RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 CCDC157Q569K6 752 aa17.81■□□□□ 0.44
PTPRF-209ENST00000438120 ARHGAP18Q8N392 663 aa17.81■□□□□ 0.44
PTPRF-209ENST00000438120 TAS1R2Q8TE23 839 aa17.81■□□□□ 0.44
PTPRF-209ENST00000438120 RTFDC1Q9BY42 306 aaPredicted RBP17.81■□□□□ 0.44
PTPRF-209ENST00000438120 ASCC2Q9H1I8 757 aaPredicted RBP17.81■□□□□ 0.44
PTPRF-209ENST00000438120 OSGEPQ9NPF4 335 aa17.81■□□□□ 0.44
PTPRF-209ENST00000438120 MYL6P60660 151 aa17.81■□□□□ 0.44
PTPRF-209ENST00000438120 C9orf131Q5VYM1 1079 aa17.81■□□□□ 0.44
PTPRF-209ENST00000438120 ARMC6Q6NXE6 501 aa17.81■□□□□ 0.44
PTPRF-209ENST00000438120 MIER2Q8N344 545 aa17.81■□□□□ 0.44
PTPRF-209ENST00000438120 MMGT1Q8N4V1 131 aa17.81■□□□□ 0.44
PTPRF-209ENST00000438120 PXMP2Q9NR77 195 aa17.81■□□□□ 0.44
PTPRF-209ENST00000438120 IARS2Q9NSE4 1012 aaKnown RBP17.81■□□□□ 0.44
PTPRF-209ENST00000438120 RUVBL2Q9Y230 463 aaKnown RBP17.81■□□□□ 0.44
PTPRF-209ENST00000438120 FAM205AQ6ZU69 1335 aa17.81■□□□□ 0.44
PTPRF-209ENST00000438120 DNAJB2P25686 324 aa17.81■□□□□ 0.44
PTPRF-209ENST00000438120 LY6KQ17RY6 165 aa17.81■□□□□ 0.44
PTPRF-209ENST00000438120 FAM83EQ2M2I3 478 aa17.81■□□□□ 0.44
PTPRF-209ENST00000438120 PRUNE1Q86TP1 453 aa17.81■□□□□ 0.44
PTPRF-209ENST00000438120 LINC00523Q86TU6 105 aa17.81■□□□□ 0.44
PTPRF-209ENST00000438120 ADCK1Q86TW2 530 aa17.81■□□□□ 0.44
PTPRF-209ENST00000438120 JADE3Q92613 823 aa17.81■□□□□ 0.44
PTPRF-209ENST00000438120 OSMRQ99650 979 aa17.81■□□□□ 0.44
PTPRF-209ENST00000438120 CYP4F12Q9HCS2 524 aa17.81■□□□□ 0.44
PTPRF-209ENST00000438120 UBP1Q9NZI7 540 aa17.81■□□□□ 0.44
PTPRF-209ENST00000438120 CDY2AQ9Y6F7 541 aa17.81■□□□□ 0.44
PTPRF-209ENST00000438120 CDY1Q9Y6F8 540 aa17.81■□□□□ 0.44
PTPRF-209ENST00000438120 CAPN6Q9Y6Q1 641 aa17.81■□□□□ 0.44
PTPRF-209ENST00000438120 TARSP26639 723 aaKnown RBP17.81■□□□□ 0.44
PTPRF-209ENST00000438120 OTUD4Q01804 1114 aaKnown RBP17.81■□□□□ 0.44
PTPRF-209ENST00000438120 GALNTL6Q49A17 601 aa17.81■□□□□ 0.44
PTPRF-209ENST00000438120 UNKQ9C0B0 810 aaKnown RBP17.81■□□□□ 0.44
PTPRF-209ENST00000438120 ENTPD7Q9NQZ7 604 aa17.81■□□□□ 0.44
PTPRF-209ENST00000438120 RIC8BQ9NVN3 520 aa17.81■□□□□ 0.44
PTPRF-209ENST00000438120 MTSS1O43312 755 aa17.81■□□□□ 0.44
PTPRF-209ENST00000438120 SREBF1P36956 1147 aa17.81■□□□□ 0.44
PTPRF-209ENST00000438120 MAPRE1Q15691 268 aaKnown RBP17.81■□□□□ 0.44
PTPRF-209ENST00000438120 ZNF484Q5JVG2 852 aa17.81■□□□□ 0.44
PTPRF-209ENST00000438120 PPP1R2P1Q96PQ5 205 aa17.81■□□□□ 0.44
PTPRF-209ENST00000438120 TMEM121Q9BTD3 319 aa17.81■□□□□ 0.44
PTPRF-209ENST00000438120 RNF112Q9ULX5 631 aa17.81■□□□□ 0.44
PTPRF-209ENST00000438120 PSTPIP1O43586 416 aa17.8■□□□□ 0.44
PTPRF-209ENST00000438120 CKMP06732 381 aa17.8■□□□□ 0.44
PTPRF-209ENST00000438120 CTXN3Q4LDR2 81 aa17.8■□□□□ 0.44
PTPRF-209ENST00000438120 SLFN11Q7Z7L1 901 aa17.8■□□□□ 0.44
PTPRF-209ENST00000438120 ZDHHC15Q96MV8 337 aa17.8■□□□□ 0.44
PTPRF-209ENST00000438120 C2orf81A6NN90 581 aa17.8■□□□□ 0.44
PTPRF-209ENST00000438120 RRM1P23921 792 aa17.8■□□□□ 0.44
PTPRF-209ENST00000438120 SERPINB5P36952 375 aa17.8■□□□□ 0.44
PTPRF-209ENST00000438120 NUDT2P50583 147 aa17.8■□□□□ 0.44
PTPRF-209ENST00000438120 THAP11Q96EK4 314 aa17.8■□□□□ 0.44
PTPRF-209ENST00000438120 EXOSC4Q9NPD3 245 aaKnown RBP17.8■□□□□ 0.44
PTPRF-209ENST00000438120 SLC25A13Q9UJS0 675 aa17.8■□□□□ 0.44
PTPRF-209ENST00000438120 USP20Q9Y2K6 914 aa17.8■□□□□ 0.44
PTPRF-209ENST00000438120 EFCAB14O75071 495 aa17.8■□□□□ 0.44
PTPRF-209ENST00000438120 VDRP11473 427 aa17.8■□□□□ 0.44
PTPRF-209ENST00000438120 TRIM66O15016 1216 aa17.8■□□□□ 0.44
PTPRF-209ENST00000438120 RGL2O15211 777 aa17.8■□□□□ 0.44
PTPRF-209ENST00000438120 SOAT2O75908 522 aa17.8■□□□□ 0.44
PTPRF-209ENST00000438120 HPCAP84074 193 aa17.8■□□□□ 0.44
PTPRF-209ENST00000438120 NBPF20Q3BBV1 942 aa17.8■□□□□ 0.44
PTPRF-209ENST00000438120 DEPDC1Q5TB30 811 aa17.8■□□□□ 0.44
PTPRF-209ENST00000438120 FOXP3Q9BZS1 431 aa17.8■□□□□ 0.44
PTPRF-209ENST00000438120 DDX28Q9NUL7 540 aaKnown RBP17.8■□□□□ 0.44
PTPRF-209ENST00000438120 XPO1O14980 1071 aaKnown RBP17.8■□□□□ 0.44
PTPRF-209ENST00000438120 CXCL8P10145 99 aa17.8■□□□□ 0.44
PTPRF-209ENST00000438120 GEMP55040 296 aa17.8■□□□□ 0.44
PTPRF-209ENST00000438120 PSMC6P62333 389 aa17.8■□□□□ 0.44
PTPRF-209ENST00000438120 MAPK7Q13164 816 aa17.8■□□□□ 0.44
PTPRF-209ENST00000438120 POLD3Q15054 466 aaPredicted RBP17.8■□□□□ 0.44
PTPRF-209ENST00000438120 DEFB128Q7Z7B8 93 aa17.8■□□□□ 0.44
PTPRF-209ENST00000438120 PLD3Q8IV08 490 aa17.8■□□□□ 0.44
PTPRF-209ENST00000438120 TRIM48Q8IWZ4 208 aa17.8■□□□□ 0.44
PTPRF-209ENST00000438120 AKT1S1Q96B36 256 aa17.8■□□□□ 0.44
PTPRF-209ENST00000438120 VPS33BQ9H267 617 aa17.8■□□□□ 0.44
PTPRF-209ENST00000438120 ZNF711Q9Y462 761 aa17.8■□□□□ 0.44
PTPRF-209ENST00000438120 IGF2BP3O00425 579 aaKnown RBP eCLIP17.79■□□□□ 0.441e-6■■□□□ 14
PTPRF-209ENST00000438120 UBTFL6P0CB48 400 aaPredicted RBP17.79■□□□□ 0.44
PTPRF-209ENST00000438120 CYP2C8P10632 490 aa17.79■□□□□ 0.44
PTPRF-209ENST00000438120 FDFT1P37268 417 aa17.79■□□□□ 0.44
PTPRF-209ENST00000438120 RAP1GDS1P52306 607 aa17.79■□□□□ 0.44
PTPRF-209ENST00000438120 MFSD4BQ5TF39 518 aa17.79■□□□□ 0.44
PTPRF-209ENST00000438120 DENND1BQ6P3S1 775 aa17.79■□□□□ 0.44
PTPRF-209ENST00000438120 SRLQ86TD4 932 aa17.79■□□□□ 0.44
PTPRF-209ENST00000438120 SLC44A2Q8IWA5 706 aaPredicted RBP17.79■□□□□ 0.44
PTPRF-209ENST00000438120 SETD4Q9NVD3 440 aa17.79■□□□□ 0.44
PTPRF-209ENST00000438120 GID8Q9NWU2 228 aa17.79■□□□□ 0.44
PTPRF-209ENST00000438120 H2AFY2Q9P0M6 372 aaPredicted RBP17.79■□□□□ 0.44
PTPRF-209ENST00000438120 PLAGL2Q9UPG8 496 aa17.79■□□□□ 0.44
PTPRF-209ENST00000438120 RASSF10A6NK89 507 aa17.79■□□□□ 0.44
PTPRF-209ENST00000438120 CDH2P19022 906 aaPredicted RBP17.79■□□□□ 0.44
PTPRF-209ENST00000438120 C11orf63Q6NUN7 778 aa17.79■□□□□ 0.44
PTPRF-209ENST00000438120 THUMPD3Q9BV44 507 aaKnown RBP17.79■□□□□ 0.44
PTPRF-209ENST00000438120 SCUBE2Q9NQ36 999 aa17.79■□□□□ 0.44
PTPRF-209ENST00000438120 REXO1L1PQ8IX06 675 aa17.79■□□□□ 0.44
PTPRF-209ENST00000438120 SEPT8Q92599 483 aa17.79■□□□□ 0.44
PTPRF-209ENST00000438120 PHF21AQ96BD5 680 aa17.79■□□□□ 0.44
PTPRF-209ENST00000438120 TUBGCP3Q96CW5 907 aa17.79■□□□□ 0.44
PTPRF-209ENST00000438120 VWA5AO00534 786 aa17.79■□□□□ 0.44
PTPRF-209ENST00000438120 GAS2O43903 313 aaKnown RBP17.79■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms