RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 DNMT3BQ9UBC3 853 aaKnown RBP8.54□□□□□ -1.04
USP40-216ENST00000485943 ZMYM5Q9UJ78 669 aa8.54□□□□□ -1.04
USP40-216ENST00000485943 CDH7Q9ULB5 785 aa8.54□□□□□ -1.04
USP40-216ENST00000485943 CEP83Q9Y592 693 aa8.54□□□□□ -1.04
USP40-216ENST00000485943 PCDHB4Q9Y5E5 795 aa8.54□□□□□ -1.04
USP40-216ENST00000485943 PRUNE2Q8WUY3 3088 aa8.53□□□□□ -1.04
USP40-216ENST00000485943 TSC2P49815 1807 aa8.53□□□□□ -1.04
USP40-216ENST00000485943 A0A1W2PRU2 124 aa8.53□□□□□ -1.04
USP40-216ENST00000485943 KCNJ18B7U540 433 aa8.53□□□□□ -1.04
USP40-216ENST00000485943 P4HA2O15460 535 aa8.53□□□□□ -1.04
USP40-216ENST00000485943 MED7O43513 233 aa8.53□□□□□ -1.04
USP40-216ENST00000485943 RTN3O95197 1032 aaPredicted RBP8.53□□□□□ -1.04
USP40-216ENST00000485943 SEC24AO95486 1093 aa8.53□□□□□ -1.04
USP40-216ENST00000485943 EFEMP2O95967 443 aa8.53□□□□□ -1.04
USP40-216ENST00000485943 ASS1P00966 412 aaKnown RBP8.53□□□□□ -1.04
USP40-216ENST00000485943 CKMP06732 381 aa8.53□□□□□ -1.04
USP40-216ENST00000485943 FAM200BP0CF97 657 aa8.53□□□□□ -1.04
USP40-216ENST00000485943 CYP2F1P24903 491 aa8.53□□□□□ -1.04
USP40-216ENST00000485943 MCCD1P59942 119 aaPredicted RBP8.53□□□□□ -1.04
USP40-216ENST00000485943 CLDN10P78369 228 aa8.53□□□□□ -1.04
USP40-216ENST00000485943 NTHL1P78549 312 aa8.53□□□□□ -1.04
USP40-216ENST00000485943 PPP3CAQ08209 521 aa8.53□□□□□ -1.04
USP40-216ENST00000485943 GOLGA8FQ08AF8 430 aa8.53□□□□□ -1.04
USP40-216ENST00000485943 GOLGA8DPQ0D2H9 430 aa8.53□□□□□ -1.04
USP40-216ENST00000485943 KCNC3Q14003 757 aa8.53□□□□□ -1.04
USP40-216ENST00000485943 KCNJ12Q14500 433 aa8.53□□□□□ -1.04
USP40-216ENST00000485943 SYCP1Q15431 976 aa8.53□□□□□ -1.04
USP40-216ENST00000485943 MAN2A1Q16706 1144 aa8.53□□□□□ -1.04
USP40-216ENST00000485943 DDR2Q16832 855 aa8.53□□□□□ -1.04
USP40-216ENST00000485943 EXOC3L4Q17RC7 722 aa8.53□□□□□ -1.04
USP40-216ENST00000485943 LINC01559Q495D7 138 aa8.53□□□□□ -1.04
USP40-216ENST00000485943 GPR158Q5T848 1215 aa8.53□□□□□ -1.04
USP40-216ENST00000485943 TTI2Q6NXR4 508 aa8.53□□□□□ -1.04
USP40-216ENST00000485943 FOXR2Q6PJQ5 311 aa8.53□□□□□ -1.04
USP40-216ENST00000485943 DENND5BQ6ZUT9 1274 aa8.53□□□□□ -1.04
USP40-216ENST00000485943 DNAJB7Q7Z6W7 309 aaPredicted RBP8.53□□□□□ -1.04
USP40-216ENST00000485943 UBALD2Q8IYN6 164 aa8.53□□□□□ -1.04
USP40-216ENST00000485943 ZDHHC14Q8IZN3 488 aa8.53□□□□□ -1.04
USP40-216ENST00000485943 ZNF511Q8NB15 262 aa8.53□□□□□ -1.04
USP40-216ENST00000485943 GPT2Q8TD30 523 aa8.53□□□□□ -1.04
USP40-216ENST00000485943 GPR152Q8TDT2 470 aa8.53□□□□□ -1.04
USP40-216ENST00000485943 CSGALNACT1Q8TDX6 532 aa8.53□□□□□ -1.04
USP40-216ENST00000485943 FGF13Q92913 245 aa8.53□□□□□ -1.04
USP40-216ENST00000485943 PSMG2Q969U7 264 aa8.53□□□□□ -1.04
USP40-216ENST00000485943 EXOC4Q96A65 974 aa8.53□□□□□ -1.04
USP40-216ENST00000485943 E2F7Q96AV8 911 aa8.53□□□□□ -1.04
USP40-216ENST00000485943 PCED1BQ96HM7 432 aa8.53□□□□□ -1.04
USP40-216ENST00000485943 BRD9Q9H8M2 597 aa8.53□□□□□ -1.04
USP40-216ENST00000485943 VRTNQ9H8Y1 702 aa8.53□□□□□ -1.04
USP40-216ENST00000485943 ZFP14Q9HCL3 533 aa8.53□□□□□ -1.04
USP40-216ENST00000485943 DMAP1Q9NPF5 467 aaPredicted RBP8.53□□□□□ -1.04
USP40-216ENST00000485943 KRT82Q9NSB4 513 aa8.53□□□□□ -1.04
USP40-216ENST00000485943 FAM49BQ9NUQ9 324 aa8.53□□□□□ -1.04
USP40-216ENST00000485943 GDE1Q9NZC3 331 aa8.53□□□□□ -1.04
USP40-216ENST00000485943 TRPM5Q9NZQ8 1165 aa8.53□□□□□ -1.04
USP40-216ENST00000485943 MUTYHQ9UIF7 546 aa8.53□□□□□ -1.04
USP40-216ENST00000485943 CDH22Q9UJ99 828 aa8.53□□□□□ -1.04
USP40-216ENST00000485943 SORCS3Q9UPU3 1222 aa8.53□□□□□ -1.04
USP40-216ENST00000485943 NFE2L3Q9Y4A8 694 aa8.53□□□□□ -1.04
USP40-216ENST00000485943 EYSQ5T1H1 3165 aa8.53□□□□□ -1.04
USP40-216ENST00000485943 TRAV19A0A0A6YYK7 116 aa8.52□□□□□ -1.05
USP40-216ENST00000485943 MYBPHLA2RUH7 354 aa8.52□□□□□ -1.05
USP40-216ENST00000485943 SLC38A8A6NNN8 435 aa8.52□□□□□ -1.05
USP40-216ENST00000485943 F8VP50 259 aa8.52□□□□□ -1.05
USP40-216ENST00000485943 GABRDO14764 452 aa8.52□□□□□ -1.05
USP40-216ENST00000485943 ATP2C2O75185 946 aa8.52□□□□□ -1.05
USP40-216ENST00000485943 ASGR2P07307 311 aa8.52□□□□□ -1.05
USP40-216ENST00000485943 POU2F2P09086 479 aa8.52□□□□□ -1.05
USP40-216ENST00000485943 LAMP2P13473 410 aa8.52□□□□□ -1.05
USP40-216ENST00000485943 LMO2P25791 158 aa8.52□□□□□ -1.05
USP40-216ENST00000485943 DDX6P26196 483 aaKnown RBP eCLIP8.52□□□□□ -1.05
USP40-216ENST00000485943 EEF1GP26641 437 aaKnown RBP8.52□□□□□ -1.05
USP40-216ENST00000485943 MAGEA11P43364 429 aa8.52□□□□□ -1.05
USP40-216ENST00000485943 PFKPQ01813 784 aa8.52□□□□□ -1.05
USP40-216ENST00000485943 MYL5Q02045 173 aa8.52□□□□□ -1.05
USP40-216ENST00000485943 ORC1Q13415 861 aa8.52□□□□□ -1.05
USP40-216ENST00000485943 TDGQ13569 410 aa8.52□□□□□ -1.05
USP40-216ENST00000485943 RAPGEF1Q13905 1077 aa8.52□□□□□ -1.05
USP40-216ENST00000485943 CFAP221Q4G0U5 840 aa8.52□□□□□ -1.05
USP40-216ENST00000485943 SGO2Q562F6 1265 aa8.52□□□□□ -1.05
USP40-216ENST00000485943 SDHAF4Q5VUM1 108 aa8.52□□□□□ -1.05
USP40-216ENST00000485943 TMEM270Q6UE05 265 aa8.52□□□□□ -1.05
USP40-216ENST00000485943 TADA2BQ86TJ2 420 aa8.52□□□□□ -1.05
USP40-216ENST00000485943 OSTM1Q86WC4 334 aa8.52□□□□□ -1.05
USP40-216ENST00000485943 PDZD8Q8NEN9 1154 aa8.52□□□□□ -1.05
USP40-216ENST00000485943 PLEKHO2Q8TD55 490 aa8.52□□□□□ -1.05
USP40-216ENST00000485943 ZNF592Q92610 1267 aa8.52□□□□□ -1.05
USP40-216ENST00000485943 FOXJ1Q92949 421 aa8.52□□□□□ -1.05
USP40-216ENST00000485943 FBXO32Q969P5 355 aa8.52□□□□□ -1.05
USP40-216ENST00000485943 ZNF707Q96C28 371 aaPredicted RBP8.52□□□□□ -1.05
USP40-216ENST00000485943 CYFIP2Q96F07 1278 aa8.52□□□□□ -1.05
USP40-216ENST00000485943 FAXDC2Q96IV6 333 aa8.52□□□□□ -1.05
USP40-216ENST00000485943 SHDQ96IW2 340 aa8.52□□□□□ -1.05
USP40-216ENST00000485943 TUBGCP2Q9BSJ2 902 aa8.52□□□□□ -1.05
USP40-216ENST00000485943 RHOBTB2Q9BYZ6 727 aa8.52□□□□□ -1.05
USP40-216ENST00000485943 FBXO44Q9H4M3 255 aa8.52□□□□□ -1.05
USP40-216ENST00000485943 UBE2TQ9NPD8 197 aaPredicted RBP8.52□□□□□ -1.05
USP40-216ENST00000485943 CISHQ9NSE2 258 aa8.52□□□□□ -1.05
USP40-216ENST00000485943 MYO10Q9HD67 2058 aa8.51□□□□□ -1.05
USP40-216ENST00000485943 LOC730098B7Z3J9 87 aa8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms