□□□ 1.08
SQSTM1-215ENST00000514093 CHRM1P11229 460 aaPredicted RBP21.77■■□□□ 1.08
SQSTM1-215ENST00000514093 PLCG1P19174 1290 aa21.77■■□□□ 1.08
SQSTM1-215ENST00000514093 USP46P62068 366 aa21.77■■□□□ 1.08
SQSTM1-215ENST00000514093 DHCR24Q15392 516 aa21.77■■□□□ 1.08
SQSTM1-215ENST00000514093 CFAP221Q4G0U5 840 aa21.77■■□□□ 1.08
SQSTM1-215ENST00000514093 HDDC3Q8N4P3 179 aa21.77■■□□□ 1.08
SQSTM1-215ENST00000514093 SPATA18Q8TC71 538 aa21.77■■□□□ 1.08
SQSTM1-215ENST00000514093 CALML4Q96GE6 196 aa21.77■■□□□ 1.08
SQSTM1-215ENST00000514093 PNKPQ96T60 521 aa21.77■■□□□ 1.08
SQSTM1-215ENST00000514093 FAM213AQ9BRX8 229 aa21.77■■□□□ 1.08
SQSTM1-215ENST00000514093 RNF38Q9H0F5 515 aa21.77■■□□□ 1.08
SQSTM1-215ENST00000514093 TNRC6BQ9UPQ9 1833 aaKnown RBP21.77■■□□□ 1.08
SQSTM1-215ENST00000514093 LAMA5O15230 3695 aa21.77■■□□□ 1.08
SQSTM1-215ENST00000514093 TCRBV21S2A2A0A5A6 115 aa21.76■■□□□ 1.07
SQSTM1-215ENST00000514093 ADAM23O75077 832 aa21.76■■□□□ 1.07
SQSTM1-215ENST00000514093 KAT7O95251 611 aa21.76■■□□□ 1.07
SQSTM1-215ENST00000514093 KDSRQ06136 332 aa21.76■■□□□ 1.07
SQSTM1-215ENST00000514093 ADGRF2Q8IZF7 708 aa21.76■■□□□ 1.07
SQSTM1-215ENST00000514093 TMEM86AQ8N2M4 240 aa21.76■■□□□ 1.07
SQSTM1-215ENST00000514093 CSGALNACT2Q8N6G5 542 aa21.76■■□□□ 1.07
SQSTM1-215ENST00000514093 SAAL1Q96ER3 474 aa21.76■■□□□ 1.07
SQSTM1-215ENST00000514093 ZSCAN31Q96LW9 406 aaPredicted RBP21.76■■□□□ 1.07
SQSTM1-215ENST00000514093 SMPD4Q9NXE4 827 aa21.76■■□□□ 1.07
SQSTM1-215ENST00000514093 APODP05090 189 aa21.75■■□□□ 1.07
SQSTM1-215ENST00000514093 KRT19P08727 400 aa21.75■■□□□ 1.07
SQSTM1-215ENST00000514093 UBA7P41226 1012 aa21.75■■□□□ 1.07
SQSTM1-215ENST00000514093 PI4KAP42356 2102 aa21.75■■□□□ 1.07
SQSTM1-215ENST00000514093 KIR2DL1P43626 348 aaPredicted RBP21.75■■□□□ 1.07
SQSTM1-215ENST00000514093 PSMC1P62191 440 aaKnown RBP21.75■■□□□ 1.07
SQSTM1-215ENST00000514093 EOGTQ5NDL2 527 aa21.75■■□□□ 1.07
SQSTM1-215ENST00000514093 LMBRD2Q68DH5 695 aaPredicted RBP21.75■■□□□ 1.07
SQSTM1-215ENST00000514093 PROSER1Q86XN7 944 aa21.75■■□□□ 1.07
SQSTM1-215ENST00000514093 NT5DC4Q86YG4 428 aa21.75■■□□□ 1.07
SQSTM1-215ENST00000514093 RAD54LQ92698 747 aa21.75■■□□□ 1.07
SQSTM1-215ENST00000514093 TRPM5Q9NZQ8 1165 aa21.75■■□□□ 1.07
SQSTM1-215ENST00000514093 SLC6A14Q9UN76 642 aa21.75■■□□□ 1.07
SQSTM1-215ENST00000514093 CPQQ9Y646 472 aa21.75■■□□□ 1.07
SQSTM1-215ENST00000514093 ITPR1Q14643 2758 aa21.75■■□□□ 1.07
SQSTM1-215ENST00000514093 HELZP42694 1942 aaKnown RBP21.74■■□□□ 1.07
SQSTM1-215ENST00000514093 FREM2Q5SZK8 3169 aa21.74■■□□□ 1.07
SQSTM1-215ENST00000514093 UPK3BL1B0FP48 263 aa21.74■■□□□ 1.07
SQSTM1-215ENST00000514093 UPK3BL2E5RIL1 263 aa21.74■■□□□ 1.07
SQSTM1-215ENST00000514093 ABL1P00519 1130 aa21.74■■□□□ 1.07
SQSTM1-215ENST00000514093 CAPNS1P04632 268 aa21.74■■□□□ 1.07
SQSTM1-215ENST00000514093 BDNFP23560 247 aa21.74■■□□□ 1.07
SQSTM1-215ENST00000514093 ABCD1P33897 745 aa21.74■■□□□ 1.07
SQSTM1-215ENST00000514093 RDXP35241 583 aaKnown RBP21.74■■□□□ 1.07
SQSTM1-215ENST00000514093 GRIK1P39086 918 aa21.74■■□□□ 1.07
SQSTM1-215ENST00000514093 LHX1P48742 406 aa21.74■■□□□ 1.07
SQSTM1-215ENST00000514093 POU5F1Q01860 360 aaKnown RBP21.74■■□□□ 1.07
SQSTM1-215ENST00000514093 GFPT1Q06210 699 aaPredicted RBP21.74■■□□□ 1.07
SQSTM1-215ENST00000514093 KCNA1Q09470 495 aa21.74■■□□□ 1.07
SQSTM1-215ENST00000514093 RESTQ13127 1097 aa21.74■■□□□ 1.07
SQSTM1-215ENST00000514093 DUOXA1Q1HG43 343 aa21.74■■□□□ 1.07
SQSTM1-215ENST00000514093 SOWAHAQ2M3V2 549 aa21.74■■□□□ 1.07
SQSTM1-215ENST00000514093 ARL6IP4Q66PJ3 421 aaKnown RBP21.74■■□□□ 1.07
SQSTM1-215ENST00000514093 FAM171BQ6P995 826 aa21.74■■□□□ 1.07
SQSTM1-215ENST00000514093 RHBDF2Q6PJF5 856 aa21.74■■□□□ 1.07
SQSTM1-215ENST00000514093 CXorf38Q8TB03 319 aa21.74■■□□□ 1.07
SQSTM1-215ENST00000514093 FUBP3Q96I24 572 aaKnown RBP eCLIP21.74■■□□□ 1.07
SQSTM1-215ENST00000514093 CAMK1GQ96NX5 476 aa21.74■■□□□ 1.07
SQSTM1-215ENST00000514093 ARHGEF4Q9NR80 690 aa21.74■■□□□ 1.07
SQSTM1-215ENST00000514093 GDAP2Q9NXN4 497 aa21.74■■□□□ 1.07
SQSTM1-215ENST00000514093 MAGEC2Q9UBF1 373 aaPredicted RBP21.74■■□□□ 1.07
SQSTM1-215ENST00000514093 FAM221BA6H8Z2 402 aa21.73■■□□□ 1.07
SQSTM1-215ENST00000514093 H0Y626 953 aa21.73■■□□□ 1.07
SQSTM1-215ENST00000514093 GABRDO14764 452 aa21.73■■□□□ 1.07
SQSTM1-215ENST00000514093 OPHN1O60890 802 aa21.73■■□□□ 1.07
SQSTM1-215ENST00000514093 TRIM16O95361 564 aa21.73■■□□□ 1.07
SQSTM1-215ENST00000514093 LMO2P25791 158 aa21.73■■□□□ 1.07
SQSTM1-215ENST00000514093 PCSK1P29120 753 aa21.73■■□□□ 1.07
SQSTM1-215ENST00000514093 MAGEA11P43364 429 aa21.73■■□□□ 1.07
SQSTM1-215ENST00000514093 PDE6CP51160 858 aa21.73■■□□□ 1.07
SQSTM1-215ENST00000514093 RPL6Q02878 288 aaKnown RBP21.73■■□□□ 1.07
SQSTM1-215ENST00000514093 SPDYCQ5MJ68 293 aa21.73■■□□□ 1.07
SQSTM1-215ENST00000514093 PEAR1Q5VY43 1037 aaPredicted RBP21.73■■□□□ 1.07
SQSTM1-215ENST00000514093 ZNF720Q7Z2F6 126 aa21.73■■□□□ 1.07
SQSTM1-215ENST00000514093 MINDY1Q8N5J2 469 aa21.73■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms