RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 NT5DC1Q5TFE4 455 aa5.23□□□□□ -1.57
USP4-209ENST00000475873 SDHAF4Q5VUM1 108 aa5.23□□□□□ -1.57
USP4-209ENST00000475873 RHBDF2Q6PJF5 856 aa5.23□□□□□ -1.57
USP4-209ENST00000475873 IL27RAQ6UWB1 636 aa5.23□□□□□ -1.57
USP4-209ENST00000475873 KDM7AQ6ZMT4 941 aa5.23□□□□□ -1.57
USP4-209ENST00000475873 RALYLQ86SE5 291 aaKnown RBP5.23□□□□□ -1.57
USP4-209ENST00000475873 ITIH5Q86UX2 942 aa5.23□□□□□ -1.57
USP4-209ENST00000475873 LRRTM3Q86VH5 581 aa5.23□□□□□ -1.57
USP4-209ENST00000475873 C4orf19Q8IY42 314 aa5.23□□□□□ -1.57
USP4-209ENST00000475873 SRRM1Q8IYB3 904 aaKnown RBP5.23□□□□□ -1.57
USP4-209ENST00000475873 REXO1Q8N1G1 1221 aaKnown RBP5.23□□□□□ -1.57
USP4-209ENST00000475873 NCOA7Q8NI08 942 aa5.23□□□□□ -1.57
USP4-209ENST00000475873 CCDC26Q8TAB7 109 aa5.23□□□□□ -1.57
USP4-209ENST00000475873 IPO4Q8TEX9 1081 aaKnown RBP5.23□□□□□ -1.57
USP4-209ENST00000475873 FOXJ1Q92949 421 aa5.23□□□□□ -1.57
USP4-209ENST00000475873 IGSF8Q969P0 613 aa5.23□□□□□ -1.57
USP4-209ENST00000475873 EXOC4Q96A65 974 aa5.23□□□□□ -1.57
USP4-209ENST00000475873 CNDP2Q96KP4 475 aaKnown RBP5.23□□□□□ -1.57
USP4-209ENST00000475873 PRIMPOLQ96LW4 560 aa5.23□□□□□ -1.57
USP4-209ENST00000475873 PNKPQ96T60 521 aa5.23□□□□□ -1.57
USP4-209ENST00000475873 SEPT5Q99719 369 aaPredicted RBP5.23□□□□□ -1.57
USP4-209ENST00000475873 ORAI3Q9BRQ5 295 aa5.23□□□□□ -1.57
USP4-209ENST00000475873 POLR3FQ9H1D9 316 aaPredicted RBP5.23□□□□□ -1.57
USP4-209ENST00000475873 USP36Q9P275 1121 aaKnown RBP5.23□□□□□ -1.57
USP4-209ENST00000475873 TUBGCP4Q9UGJ1 667 aa5.23□□□□□ -1.57
USP4-209ENST00000475873 SEPT3Q9UH03 358 aa5.23□□□□□ -1.57
USP4-209ENST00000475873 PLAAQ9Y263 795 aa5.23□□□□□ -1.57
USP4-209ENST00000475873 ANKRD6Q9Y2G4 727 aa5.23□□□□□ -1.57
USP4-209ENST00000475873 PPME1Q9Y570 386 aa5.23□□□□□ -1.57
USP4-209ENST00000475873 NUB1Q9Y5A7 615 aa5.23□□□□□ -1.57
USP4-209ENST00000475873 DOCK9Q9BZ29 2069 aa5.23□□□□□ -1.57
USP4-209ENST00000475873 LRRK1Q38SD2 2015 aa5.23□□□□□ -1.57
USP4-209ENST00000475873 E2F8A0AVK6 867 aa5.22□□□□□ -1.57
USP4-209ENST00000475873 LRRIQ4A6NIV6 560 aa5.22□□□□□ -1.57
USP4-209ENST00000475873 OR6C75A6NL08 312 aa5.22□□□□□ -1.57
USP4-209ENST00000475873 WASH3PC4AMC7 463 aa5.22□□□□□ -1.57
USP4-209ENST00000475873 ABLIM1O14639 778 aa5.22□□□□□ -1.57
USP4-209ENST00000475873 PPEF2O14830 753 aa5.22□□□□□ -1.57
USP4-209ENST00000475873 NDUFS2O75306 463 aa5.22□□□□□ -1.57
USP4-209ENST00000475873 ZNF217O75362 1048 aa5.22□□□□□ -1.57
USP4-209ENST00000475873 NFATC1O95644 943 aa5.22□□□□□ -1.57
USP4-209ENST00000475873 APODP05090 189 aa5.22□□□□□ -1.57
USP4-209ENST00000475873 P4HBP07237 508 aaKnown RBP5.22□□□□□ -1.57
USP4-209ENST00000475873 C1SP09871 688 aa5.22□□□□□ -1.57
USP4-209ENST00000475873 KCNE1P15382 129 aa5.22□□□□□ -1.57
USP4-209ENST00000475873 DDX6P26196 483 aaKnown RBP eCLIP5.22□□□□□ -1.57
USP4-209ENST00000475873 CDC27P30260 824 aa5.22□□□□□ -1.57
USP4-209ENST00000475873 DCTP40126 519 aa5.22□□□□□ -1.57
USP4-209ENST00000475873 GRIA2P42262 883 aa5.22□□□□□ -1.57
USP4-209ENST00000475873 CTSKP43235 329 aa5.22□□□□□ -1.57
USP4-209ENST00000475873 TNFRSF4P43489 277 aa5.22□□□□□ -1.57
USP4-209ENST00000475873 CCT8P50990 548 aa5.22□□□□□ -1.57
USP4-209ENST00000475873 GABREP78334 506 aa5.22□□□□□ -1.57
USP4-209ENST00000475873 CLN3Q13286 438 aa5.22□□□□□ -1.57
USP4-209ENST00000475873 DMP1Q13316 513 aaPredicted RBP5.22□□□□□ -1.57
USP4-209ENST00000475873 PPP2R5CQ13362 524 aa5.22□□□□□ -1.57
USP4-209ENST00000475873 CTTNQ14247 550 aaKnown RBP5.22□□□□□ -1.57
USP4-209ENST00000475873 CLCA4Q14CN2 919 aa5.22□□□□□ -1.57
USP4-209ENST00000475873 SUZ12Q15022 739 aaKnown RBP5.22□□□□□ -1.57
USP4-209ENST00000475873 MGAT5BQ3V5L5 792 aa5.22□□□□□ -1.57
USP4-209ENST00000475873 PTRH1Q86Y79 214 aaKnown RBP5.22□□□□□ -1.57
USP4-209ENST00000475873 ETFBKMTQ8IXQ9 262 aa5.22□□□□□ -1.57
USP4-209ENST00000475873 ADGRG2Q8IZP9 1017 aa5.22□□□□□ -1.57
USP4-209ENST00000475873 CACTIN-AS1Q8N1I8 211 aa5.22□□□□□ -1.57
USP4-209ENST00000475873 ARL14EPQ8N8R7 260 aaPredicted RBP5.22□□□□□ -1.57
USP4-209ENST00000475873 APPL2Q8NEU8 664 aa5.22□□□□□ -1.57
USP4-209ENST00000475873 PRR11Q96HE9 360 aaPredicted RBP5.22□□□□□ -1.57
USP4-209ENST00000475873 DYDC2Q96IM9 177 aa5.22□□□□□ -1.57
USP4-209ENST00000475873 GCNAQ96QF7 691 aa5.22□□□□□ -1.57
USP4-209ENST00000475873 SEMA3CQ99985 751 aa5.22□□□□□ -1.57
USP4-209ENST00000475873 KIFC3Q9BVG8 833 aa5.22□□□□□ -1.57
USP4-209ENST00000475873 DPH1Q9BZG8 443 aa5.22□□□□□ -1.57
USP4-209ENST00000475873 TRIM9Q9C026 710 aa5.22□□□□□ -1.57
USP4-209ENST00000475873 MKRN2Q9H000 416 aaKnown RBP5.22□□□□□ -1.57
USP4-209ENST00000475873 ARHGEF4Q9NR80 690 aa5.22□□□□□ -1.57
USP4-209ENST00000475873 PRMT7Q9NVM4 692 aaPredicted RBP5.22□□□□□ -1.57
USP4-209ENST00000475873 BRPF3Q9ULD4 1205 aa5.22□□□□□ -1.57
USP4-209ENST00000475873 CLCA2Q9UQC9 943 aa5.22□□□□□ -1.57
USP4-209ENST00000475873 SCN1AP35498 2009 aa5.21□□□□□ -1.57
USP4-209ENST00000475873 CYP3A7-CYP3A51PA0A087WV96 503 aa5.21□□□□□ -1.58
USP4-209ENST00000475873 A0A1B0GTQ1 180 aa5.21□□□□□ -1.58
USP4-209ENST00000475873 A1L4Q6 167 aa5.21□□□□□ -1.58
USP4-209ENST00000475873 WIPF3A6NGB9 483 aa5.21□□□□□ -1.58
USP4-209ENST00000475873 CCDC69A6NI79 296 aa5.21□□□□□ -1.58
USP4-209ENST00000475873 hCG_1984214I3L0E3 225 aa5.21□□□□□ -1.58
USP4-209ENST00000475873 ACKR2O00590 384 aa5.21□□□□□ -1.58
USP4-209ENST00000475873 LDOC1O95751 146 aaPredicted RBP5.21□□□□□ -1.58
USP4-209ENST00000475873 HAPLN1P10915 354 aaPredicted RBP5.21□□□□□ -1.58
USP4-209ENST00000475873 MS4A1P11836 297 aa5.21□□□□□ -1.58
USP4-209ENST00000475873 TCF3P15923 654 aa5.21□□□□□ -1.58
USP4-209ENST00000475873 WT1P19544 449 aaPredicted RBP5.21□□□□□ -1.58
USP4-209ENST00000475873 CYP3A7P24462 503 aa5.21□□□□□ -1.58
USP4-209ENST00000475873 NTSR1P30989 418 aa5.21□□□□□ -1.58
USP4-209ENST00000475873 RPL9P32969 192 aaKnown RBP5.21□□□□□ -1.58
USP4-209ENST00000475873 HSPA4P34932 840 aa5.21□□□□□ -1.58
USP4-209ENST00000475873 EIF2DP41214 584 aaKnown RBP5.21□□□□□ -1.58
USP4-209ENST00000475873 GRM5P41594 1212 aa5.21□□□□□ -1.58
USP4-209ENST00000475873 LIFRP42702 1097 aa5.21□□□□□ -1.58
USP4-209ENST00000475873 AFF3P51826 1226 aaKnown RBP5.21□□□□□ -1.58
USP4-209ENST00000475873 GUCY2FP51841 1108 aa5.21□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms