RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 TUSC2O75896 110 aa2.67□□□□□ -1.98
HMGB1-208ENST00000490788 C1RP00736 705 aa2.67□□□□□ -1.98
HMGB1-208ENST00000490788 EBLN1P0CF75 366 aa2.67□□□□□ -1.98
HMGB1-208ENST00000490788 NR2F6P10588 404 aa2.67□□□□□ -1.98
HMGB1-208ENST00000490788 BRAFP15056 766 aa2.67□□□□□ -1.98
HMGB1-208ENST00000490788 ZFXP17010 805 aaPredicted RBP2.67□□□□□ -1.98
HMGB1-208ENST00000490788 TYRP1P17643 537 aa2.67□□□□□ -1.98
HMGB1-208ENST00000490788 ATF3P18847 181 aa2.67□□□□□ -1.98
HMGB1-208ENST00000490788 GPD1P21695 349 aa2.67□□□□□ -1.98
HMGB1-208ENST00000490788 CD38P28907 300 aa2.67□□□□□ -1.98
HMGB1-208ENST00000490788 LRPAP1P30533 357 aa2.67□□□□□ -1.98
HMGB1-208ENST00000490788 VIPR2P41587 438 aa2.67□□□□□ -1.98
HMGB1-208ENST00000490788 MAPK10P53779 464 aa2.67□□□□□ -1.98
HMGB1-208ENST00000490788 PRKAG1P54619 331 aa2.67□□□□□ -1.98
HMGB1-208ENST00000490788 PDE1AP54750 535 aa2.67□□□□□ -1.98
HMGB1-208ENST00000490788 UCP3P55916 312 aa2.67□□□□□ -1.98
HMGB1-208ENST00000490788 LILRA4P59901 499 aa2.67□□□□□ -1.98
HMGB1-208ENST00000490788 SLC13A2Q13183 592 aa2.67□□□□□ -1.98
HMGB1-208ENST00000490788 LLGL1Q15334 1064 aa2.67□□□□□ -1.98
HMGB1-208ENST00000490788 LRRC41Q15345 812 aa2.67□□□□□ -1.98
HMGB1-208ENST00000490788 TXNRD1Q16881 649 aa2.67□□□□□ -1.98
HMGB1-208ENST00000490788 KRTAP15-1Q3LI76 137 aa2.67□□□□□ -1.98
HMGB1-208ENST00000490788 ZNF618Q5T7W0 954 aa2.67□□□□□ -1.98
HMGB1-208ENST00000490788 ARHGAP40Q5TG30 622 aa2.67□□□□□ -1.98
HMGB1-208ENST00000490788 DPY19L2P1Q6NXN4 242 aa2.67□□□□□ -1.98
HMGB1-208ENST00000490788 FBXO42Q6P3S6 717 aa2.67□□□□□ -1.98
HMGB1-208ENST00000490788 PCSK4Q6UW60 755 aa2.67□□□□□ -1.98
HMGB1-208ENST00000490788 NPNTQ6UXI9 565 aa2.67□□□□□ -1.98
HMGB1-208ENST00000490788 MAEAQ7L5Y9 396 aa2.67□□□□□ -1.98
HMGB1-208ENST00000490788 KRT27Q7Z3Y8 459 aa2.67□□□□□ -1.98
HMGB1-208ENST00000490788 PPP1R32Q7Z5V6 425 aa2.67□□□□□ -1.98
HMGB1-208ENST00000490788 RAVER1Q8IY67 606 aaKnown RBP2.67□□□□□ -1.98
HMGB1-208ENST00000490788 SLC15A4Q8N697 577 aa2.67□□□□□ -1.98
HMGB1-208ENST00000490788 PLBD2Q8NHP8 589 aa2.67□□□□□ -1.98
HMGB1-208ENST00000490788 SMCR8Q8TEV9 937 aaPredicted RBP2.67□□□□□ -1.98
HMGB1-208ENST00000490788 KBTBD7Q8WVZ9 684 aa2.67□□□□□ -1.98
HMGB1-208ENST00000490788 LRIG1Q96JA1 1093 aa2.67□□□□□ -1.98
HMGB1-208ENST00000490788 PDLIM2Q96JY6 352 aa2.67□□□□□ -1.98
HMGB1-208ENST00000490788 HAPLN3Q96S86 360 aa2.67□□□□□ -1.98
HMGB1-208ENST00000490788 P2RX7Q99572 595 aaKnown RBP2.67□□□□□ -1.98
HMGB1-208ENST00000490788 PTDSS2Q9BVG9 487 aa2.67□□□□□ -1.98
HMGB1-208ENST00000490788 AMBRA1Q9C0C7 1298 aa2.67□□□□□ -1.98
HMGB1-208ENST00000490788 MRPS18AQ9NVS2 196 aaKnown RBP2.67□□□□□ -1.98
HMGB1-208ENST00000490788 GABBR1Q9UBS5 961 aa2.67□□□□□ -1.98
HMGB1-208ENST00000490788 SERTAD3Q9UJW9 196 aa2.67□□□□□ -1.98
HMGB1-208ENST00000490788 TPCN1Q9ULQ1 816 aa2.67□□□□□ -1.98
HMGB1-208ENST00000490788 ST3GAL5Q9UNP4 418 aa2.67□□□□□ -1.98
HMGB1-208ENST00000490788 MED16Q9Y2X0 877 aa2.67□□□□□ -1.98
HMGB1-208ENST00000490788 SHANK3Q9BYB0 1731 aa2.67□□□□□ -1.98
HMGB1-208ENST00000490788 KIAA1210Q9ULL0 1709 aa2.67□□□□□ -1.98
HMGB1-208ENST00000490788 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP2.67□□□□□ -1.98
HMGB1-208ENST00000490788 ATRNO75882 1429 aa2.67□□□□□ -1.98
HMGB1-208ENST00000490788 SALL3Q9BXA9 1300 aa2.67□□□□□ -1.98
HMGB1-208ENST00000490788 MED14O60244 1454 aa2.66□□□□□ -1.98
HMGB1-208ENST00000490788 LINC00473A8K010 186 aa2.66□□□□□ -1.98
HMGB1-208ENST00000490788 ADM5C9JUS6 153 aa2.66□□□□□ -1.98
HMGB1-208ENST00000490788 QSOX1O00391 747 aa2.66□□□□□ -1.98
HMGB1-208ENST00000490788 PPM1DO15297 605 aa2.66□□□□□ -1.98
HMGB1-208ENST00000490788 SLC16A3O15427 465 aaKnown RBP2.66□□□□□ -1.98
HMGB1-208ENST00000490788 DNAJB5O75953 348 aa2.66□□□□□ -1.98
HMGB1-208ENST00000490788 ONECUT2O95948 504 aa2.66□□□□□ -1.98
HMGB1-208ENST00000490788 RHOP08100 348 aa2.66□□□□□ -1.98
HMGB1-208ENST00000490788 ZKSCAN1P17029 563 aaPredicted RBP2.66□□□□□ -1.98
HMGB1-208ENST00000490788 PPIFP30405 207 aaKnown RBP2.66□□□□□ -1.98
HMGB1-208ENST00000490788 SLC11A2P49281 568 aa2.66□□□□□ -1.98
HMGB1-208ENST00000490788 HNRNPMP52272 730 aaKnown RBP eCLIP2.66□□□□□ -1.98
HMGB1-208ENST00000490788 AGFG1P52594 562 aaKnown RBP2.66□□□□□ -1.98
HMGB1-208ENST00000490788 SOX10P56693 466 aa2.66□□□□□ -1.98
HMGB1-208ENST00000490788 WNT3P56703 355 aa2.66□□□□□ -1.98
HMGB1-208ENST00000490788 COL10A1Q03692 680 aa2.66□□□□□ -1.98
HMGB1-208ENST00000490788 TCF15Q12870 199 aa2.66□□□□□ -1.98
HMGB1-208ENST00000490788 KIAA0753Q2KHM9 967 aa2.66□□□□□ -1.98
HMGB1-208ENST00000490788 VPS53Q5VIR6 699 aa2.66□□□□□ -1.98
HMGB1-208ENST00000490788 KRTAP5-1Q6L8H4 278 aa2.66□□□□□ -1.98
HMGB1-208ENST00000490788 RGS7BPQ6MZT1 257 aaPredicted RBP2.66□□□□□ -1.98
HMGB1-208ENST00000490788 DARS2Q6PI48 645 aaKnown RBP2.66□□□□□ -1.98
HMGB1-208ENST00000490788 B3GNT9Q6UX72 402 aa2.66□□□□□ -1.98
HMGB1-208ENST00000490788 OVCH2Q7RTZ1 564 aa2.66□□□□□ -1.98
HMGB1-208ENST00000490788 ZNF551Q7Z340 670 aaPredicted RBP2.66□□□□□ -1.98
HMGB1-208ENST00000490788 TMPRSS9Q7Z410 1059 aa2.66□□□□□ -1.98
HMGB1-208ENST00000490788 SRGAP1Q7Z6B7 1085 aa2.66□□□□□ -1.98
HMGB1-208ENST00000490788 SLC15A3Q8IY34 581 aa2.66□□□□□ -1.98
HMGB1-208ENST00000490788 LRRC71Q8N4P6 559 aa2.66□□□□□ -1.98
HMGB1-208ENST00000490788 ZNF384Q8TF68 577 aa2.66□□□□□ -1.98
HMGB1-208ENST00000490788 LRRC59Q96AG4 307 aaKnown RBP2.66□□□□□ -1.98
HMGB1-208ENST00000490788 UROC1Q96N76 676 aa2.66□□□□□ -1.98
HMGB1-208ENST00000490788 DPCDQ9BVM2 203 aaPredicted RBP2.66□□□□□ -1.98
HMGB1-208ENST00000490788 LRRC27Q9C0I9 530 aa2.66□□□□□ -1.98
HMGB1-208ENST00000490788 MS4A7Q9GZW8 240 aaPredicted RBP2.66□□□□□ -1.98
HMGB1-208ENST00000490788 TMEM60Q9H2L4 133 aa2.66□□□□□ -1.98
HMGB1-208ENST00000490788 KLK15Q9H2R5 256 aa2.66□□□□□ -1.98
HMGB1-208ENST00000490788 SYNPO2LQ9H987 977 aa2.66□□□□□ -1.98
HMGB1-208ENST00000490788 ZMAT3Q9HA38 289 aaKnown RBP2.66□□□□□ -1.98
HMGB1-208ENST00000490788 GLOD4Q9HC38 313 aa2.66□□□□□ -1.98
HMGB1-208ENST00000490788 PRDM11Q9NQV5 511 aa2.66□□□□□ -1.98
HMGB1-208ENST00000490788 ARHGEF3Q9NR81 526 aa2.66□□□□□ -1.98
HMGB1-208ENST00000490788 IL17RBQ9NRM6 502 aa2.66□□□□□ -1.98
HMGB1-208ENST00000490788 SACM1LQ9NTJ5 587 aa2.66□□□□□ -1.98
HMGB1-208ENST00000490788 TRMT13Q9NUP7 481 aaKnown RBP2.66□□□□□ -1.98
HMGB1-208ENST00000490788 ASB6Q9NWX5 421 aa2.66□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms