RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 AFPP02771 609 aaKnown RBP18.88■□□□□ 0.61
COL7A1-205ENST00000465238 GABRR2P28476 465 aa18.88■□□□□ 0.61
COL7A1-205ENST00000465238 TSPY1Q01534 308 aa18.88■□□□□ 0.61
COL7A1-205ENST00000465238 KCNH2Q12809 1159 aa18.88■□□□□ 0.61
COL7A1-205ENST00000465238 ANO6Q4KMQ2 910 aa18.88■□□□□ 0.61
COL7A1-205ENST00000465238 ARHGAP15Q53QZ3 475 aa18.88■□□□□ 0.61
COL7A1-205ENST00000465238 WDR44Q5JSH3 913 aa18.88■□□□□ 0.61
COL7A1-205ENST00000465238 LIMS2Q7Z4I7 341 aa18.88■□□□□ 0.61
COL7A1-205ENST00000465238 IRF2BP1Q8IU81 584 aa18.88■□□□□ 0.61
COL7A1-205ENST00000465238 ARID3BQ8IVW6 561 aaPredicted RBP18.88■□□□□ 0.61
COL7A1-205ENST00000465238 DCP1BQ8IZD4 617 aaKnown RBP18.88■□□□□ 0.61
COL7A1-205ENST00000465238 FAM200AQ8TCP9 573 aa18.88■□□□□ 0.61
COL7A1-205ENST00000465238 SPPL2BQ8TCT7 592 aa18.88■□□□□ 0.61
COL7A1-205ENST00000465238 CSGALNACT1Q8TDX6 532 aa18.88■□□□□ 0.61
COL7A1-205ENST00000465238 ELMO3Q96BJ8 720 aa18.88■□□□□ 0.61
COL7A1-205ENST00000465238 RSPRY1Q96DX4 576 aa18.88■□□□□ 0.61
COL7A1-205ENST00000465238 SEPT5Q99719 369 aaPredicted RBP18.88■□□□□ 0.61
COL7A1-205ENST00000465238 ACBD6Q9BR61 282 aa18.88■□□□□ 0.61
COL7A1-205ENST00000465238 SAMSN1Q9NSI8 373 aaKnown RBP18.88■□□□□ 0.61
COL7A1-205ENST00000465238 GABRDO14764 452 aa18.87■□□□□ 0.61
COL7A1-205ENST00000465238 P4HA2O15460 535 aa18.87■□□□□ 0.61
COL7A1-205ENST00000465238 WARSP23381 471 aaKnown RBP18.87■□□□□ 0.61
COL7A1-205ENST00000465238 PCSK1P29120 753 aa18.87■□□□□ 0.61
COL7A1-205ENST00000465238 GNL1P36915 607 aaPredicted RBP18.87■□□□□ 0.61
COL7A1-205ENST00000465238 NOP14P78316 857 aaKnown RBP18.87■□□□□ 0.61
COL7A1-205ENST00000465238 MYL5Q02045 173 aa18.87■□□□□ 0.61
COL7A1-205ENST00000465238 PPP2R5DQ14738 602 aa18.87■□□□□ 0.61
COL7A1-205ENST00000465238 MGAT5BQ3V5L5 792 aa18.87■□□□□ 0.61
COL7A1-205ENST00000465238 HSP90AA4PQ58FG1 418 aa18.87■□□□□ 0.61
COL7A1-205ENST00000465238 STXBP5Q5T5C0 1151 aa18.87■□□□□ 0.61
COL7A1-205ENST00000465238 SPOPLQ6IQ16 392 aa18.87■□□□□ 0.61
COL7A1-205ENST00000465238 SCARA5Q6ZMJ2 495 aa18.87■□□□□ 0.61
COL7A1-205ENST00000465238 OSTM1Q86WC4 334 aa18.87■□□□□ 0.61
COL7A1-205ENST00000465238 KIAA2013Q8IYS2 634 aa18.87■□□□□ 0.61
COL7A1-205ENST00000465238 OR6B3Q8NGW1 331 aa18.87■□□□□ 0.61
COL7A1-205ENST00000465238 SEMA4DQ92854 862 aa18.87■□□□□ 0.61
COL7A1-205ENST00000465238 C8orf33Q9H7E9 229 aaPredicted RBP18.87■□□□□ 0.61
COL7A1-205ENST00000465238 LMAN1LQ9HAT1 526 aa18.87■□□□□ 0.61
COL7A1-205ENST00000465238 OBP2AQ9NY56 170 aa18.87■□□□□ 0.61
COL7A1-205ENST00000465238 COQ4Q9Y3A0 265 aa18.87■□□□□ 0.61
COL7A1-205ENST00000465238 KCNJ18B7U540 433 aa18.86■□□□□ 0.61
COL7A1-205ENST00000465238 DPYSL4O14531 572 aa18.86■□□□□ 0.61
COL7A1-205ENST00000465238 PMM2O15305 246 aa18.86■□□□□ 0.61
COL7A1-205ENST00000465238 LILRB5O75023 590 aa18.86■□□□□ 0.61
COL7A1-205ENST00000465238 ATF6P18850 670 aa18.86■□□□□ 0.61
COL7A1-205ENST00000465238 WEE1P30291 646 aa18.86■□□□□ 0.61
COL7A1-205ENST00000465238 CDC25CP30307 473 aa18.86■□□□□ 0.61
COL7A1-205ENST00000465238 KCNJ12Q14500 433 aa18.86■□□□□ 0.61
COL7A1-205ENST00000465238 TAF12Q16514 161 aa18.86■□□□□ 0.61
COL7A1-205ENST00000465238 ARHGAP29Q52LW3 1261 aa18.86■□□□□ 0.61
COL7A1-205ENST00000465238 GPR158Q5T848 1215 aa18.86■□□□□ 0.61
COL7A1-205ENST00000465238 TSSK4Q6SA08 328 aa18.86■□□□□ 0.61
COL7A1-205ENST00000465238 KBTBD7Q8WVZ9 684 aa18.86■□□□□ 0.61
COL7A1-205ENST00000465238 GCNAQ96QF7 691 aa18.86■□□□□ 0.61
COL7A1-205ENST00000465238 LPIN3Q9BQK8 851 aa18.86■□□□□ 0.61
COL7A1-205ENST00000465238 MRPL45Q9BRJ2 306 aaKnown RBP18.86■□□□□ 0.61
COL7A1-205ENST00000465238 NIF3L1Q9GZT8 377 aa18.86■□□□□ 0.61
COL7A1-205ENST00000465238 ZMYM5Q9UJ78 669 aa18.86■□□□□ 0.61
COL7A1-205ENST00000465238 A8MXQ7 604 aa18.85■□□□□ 0.61
COL7A1-205ENST00000465238 PDGFRBP09619 1106 aa18.85■□□□□ 0.61
COL7A1-205ENST00000465238 ACAT1P24752 427 aaKnown RBP18.85■□□□□ 0.61
COL7A1-205ENST00000465238 EEF1GP26641 437 aaKnown RBP18.85■□□□□ 0.61
COL7A1-205ENST00000465238 KPNA1P52294 538 aaPredicted RBP18.85■□□□□ 0.61
COL7A1-205ENST00000465238 NRLP54845 237 aa18.85■□□□□ 0.61
COL7A1-205ENST00000465238 CDH8P55286 799 aa18.85■□□□□ 0.61
COL7A1-205ENST00000465238 ZSCAN23Q3MJ62 389 aa18.85■□□□□ 0.61
COL7A1-205ENST00000465238 LRRTM3Q86VH5 581 aa18.85■□□□□ 0.61
COL7A1-205ENST00000465238 DCLK2Q8N568 766 aa18.85■□□□□ 0.61
COL7A1-205ENST00000465238 EPC1Q9H2F5 836 aa18.85■□□□□ 0.61
COL7A1-205ENST00000465238 TASP1Q9H6P5 420 aa18.85■□□□□ 0.61
COL7A1-205ENST00000465238 SMYD3Q9H7B4 428 aa18.85■□□□□ 0.61
COL7A1-205ENST00000465238 APOBEC3GQ9HC16 384 aaKnown RBP18.85■□□□□ 0.61
COL7A1-205ENST00000465238 FANCLQ9NW38 375 aa18.85■□□□□ 0.61
COL7A1-205ENST00000465238 NCDNQ9UBB6 729 aa18.85■□□□□ 0.61
COL7A1-205ENST00000465238 CDH9Q9ULB4 789 aa18.85■□□□□ 0.61
COL7A1-205ENST00000465238 HAPLN1P10915 354 aaPredicted RBP18.84■□□□□ 0.61
COL7A1-205ENST00000465238 CHRNB1P11230 501 aa18.84■□□□□ 0.61
COL7A1-205ENST00000465238 PRKCSHP14314 528 aaPredicted RBP18.84■□□□□ 0.61
COL7A1-205ENST00000465238 LMO2P25791 158 aa18.84■□□□□ 0.61
COL7A1-205ENST00000465238 ASPAP45381 313 aa18.84■□□□□ 0.61
COL7A1-205ENST00000465238 RAP1GAPP47736 663 aa18.84■□□□□ 0.61
COL7A1-205ENST00000465238 CCR3P51677 355 aa18.84■□□□□ 0.61
COL7A1-205ENST00000465238 LRRC32Q14392 662 aa18.84■□□□□ 0.61
COL7A1-205ENST00000465238 MAN2A1Q16706 1144 aa18.84■□□□□ 0.61
COL7A1-205ENST00000465238 INTS6LQ5JSJ4 861 aaKnown RBP18.84■□□□□ 0.61
COL7A1-205ENST00000465238 GPIHBP1Q8IV16 184 aa18.84■□□□□ 0.61
COL7A1-205ENST00000465238 FAXDC2Q96IV6 333 aa18.84■□□□□ 0.61
COL7A1-205ENST00000465238 BPIFA3Q9BQP9 254 aa18.84■□□□□ 0.61
COL7A1-205ENST00000465238 SYT15Q9BQS2 421 aa18.84■□□□□ 0.61
COL7A1-205ENST00000465238 TUBGCP2Q9BSJ2 902 aa18.84■□□□□ 0.61
COL7A1-205ENST00000465238 FUCA2Q9BTY2 467 aa18.84■□□□□ 0.61
COL7A1-205ENST00000465238 CYP3A43Q9HB55 503 aa18.84■□□□□ 0.61
COL7A1-205ENST00000465238 IL21Q9HBE4 155 aa18.84■□□□□ 0.61
COL7A1-205ENST00000465238 ABI2Q9NYB9 513 aaPredicted RBP18.84■□□□□ 0.61
COL7A1-205ENST00000465238 PCDHB5Q9Y5E4 795 aa18.84■□□□□ 0.61
COL7A1-205ENST00000465238 DENND4CQ5VZ89 1909 aa18.84■□□□□ 0.61
COL7A1-205ENST00000465238 MYBPHLA2RUH7 354 aa18.83■□□□□ 0.6
COL7A1-205ENST00000465238 SLC38A8A6NNN8 435 aa18.83■□□□□ 0.6
COL7A1-205ENST00000465238 SMTNL1A8MU46 457 aa18.83■□□□□ 0.6
COL7A1-205ENST00000465238 HCRTO43612 131 aa18.83■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms