RNA–Protein interactions for RNA: ENST00000416400.1

VPS54-204, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS54, Length 1,277 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-204ENST00000416400 TAF2Q6P1X5 1199 aa5.46□□□□□ -1.54
VPS54-204ENST00000416400 CRIP3Q6Q6R5 217 aa5.46□□□□□ -1.54
VPS54-204ENST00000416400 GGNQ86UU5 652 aa5.46□□□□□ -1.54
VPS54-204ENST00000416400 LCORLQ8N3X6 602 aa5.46□□□□□ -1.54
VPS54-204ENST00000416400 NSUN7Q8NE18 718 aaKnown RBP5.46□□□□□ -1.54
VPS54-204ENST00000416400 ZNF384Q8TF68 577 aa5.46□□□□□ -1.54
VPS54-204ENST00000416400 GCC1Q96CN9 775 aa5.46□□□□□ -1.54
VPS54-204ENST00000416400 TMEM120AQ9BXJ8 343 aa5.46□□□□□ -1.54
VPS54-204ENST00000416400 MAGEH1Q9H213 219 aa5.46□□□□□ -1.54
VPS54-204ENST00000416400 TBCCD1Q9NVR7 557 aa5.46□□□□□ -1.54
VPS54-204ENST00000416400 NOL12Q9UGY1 213 aaKnown RBP eCLIP5.46□□□□□ -1.54
VPS54-204ENST00000416400 HS3ST3A1Q9Y663 406 aa5.46□□□□□ -1.54
VPS54-204ENST00000416400 TRGV11A0A075B6L2 103 aa5.45□□□□□ -1.54
VPS54-204ENST00000416400 MYADML2A6NDP7 307 aa5.45□□□□□ -1.54
VPS54-204ENST00000416400 TMEM200CA6NKL6 621 aa5.45□□□□□ -1.54
VPS54-204ENST00000416400 PIP5K1BO14986 540 aa5.45□□□□□ -1.54
VPS54-204ENST00000416400 KCNQ3O43525 872 aa5.45□□□□□ -1.54
VPS54-204ENST00000416400 SOAT2O75908 522 aa5.45□□□□□ -1.54
VPS54-204ENST00000416400 HSD3B1P14060 373 aa5.45□□□□□ -1.54
VPS54-204ENST00000416400 VEGFAP15692 232 aaPredicted RBP5.45□□□□□ -1.54
VPS54-204ENST00000416400 EGR1P18146 543 aa5.45□□□□□ -1.54
VPS54-204ENST00000416400 ITGALP20701 1170 aa5.45□□□□□ -1.54
VPS54-204ENST00000416400 NR4A1P22736 598 aa5.45□□□□□ -1.54
VPS54-204ENST00000416400 LRPAP1P30533 357 aa5.45□□□□□ -1.54
VPS54-204ENST00000416400 SERPINF1P36955 418 aa5.45□□□□□ -1.54
VPS54-204ENST00000416400 GCLCP48506 637 aaPredicted RBP5.45□□□□□ -1.54
VPS54-204ENST00000416400 PTDSS1P48651 473 aaKnown RBP5.45□□□□□ -1.54
VPS54-204ENST00000416400 PXNP49023 591 aaPredicted RBP5.45□□□□□ -1.54
VPS54-204ENST00000416400 RPS7P62081 194 aaKnown RBP5.45□□□□□ -1.54
VPS54-204ENST00000416400 ZXDAP98168 799 aa5.45□□□□□ -1.54
VPS54-204ENST00000416400 FOXO1Q12778 655 aa5.45□□□□□ -1.54
VPS54-204ENST00000416400 FSTL1Q12841 308 aa5.45□□□□□ -1.54
VPS54-204ENST00000416400 PPFIA1Q13136 1202 aa5.45□□□□□ -1.54
VPS54-204ENST00000416400 PTK2BQ14289 1009 aa5.45□□□□□ -1.54
VPS54-204ENST00000416400 B3GNTL1Q67FW5 361 aaPredicted RBP5.45□□□□□ -1.54
VPS54-204ENST00000416400 FCRL6Q6DN72 434 aa5.45□□□□□ -1.54
VPS54-204ENST00000416400 CRTC1Q6UUV9 634 aa5.45□□□□□ -1.54
VPS54-204ENST00000416400 KRT73Q86Y46 540 aa5.45□□□□□ -1.54
VPS54-204ENST00000416400 POC1BQ8TC44 478 aa5.45□□□□□ -1.54
VPS54-204ENST00000416400 FAM83DQ9H4H8 585 aa5.45□□□□□ -1.54
VPS54-204ENST00000416400 CYP4F11Q9HBI6 524 aa5.45□□□□□ -1.54
VPS54-204ENST00000416400 CTTNBP2NLQ9P2B4 639 aa5.45□□□□□ -1.54
VPS54-204ENST00000416400 ANKFY1Q9P2R3 1169 aa5.45□□□□□ -1.54
VPS54-204ENST00000416400 HSFX1Q9UBD0 423 aa5.45□□□□□ -1.54
VPS54-204ENST00000416400 CAPN11Q9UMQ6 739 aa5.45□□□□□ -1.54
VPS54-204ENST00000416400 GPR52Q9Y2T5 361 aa5.45□□□□□ -1.54
VPS54-204ENST00000416400 CDY1Q9Y6F8 540 aa5.45□□□□□ -1.54
VPS54-204ENST00000416400 PRAMEF33A0A0G2JMD5 474 aa5.44□□□□□ -1.54
VPS54-204ENST00000416400 CENPVL1A0A0U1RR11 272 aa5.44□□□□□ -1.54
VPS54-204ENST00000416400 M0R3H8 397 aa5.44□□□□□ -1.54
VPS54-204ENST00000416400 NARSO43776 548 aaKnown RBP5.44□□□□□ -1.54
VPS54-204ENST00000416400 RRP9O43818 475 aaKnown RBP5.44□□□□□ -1.54
VPS54-204ENST00000416400 PRAMEF10O60809 474 aa5.44□□□□□ -1.54
VPS54-204ENST00000416400 WDHD1O75717 1129 aaPredicted RBP5.44□□□□□ -1.54
VPS54-204ENST00000416400 PIAS2O75928 621 aa5.44□□□□□ -1.54
VPS54-204ENST00000416400 ELANEP08246 267 aa5.44□□□□□ -1.54
VPS54-204ENST00000416400 ANXA11P50995 505 aaKnown RBP5.44□□□□□ -1.54
VPS54-204ENST00000416400 ZNF134P52741 427 aa5.44□□□□□ -1.54
VPS54-204ENST00000416400 ITGA8P53708 1063 aa5.44□□□□□ -1.54
VPS54-204ENST00000416400 KRTAP10-2P60368 255 aa5.44□□□□□ -1.54
VPS54-204ENST00000416400 BLOC1S1P78537 153 aa5.44□□□□□ -1.54
VPS54-204ENST00000416400 MAPKAPK3Q16644 382 aa5.44□□□□□ -1.54
VPS54-204ENST00000416400 FNDC7Q5VTL7 733 aa5.44□□□□□ -1.54
VPS54-204ENST00000416400 RFX8Q6ZV50 586 aa5.44□□□□□ -1.54
VPS54-204ENST00000416400 USP49Q70CQ1 688 aa5.44□□□□□ -1.54
VPS54-204ENST00000416400 MRGPREQ86SM8 312 aa5.44□□□□□ -1.54
VPS54-204ENST00000416400 ZNF280BQ86YH2 543 aa5.44□□□□□ -1.54
VPS54-204ENST00000416400 GATAD2AQ86YP4 633 aa5.44□□□□□ -1.54
VPS54-204ENST00000416400 ARHGEF19Q8IW93 802 aa5.44□□□□□ -1.54
VPS54-204ENST00000416400 STYXQ8WUJ0 223 aa5.44□□□□□ -1.54
VPS54-204ENST00000416400 TMEM125Q96AQ2 219 aa5.44□□□□□ -1.54
VPS54-204ENST00000416400 TBC1D20Q96BZ9 403 aa5.44□□□□□ -1.54
VPS54-204ENST00000416400 PRPF18Q99633 342 aaKnown RBP5.44□□□□□ -1.54
VPS54-204ENST00000416400 PCDHAC1Q9H158 963 aa5.44□□□□□ -1.54
VPS54-204ENST00000416400 AS3MTQ9HBK9 375 aa5.44□□□□□ -1.54
VPS54-204ENST00000416400 TMEM8AQ9HCN3 771 aa5.44□□□□□ -1.54
VPS54-204ENST00000416400 CASS4Q9NQ75 786 aa5.44□□□□□ -1.54
VPS54-204ENST00000416400 IGSF9Q9P2J2 1179 aa5.44□□□□□ -1.54
VPS54-204ENST00000416400 DNMT3BQ9UBC3 853 aaKnown RBP5.44□□□□□ -1.54
VPS54-204ENST00000416400 A0A1W2PS29 197 aa5.43□□□□□ -1.54
VPS54-204ENST00000416400 TMEM191CA6NGB0 347 aa5.43□□□□□ -1.54
VPS54-204ENST00000416400 E7ENX8 843 aa5.43□□□□□ -1.54
VPS54-204ENST00000416400 IRAK2O43187 625 aa5.43□□□□□ -1.54
VPS54-204ENST00000416400 ASNA1O43681 348 aa5.43□□□□□ -1.54
VPS54-204ENST00000416400 LPXNO60711 386 aa5.43□□□□□ -1.54
VPS54-204ENST00000416400 SUN1O94901 812 aa5.43□□□□□ -1.54
VPS54-204ENST00000416400 SPDEFO95238 335 aa5.43□□□□□ -1.54
VPS54-204ENST00000416400 RASAL1O95294 804 aa5.43□□□□□ -1.54
VPS54-204ENST00000416400 TNFRSF6BO95407 300 aa5.43□□□□□ -1.54
VPS54-204ENST00000416400 ITGA5P08648 1049 aa5.43□□□□□ -1.54
VPS54-204ENST00000416400 DHRS4L1P0CG22 281 aa5.43□□□□□ -1.54
VPS54-204ENST00000416400 ITGAMP11215 1152 aa5.43□□□□□ -1.54
VPS54-204ENST00000416400 ATICP31939 592 aa5.43□□□□□ -1.54
VPS54-204ENST00000416400 AVPR1BP47901 424 aa5.43□□□□□ -1.54
VPS54-204ENST00000416400 VAV2P52735 878 aa5.43□□□□□ -1.54
VPS54-204ENST00000416400 TAP2Q03519 686 aa5.43□□□□□ -1.54
VPS54-204ENST00000416400 TP53BP2Q13625 1128 aa5.43□□□□□ -1.54
VPS54-204ENST00000416400 POSTNQ15063 836 aa5.43□□□□□ -1.54
VPS54-204ENST00000416400 RALBP1Q15311 655 aa5.43□□□□□ -1.54
VPS54-204ENST00000416400 NPY5RQ15761 445 aa5.43□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms