RNA–Protein interactions for RNA: ENST00000439475.1

MCF2L-216, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 5

Gene MCF2L, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-216ENST00000439475 FMO5P49326 533 aa11.11□□□□□ -0.63
MCF2L-216ENST00000439475 VCPP55072 806 aaKnown RBP11.11□□□□□ -0.63
MCF2L-216ENST00000439475 MLLT6P55198 1093 aaPredicted RBP11.11□□□□□ -0.63
MCF2L-216ENST00000439475 AMPD2Q01433 879 aa11.11□□□□□ -0.63
MCF2L-216ENST00000439475 INCA1Q0VD86 236 aa11.11□□□□□ -0.63
MCF2L-216ENST00000439475 CCDC142Q17RM4 750 aa11.11□□□□□ -0.63
MCF2L-216ENST00000439475 STXBP5Q5T5C0 1151 aa11.11□□□□□ -0.63
MCF2L-216ENST00000439475 TXNDC8Q6A555 127 aa11.11□□□□□ -0.63
MCF2L-216ENST00000439475 TPRG1Q6ZUI0 275 aa11.11□□□□□ -0.63
MCF2L-216ENST00000439475 FAM35AQ86V20 835 aa11.11□□□□□ -0.63
MCF2L-216ENST00000439475 CREBRFQ8IUR6 639 aa11.11□□□□□ -0.63
MCF2L-216ENST00000439475 TMEM105Q8N8V8 129 aa11.11□□□□□ -0.63
MCF2L-216ENST00000439475 STKLD1Q8NE28 680 aa11.11□□□□□ -0.63
MCF2L-216ENST00000439475 PDZD8Q8NEN9 1154 aa11.11□□□□□ -0.63
MCF2L-216ENST00000439475 ELMO3Q96BJ8 720 aa11.11□□□□□ -0.63
MCF2L-216ENST00000439475 HEXIM2Q96MH2 286 aaKnown RBP11.11□□□□□ -0.63
MCF2L-216ENST00000439475 DUSP9Q99956 384 aaKnown RBP11.11□□□□□ -0.63
MCF2L-216ENST00000439475 TTLL2Q9BWV7 592 aa11.11□□□□□ -0.63
MCF2L-216ENST00000439475 ZNF518BQ9C0D4 1074 aa11.11□□□□□ -0.63
MCF2L-216ENST00000439475 CLSTN2Q9H4D0 955 aa11.11□□□□□ -0.63
MCF2L-216ENST00000439475 C8orf33Q9H7E9 229 aaPredicted RBP11.11□□□□□ -0.63
MCF2L-216ENST00000439475 APOBEC3GQ9HC16 384 aaKnown RBP11.11□□□□□ -0.63
MCF2L-216ENST00000439475 TRPC7Q9HCX4 862 aa11.11□□□□□ -0.63
MCF2L-216ENST00000439475 RAPGEFL1Q9UHV5 662 aa11.11□□□□□ -0.63
MCF2L-216ENST00000439475 RWDD2AQ9UIY3 292 aa11.11□□□□□ -0.63
MCF2L-216ENST00000439475 DENND4CQ5VZ89 1909 aa11.1□□□□□ -0.63
MCF2L-216ENST00000439475 PMM2O15305 246 aa11.1□□□□□ -0.63
MCF2L-216ENST00000439475 GALR2O43603 387 aaPredicted RBP11.1□□□□□ -0.63
MCF2L-216ENST00000439475 CILPO75339 1184 aa11.1□□□□□ -0.63
MCF2L-216ENST00000439475 CKMP06732 381 aa11.1□□□□□ -0.63
MCF2L-216ENST00000439475 FAM200BP0CF97 657 aa11.1□□□□□ -0.63
MCF2L-216ENST00000439475 MAGEA9P43362 315 aa11.1□□□□□ -0.63
MCF2L-216ENST00000439475 KPNA1P52294 538 aaPredicted RBP11.1□□□□□ -0.63
MCF2L-216ENST00000439475 SLC8A3P57103 927 aa11.1□□□□□ -0.63
MCF2L-216ENST00000439475 FCHO2Q0JRZ9 810 aa11.1□□□□□ -0.63
MCF2L-216ENST00000439475 IFRD2Q12894 506 aaPredicted RBP11.1□□□□□ -0.63
MCF2L-216ENST00000439475 TAF10Q12962 218 aa11.1□□□□□ -0.63
MCF2L-216ENST00000439475 ZNF268Q14587 947 aaPredicted RBP11.1□□□□□ -0.63
MCF2L-216ENST00000439475 UBXN2BQ14CS0 331 aa11.1□□□□□ -0.63
MCF2L-216ENST00000439475 CBWD6Q4V339 395 aa11.1□□□□□ -0.63
MCF2L-216ENST00000439475 CBWD3Q5JTY5 395 aa11.1□□□□□ -0.63
MCF2L-216ENST00000439475 CBWD5Q5RIA9 395 aa11.1□□□□□ -0.63
MCF2L-216ENST00000439475 CWF19L1Q69YN2 538 aaKnown RBP11.1□□□□□ -0.63
MCF2L-216ENST00000439475 TMEM150AQ86TG1 271 aa11.1□□□□□ -0.63
MCF2L-216ENST00000439475 GPIHBP1Q8IV16 184 aa11.1□□□□□ -0.63
MCF2L-216ENST00000439475 FUKQ8N0W3 1084 aa11.1□□□□□ -0.63
MCF2L-216ENST00000439475 SLC2A14Q8TDB8 520 aa11.1□□□□□ -0.63
MCF2L-216ENST00000439475 OVCA2Q8WZ82 227 aa11.1□□□□□ -0.63
MCF2L-216ENST00000439475 SEMA4DQ92854 862 aa11.1□□□□□ -0.63
MCF2L-216ENST00000439475 TATDN2Q93075 761 aa11.1□□□□□ -0.63
MCF2L-216ENST00000439475 SLC35C1Q96A29 364 aa11.1□□□□□ -0.63
MCF2L-216ENST00000439475 EXOC4Q96A65 974 aa11.1□□□□□ -0.63
MCF2L-216ENST00000439475 TMEM176AQ96HP8 235 aa11.1□□□□□ -0.63
MCF2L-216ENST00000439475 NT5C1BQ96P26 610 aa11.1□□□□□ -0.63
MCF2L-216ENST00000439475 HNRNPABQ99729 332 aaKnown RBP11.1□□□□□ -0.63
MCF2L-216ENST00000439475 FBXO44Q9H4M3 255 aa11.1□□□□□ -0.63
MCF2L-216ENST00000439475 HEBP1Q9NRV9 189 aa11.1□□□□□ -0.63
MCF2L-216ENST00000439475 CISHQ9NSE2 258 aa11.1□□□□□ -0.63
MCF2L-216ENST00000439475 LMBRD1Q9NUN5 540 aa11.1□□□□□ -0.63
MCF2L-216ENST00000439475 UTP18Q9Y5J1 556 aaKnown RBP eCLIP11.1□□□□□ -0.63
MCF2L-216ENST00000439475 PTPRDP23468 1912 aa11.09□□□□□ -0.63
MCF2L-216ENST00000439475 NUP210Q8TEM1 1887 aaPredicted RBP11.09□□□□□ -0.63
MCF2L-216ENST00000439475 FAM170BA6NMN3 283 aa11.09□□□□□ -0.63
MCF2L-216ENST00000439475 NRG2O14511 850 aaPredicted RBP11.09□□□□□ -0.63
MCF2L-216ENST00000439475 PI15O43692 258 aa11.09□□□□□ -0.63
MCF2L-216ENST00000439475 AFPP02771 609 aaKnown RBP11.09□□□□□ -0.63
MCF2L-216ENST00000439475 ADORA2BP29275 332 aa11.09□□□□□ -0.63
MCF2L-216ENST00000439475 MARSP56192 900 aaKnown RBP11.09□□□□□ -0.63
MCF2L-216ENST00000439475 KCNH2Q12809 1159 aa11.09□□□□□ -0.63
MCF2L-216ENST00000439475 ZNF394Q53GI3 561 aa11.09□□□□□ -0.63
MCF2L-216ENST00000439475 CT47A1Q5JQC4 288 aaPredicted RBP11.09□□□□□ -0.63
MCF2L-216ENST00000439475 IER5LQ5T953 404 aa11.09□□□□□ -0.63
MCF2L-216ENST00000439475 PAQR9Q6ZVX9 377 aa11.09□□□□□ -0.63
MCF2L-216ENST00000439475 FAM114A1Q8IWE2 563 aa11.09□□□□□ -0.63
MCF2L-216ENST00000439475 C12orf29Q8N999 325 aa11.09□□□□□ -0.63
MCF2L-216ENST00000439475 DTWD2Q8NBA8 298 aa11.09□□□□□ -0.63
MCF2L-216ENST00000439475 PJA1Q8NG27 643 aa11.09□□□□□ -0.63
MCF2L-216ENST00000439475 FAM3CQ92520 227 aa11.09□□□□□ -0.63
MCF2L-216ENST00000439475 FBXO32Q969P5 355 aa11.09□□□□□ -0.63
MCF2L-216ENST00000439475 KCNK16Q96T55 309 aa11.09□□□□□ -0.63
MCF2L-216ENST00000439475 DDX23Q9BUQ8 820 aaKnown RBP11.09□□□□□ -0.63
MCF2L-216ENST00000439475 LTB4R2Q9NPC1 389 aa11.09□□□□□ -0.63
MCF2L-216ENST00000439475 GKN1Q9NS71 199 aa11.09□□□□□ -0.63
MCF2L-216ENST00000439475 KRT82Q9NSB4 513 aa11.09□□□□□ -0.63
MCF2L-216ENST00000439475 FAM49BQ9NUQ9 324 aa11.09□□□□□ -0.63
MCF2L-216ENST00000439475 KIAA1257Q9ULG3 409 aa11.09□□□□□ -0.63
MCF2L-216ENST00000439475 GREB1Q4ZG55 1949 aa11.09□□□□□ -0.63
MCF2L-216ENST00000439475 ZNF840PA6NDX5 716 aa11.08□□□□□ -0.64
MCF2L-216ENST00000439475 LRRN2O75325 713 aa11.08□□□□□ -0.64
MCF2L-216ENST00000439475 CCDC130P13994 396 aa11.08□□□□□ -0.64
MCF2L-216ENST00000439475 PRKCSHP14314 528 aaPredicted RBP11.08□□□□□ -0.64
MCF2L-216ENST00000439475 IFNAR2P48551 515 aa11.08□□□□□ -0.64
MCF2L-216ENST00000439475 MAP3K7CLP57077 242 aa11.08□□□□□ -0.64
MCF2L-216ENST00000439475 USP46P62068 366 aa11.08□□□□□ -0.64
MCF2L-216ENST00000439475 LRMPQ12912 555 aa11.08□□□□□ -0.64
MCF2L-216ENST00000439475 NR1H3Q13133 447 aa11.08□□□□□ -0.64
MCF2L-216ENST00000439475 ORC1Q13415 861 aa11.08□□□□□ -0.64
MCF2L-216ENST00000439475 CUL2Q13617 745 aa11.08□□□□□ -0.64
MCF2L-216ENST00000439475 PDGFRLQ15198 375 aa11.08□□□□□ -0.64
MCF2L-216ENST00000439475 RALGPS2Q86X27 583 aaPredicted RBP11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms