RNA–Protein interactions for RNA: ENST00000473829.1

PTCD3-210, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-210ENST00000473829 AFPP02771 609 aaKnown RBP20.09■□□□□ 0.81
PTCD3-210ENST00000473829 COL9A1P20849 921 aa20.09■□□□□ 0.81
PTCD3-210ENST00000473829 RAD23BP54727 409 aa20.09■□□□□ 0.81
PTCD3-210ENST00000473829 SLC4A11Q8NBS3 891 aa20.09■□□□□ 0.81
PTCD3-210ENST00000473829 MRPS31Q92665 395 aaKnown RBP20.09■□□□□ 0.81
PTCD3-210ENST00000473829 KAT5Q92993 513 aa20.09■□□□□ 0.81
PTCD3-210ENST00000473829 SLC22A12Q96S37 553 aa20.09■□□□□ 0.81
PTCD3-210ENST00000473829 DMAP1Q9NPF5 467 aaPredicted RBP20.09■□□□□ 0.81
PTCD3-210ENST00000473829 ARHGEF3Q9NR81 526 aa20.09■□□□□ 0.81
PTCD3-210ENST00000473829 C2orf78A6NCI8 922 aa20.08■□□□□ 0.81
PTCD3-210ENST00000473829 P4HA2O15460 535 aa20.08■□□□□ 0.81
PTCD3-210ENST00000473829 PSMC3P17980 439 aa20.08■□□□□ 0.81
PTCD3-210ENST00000473829 ERCC5P28715 1186 aaPredicted RBP20.08■□□□□ 0.81
PTCD3-210ENST00000473829 WEE1P30291 646 aa20.08■□□□□ 0.81
PTCD3-210ENST00000473829 MAP3K7CLP57077 242 aa20.08■□□□□ 0.81
PTCD3-210ENST00000473829 IFRD2Q12894 506 aaPredicted RBP20.08■□□□□ 0.81
PTCD3-210ENST00000473829 MON1AQ86VX9 555 aa20.08■□□□□ 0.81
PTCD3-210ENST00000473829 ARHGEF19Q8IW93 802 aa20.08■□□□□ 0.81
PTCD3-210ENST00000473829 MFSD6LQ8IWD5 586 aa20.08■□□□□ 0.81
PTCD3-210ENST00000473829 CMTM8Q8IZV2 173 aa20.08■□□□□ 0.81
PTCD3-210ENST00000473829 SCAMP5Q8TAC9 235 aa20.08■□□□□ 0.81
PTCD3-210ENST00000473829 RIN3Q8TB24 985 aa20.08■□□□□ 0.81
PTCD3-210ENST00000473829 DEPDC1BQ8WUY9 529 aa20.08■□□□□ 0.81
PTCD3-210ENST00000473829 CYFIP2Q96F07 1278 aa20.08■□□□□ 0.81
PTCD3-210ENST00000473829 NT5C1BQ96P26 610 aa20.08■□□□□ 0.81
PTCD3-210ENST00000473829 HNRNPABQ99729 332 aaKnown RBP20.08■□□□□ 0.81
PTCD3-210ENST00000473829 CSNK1G1Q9HCP0 422 aa20.08■□□□□ 0.81
PTCD3-210ENST00000473829 CCL26Q9Y258 94 aa20.08■□□□□ 0.81
PTCD3-210ENST00000473829 MBD3O95983 291 aa20.07■□□□□ 0.8
PTCD3-210ENST00000473829 DDX6P26196 483 aaKnown RBP eCLIP20.07■□□□□ 0.8
PTCD3-210ENST00000473829 GDI1P31150 447 aa20.07■□□□□ 0.8
PTCD3-210ENST00000473829 SLC5A3P53794 718 aa20.07■□□□□ 0.8
PTCD3-210ENST00000473829 PPP1R26Q5T8A7 1209 aaPredicted RBP20.07■□□□□ 0.8
PTCD3-210ENST00000473829 CLEC20AQ6ZU45 233 aa20.07■□□□□ 0.8
PTCD3-210ENST00000473829 CREBRFQ8IUR6 639 aa20.07■□□□□ 0.8
PTCD3-210ENST00000473829 SUGP1Q8IWZ8 645 aaKnown RBP20.07■□□□□ 0.8
PTCD3-210ENST00000473829 NUP93Q8N1F7 819 aa20.07■□□□□ 0.8
PTCD3-210ENST00000473829 FLCNQ8NFG4 579 aa20.07■□□□□ 0.8
PTCD3-210ENST00000473829 USP13Q92995 863 aaPredicted RBP20.07■□□□□ 0.8
PTCD3-210ENST00000473829 TMEM176AQ96HP8 235 aa20.07■□□□□ 0.8
PTCD3-210ENST00000473829 TRMT61BQ9BVS5 477 aaKnown RBP20.07■□□□□ 0.8
PTCD3-210ENST00000473829 INTS2Q9H0H0 1204 aaKnown RBP20.07■□□□□ 0.8
PTCD3-210ENST00000473829 MFSD1Q9H3U5 465 aa20.07■□□□□ 0.8
PTCD3-210ENST00000473829 THAP9Q9H5L6 903 aa20.07■□□□□ 0.8
PTCD3-210ENST00000473829 TRPC7Q9HCX4 862 aa20.07■□□□□ 0.8
PTCD3-210ENST00000473829 DACH1Q9UI36 760 aa20.07■□□□□ 0.8
PTCD3-210ENST00000473829 ARNTLO00327 626 aa20.06■□□□□ 0.8
PTCD3-210ENST00000473829 FAM200BP0CF97 657 aa20.06■□□□□ 0.8
PTCD3-210ENST00000473829 FCHO2Q0JRZ9 810 aa20.06■□□□□ 0.8
PTCD3-210ENST00000473829 TAF10Q12962 218 aa20.06■□□□□ 0.8
PTCD3-210ENST00000473829 TPD52L1Q16890 204 aaPredicted RBP20.06■□□□□ 0.8
PTCD3-210ENST00000473829 HSP90AA4PQ58FG1 418 aa20.06■□□□□ 0.8
PTCD3-210ENST00000473829 GPRIN1Q7Z2K8 1008 aa20.06■□□□□ 0.8
PTCD3-210ENST00000473829 PPM1KQ8N3J5 372 aa20.06■□□□□ 0.8
PTCD3-210ENST00000473829 TTC39CQ8N584 583 aa20.06■□□□□ 0.8
PTCD3-210ENST00000473829 TMEM105Q8N8V8 129 aa20.06■□□□□ 0.8
PTCD3-210ENST00000473829 EHBP1Q8NDI1 1231 aa20.06■□□□□ 0.8
PTCD3-210ENST00000473829 E2F7Q96AV8 911 aa20.06■□□□□ 0.8
PTCD3-210ENST00000473829 HEXIM2Q96MH2 286 aaKnown RBP20.06■□□□□ 0.8
PTCD3-210ENST00000473829 CYP2S1Q96SQ9 504 aa20.06■□□□□ 0.8
PTCD3-210ENST00000473829 FAM124BQ9H5Z6 455 aaPredicted RBP20.06■□□□□ 0.8
PTCD3-210ENST00000473829 BRD9Q9H8M2 597 aa20.06■□□□□ 0.8
PTCD3-210ENST00000473829 GCNT4Q9P109 453 aa20.06■□□□□ 0.8
PTCD3-210ENST00000473829 TMEM63CQ9P1W3 806 aa20.06■□□□□ 0.8
PTCD3-210ENST00000473829 ZNF840PA6NDX5 716 aa20.05■□□□□ 0.8
PTCD3-210ENST00000473829 HHLA1C9JL84 531 aa20.05■□□□□ 0.8
PTCD3-210ENST00000473829 ACO1P21399 889 aaKnown RBP20.05■□□□□ 0.8
PTCD3-210ENST00000473829 TBXAS1P24557 533 aaPredicted RBP20.05■□□□□ 0.8
PTCD3-210ENST00000473829 AVPR1AP37288 418 aa20.05■□□□□ 0.8
PTCD3-210ENST00000473829 PFKPQ01813 784 aa20.05■□□□□ 0.8
PTCD3-210ENST00000473829 CETN1Q12798 172 aa20.05■□□□□ 0.8
PTCD3-210ENST00000473829 SLC44A4Q53GD3 710 aa20.05■□□□□ 0.8
PTCD3-210ENST00000473829 CCDC183Q5T5S1 534 aa20.05■□□□□ 0.8
PTCD3-210ENST00000473829 ARL14EPQ8N8R7 260 aaPredicted RBP20.05■□□□□ 0.8
PTCD3-210ENST00000473829 DNASE1L2Q92874 299 aa20.05■□□□□ 0.8
PTCD3-210ENST00000473829 JAKMIP2Q96AA8 810 aa20.05■□□□□ 0.8
PTCD3-210ENST00000473829 ZFYVE19Q96K21 471 aa20.05■□□□□ 0.8
PTCD3-210ENST00000473829 TBC1D17Q9HA65 648 aa20.05■□□□□ 0.8
PTCD3-210ENST00000473829 OBP2AQ9NY56 170 aa20.05■□□□□ 0.8
PTCD3-210ENST00000473829 IL37Q9NZH6 218 aa20.05■□□□□ 0.8
PTCD3-210ENST00000473829 ZMYM5Q9UJ78 669 aa20.05■□□□□ 0.8
PTCD3-210ENST00000473829 SHISA7A6NL88 538 aa20.04■□□□□ 0.8
PTCD3-210ENST00000473829 SOBPA7XYQ1 873 aa20.04■□□□□ 0.8
PTCD3-210ENST00000473829 DPYSL4O14531 572 aa20.04■□□□□ 0.8
PTCD3-210ENST00000473829 PI15O43692 258 aa20.04■□□□□ 0.8
PTCD3-210ENST00000473829 RTN3O95197 1032 aaPredicted RBP20.04■□□□□ 0.8
PTCD3-210ENST00000473829 TRIM21P19474 475 aaKnown RBP20.04■□□□□ 0.8
PTCD3-210ENST00000473829 YWHAQP27348 245 aa20.04■□□□□ 0.8
PTCD3-210ENST00000473829 AVPR2P30518 371 aa20.04■□□□□ 0.8
PTCD3-210ENST00000473829 MTIF2P46199 727 aaKnown RBP20.04■□□□□ 0.8
PTCD3-210ENST00000473829 MLF2Q15773 248 aaPredicted RBP20.04■□□□□ 0.8
PTCD3-210ENST00000473829 ASTLQ6HA08 431 aaPredicted RBP20.04■□□□□ 0.8
PTCD3-210ENST00000473829 PHLDB3Q6NSJ2 640 aa20.04■□□□□ 0.8
PTCD3-210ENST00000473829 C11orf57Q6ZUT1 292 aaPredicted RBP20.04■□□□□ 0.8
PTCD3-210ENST00000473829 RRAGAQ7L523 313 aa20.04■□□□□ 0.8
PTCD3-210ENST00000473829 CELF5Q8N6W0 485 aaKnown RBP20.04■□□□□ 0.8
PTCD3-210ENST00000473829 BPIFB1Q8TDL5 484 aa20.04■□□□□ 0.8
PTCD3-210ENST00000473829 FBXO32Q969P5 355 aa20.04■□□□□ 0.8
PTCD3-210ENST00000473829 KREMEN1Q96MU8 473 aa20.04■□□□□ 0.8
PTCD3-210ENST00000473829 CRACR2AQ9BSW2 395 aa20.04■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms