RNA–Protein interactions for RNA: ENST00000473191.1

USP40-212, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-212ENST00000473191 CKMP06732 381 aa17.77■□□□□ 0.44
USP40-212ENST00000473191 ATICP31939 592 aa17.77■□□□□ 0.44
USP40-212ENST00000473191 CXCL12P48061 93 aa17.77■□□□□ 0.44
USP40-212ENST00000473191 FNTBP49356 437 aa17.77■□□□□ 0.44
USP40-212ENST00000473191 CCR3P51677 355 aa17.77■□□□□ 0.44
USP40-212ENST00000473191 IFRD2Q12894 506 aaPredicted RBP17.77■□□□□ 0.44
USP40-212ENST00000473191 USP4Q13107 963 aa17.77■□□□□ 0.44
USP40-212ENST00000473191 ZNF268Q14587 947 aaPredicted RBP17.77■□□□□ 0.44
USP40-212ENST00000473191 ZNF699Q32M78 642 aa17.77■□□□□ 0.44
USP40-212ENST00000473191 HEATR6Q6AI08 1181 aaKnown RBP17.77■□□□□ 0.44
USP40-212ENST00000473191 KRBA2Q6ZNG9 492 aa17.77■□□□□ 0.44
USP40-212ENST00000473191 SH3RF2Q8TEC5 729 aa17.77■□□□□ 0.44
USP40-212ENST00000473191 RUBCNQ92622 972 aa17.77■□□□□ 0.44
USP40-212ENST00000473191 EZH1Q92800 747 aaPredicted RBP17.77■□□□□ 0.44
USP40-212ENST00000473191 SYAP1Q96A49 352 aaPredicted RBP17.77■□□□□ 0.44
USP40-212ENST00000473191 EPC1Q9H2F5 836 aa17.77■□□□□ 0.44
USP40-212ENST00000473191 VRTNQ9H8Y1 702 aa17.77■□□□□ 0.44
USP40-212ENST00000473191 KIF9Q9HAQ2 790 aa17.77■□□□□ 0.44
USP40-212ENST00000473191 SMG5Q9UPR3 1016 aaKnown RBP17.77■□□□□ 0.44
USP40-212ENST00000473191 FAM186AA6NE01 2351 aa17.77■□□□□ 0.44
USP40-212ENST00000473191 PTPRZ1P23471 2315 aaPredicted RBP17.77■□□□□ 0.43
USP40-212ENST00000473191 HELZP42694 1942 aaKnown RBP17.76■□□□□ 0.43
USP40-212ENST00000473191 PDXKO00764 312 aa17.76■□□□□ 0.43
USP40-212ENST00000473191 HRO43593 1189 aa17.76■□□□□ 0.43
USP40-212ENST00000473191 AKAP3O75969 853 aa17.76■□□□□ 0.43
USP40-212ENST00000473191 RHOBTB3O94955 611 aa17.76■□□□□ 0.43
USP40-212ENST00000473191 USP17L7P0C7H9 530 aa17.76■□□□□ 0.43
USP40-212ENST00000473191 HDCP19113 662 aa17.76■□□□□ 0.43
USP40-212ENST00000473191 GALK1P51570 392 aa17.76■□□□□ 0.43
USP40-212ENST00000473191 LRRC32Q14392 662 aa17.76■□□□□ 0.43
USP40-212ENST00000473191 MAPRE1Q15691 268 aaKnown RBP17.76■□□□□ 0.43
USP40-212ENST00000473191 TMEM196Q5HYL7 178 aa17.76■□□□□ 0.43
USP40-212ENST00000473191 SV2AQ7L0J3 742 aa17.76■□□□□ 0.43
USP40-212ENST00000473191 SMYD4Q8IYR2 804 aaPredicted RBP17.76■□□□□ 0.43
USP40-212ENST00000473191 SPEM1Q8N4L4 309 aa17.76■□□□□ 0.43
USP40-212ENST00000473191 GOLGA5Q8TBA6 731 aa17.76■□□□□ 0.43
USP40-212ENST00000473191 TMEM174Q8WUU8 243 aa17.76■□□□□ 0.43
USP40-212ENST00000473191 RMDN1Q96DB5 314 aa17.76■□□□□ 0.43
USP40-212ENST00000473191 C8orf48Q96LL4 319 aa17.76■□□□□ 0.43
USP40-212ENST00000473191 TTLL2Q9BWV7 592 aa17.76■□□□□ 0.43
USP40-212ENST00000473191 USP25Q9UHP3 1055 aa17.76■□□□□ 0.43
USP40-212ENST00000473191 ZMYM5Q9UJ78 669 aa17.76■□□□□ 0.43
USP40-212ENST00000473191 RIF1Q5UIP0 2472 aaKnown RBP17.75■□□□□ 0.43
USP40-212ENST00000473191 ZNF840PA6NDX5 716 aa17.75■□□□□ 0.43
USP40-212ENST00000473191 SOBPA7XYQ1 873 aa17.75■□□□□ 0.43
USP40-212ENST00000473191 TRIM66O15016 1216 aa17.75■□□□□ 0.43
USP40-212ENST00000473191 BEST1O76090 585 aa17.75■□□□□ 0.43
USP40-212ENST00000473191 CLSTN1O94985 981 aa17.75■□□□□ 0.43
USP40-212ENST00000473191 ZNF202O95125 648 aa17.75■□□□□ 0.43
USP40-212ENST00000473191 TRIM49P0CI25 452 aa17.75■□□□□ 0.43
USP40-212ENST00000473191 TRIM49CP0CI26 452 aa17.75■□□□□ 0.43
USP40-212ENST00000473191 ANXA13P27216 316 aa17.75■□□□□ 0.43
USP40-212ENST00000473191 GJA4P35212 333 aa17.75■□□□□ 0.43
USP40-212ENST00000473191 PXNP49023 591 aaPredicted RBP17.75■□□□□ 0.43
USP40-212ENST00000473191 NOP14P78316 857 aaKnown RBP17.75■□□□□ 0.43
USP40-212ENST00000473191 TAF10Q12962 218 aa17.75■□□□□ 0.43
USP40-212ENST00000473191 EML3Q32P44 896 aa17.75■□□□□ 0.43
USP40-212ENST00000473191 ZACNQ401N2 412 aa17.75■□□□□ 0.43
USP40-212ENST00000473191 ZNF667Q5HYK9 610 aa17.75■□□□□ 0.43
USP40-212ENST00000473191 DGKKQ5KSL6 1271 aa17.75■□□□□ 0.43
USP40-212ENST00000473191 CC2D1AQ6P1N0 951 aaPredicted RBP17.75■□□□□ 0.43
USP40-212ENST00000473191 OSCP1Q8WVF1 389 aa17.75■□□□□ 0.43
USP40-212ENST00000473191 EEF2KMTQ96G04 330 aa17.75■□□□□ 0.43
USP40-212ENST00000473191 ECT2Q9H8V3 914 aa17.75■□□□□ 0.43
USP40-212ENST00000473191 DUS2Q9NX74 493 aaKnown RBP17.75■□□□□ 0.43
USP40-212ENST00000473191 TRAF3IP3Q9Y228 551 aa17.75■□□□□ 0.43
USP40-212ENST00000473191 ATG2BQ96BY7 2078 aa17.75■□□□□ 0.43
USP40-212ENST00000473191 A0A1W2PQ27 194 aa17.74■□□□□ 0.43
USP40-212ENST00000473191 A0A1W2PQ64 194 aa17.74■□□□□ 0.43
USP40-212ENST00000473191 A0A1W2PQD8 194 aa17.74■□□□□ 0.43
USP40-212ENST00000473191 TRDMT1O14717 391 aaKnown RBP17.74■□□□□ 0.43
USP40-212ENST00000473191 ABL1P00519 1130 aa17.74■□□□□ 0.43
USP40-212ENST00000473191 FAM163BP0C2L3 166 aa17.74■□□□□ 0.43
USP40-212ENST00000473191 CCDC130P13994 396 aa17.74■□□□□ 0.43
USP40-212ENST00000473191 TGM1P22735 817 aa17.74■□□□□ 0.43
USP40-212ENST00000473191 ID4P47928 161 aa17.74■□□□□ 0.43
USP40-212ENST00000473191 PGFP49763 221 aa17.74■□□□□ 0.43
USP40-212ENST00000473191 PPP3CAQ08209 521 aa17.74■□□□□ 0.43
USP40-212ENST00000473191 KCNB1Q14721 858 aa17.74■□□□□ 0.43
USP40-212ENST00000473191 C1orf228Q6PIY5 440 aa17.74■□□□□ 0.43
USP40-212ENST00000473191 ACOT1Q86TX2 421 aa17.74■□□□□ 0.43
USP40-212ENST00000473191 FAM35AQ86V20 835 aa17.74■□□□□ 0.43
USP40-212ENST00000473191 SCAMP5Q8TAC9 235 aa17.74■□□□□ 0.43
USP40-212ENST00000473191 ERCC4Q92889 916 aaPredicted RBP17.74■□□□□ 0.43
USP40-212ENST00000473191 TWNKQ96RR1 684 aa17.74■□□□□ 0.43
USP40-212ENST00000473191 IER2Q9BTL4 223 aa17.74■□□□□ 0.43
USP40-212ENST00000473191 APOBEC3GQ9HC16 384 aaKnown RBP17.74■□□□□ 0.43
USP40-212ENST00000473191 SMPD4Q9NXE4 827 aa17.74■□□□□ 0.43
USP40-212ENST00000473191 ARHGAP26Q9UNA1 814 aa17.74■□□□□ 0.43
USP40-212ENST00000473191 LEFTY2O00292 366 aa17.73■□□□□ 0.43
USP40-212ENST00000473191 HLA-DRAP01903 254 aa17.73■□□□□ 0.43
USP40-212ENST00000473191 MYL1P05976 194 aa17.73■□□□□ 0.43
USP40-212ENST00000473191 NR2F2P24468 414 aa17.73■□□□□ 0.43
USP40-212ENST00000473191 ASPAP45381 313 aa17.73■□□□□ 0.43
USP40-212ENST00000473191 GAB4Q2WGN9 574 aa17.73■□□□□ 0.43
USP40-212ENST00000473191 FUKQ8N0W3 1084 aa17.73■□□□□ 0.43
USP40-212ENST00000473191 C12orf29Q8N999 325 aa17.73■□□□□ 0.43
USP40-212ENST00000473191 ZMIZ2Q8NF64 920 aa17.73■□□□□ 0.43
USP40-212ENST00000473191 TMC2Q8TDI7 906 aa17.73■□□□□ 0.43
USP40-212ENST00000473191 FAM126AQ9BYI3 521 aaPredicted RBP17.73■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms