RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 GRTP1Q5TC63 336 aa6.32□□□□□ -1.4
SCN1A-203ENST00000409050 ZNF662Q6ZS27 426 aa6.32□□□□□ -1.4
SCN1A-203ENST00000409050 SZRD1Q7Z422 152 aa6.32□□□□□ -1.4
SCN1A-203ENST00000409050 TMA16Q96EY4 203 aaKnown RBP6.32□□□□□ -1.4
SCN1A-203ENST00000409050 SLITRK1Q96PX8 696 aa6.32□□□□□ -1.4
SCN1A-203ENST00000409050 PACSIN1Q9BY11 444 aa6.32□□□□□ -1.4
SCN1A-203ENST00000409050 UBXN6Q9BZV1 441 aa6.32□□□□□ -1.4
SCN1A-203ENST00000409050 AVENQ9NQS1 362 aaPredicted RBP6.32□□□□□ -1.4
SCN1A-203ENST00000409050 AAASQ9NRG9 546 aa6.32□□□□□ -1.4
SCN1A-203ENST00000409050 RAB21Q9UL25 225 aa6.32□□□□□ -1.4
SCN1A-203ENST00000409050 PHTF1Q9UMS5 762 aa6.32□□□□□ -1.4
SCN1A-203ENST00000409050 FHOD1Q9Y613 1164 aa6.32□□□□□ -1.4
SCN1A-203ENST00000409050 A0A087WXM4 84 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 NKRFO15226 690 aaKnown RBP eCLIP6.31□□□□□ -1.4
SCN1A-203ENST00000409050 ATP9BO43861 1147 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 CLPTM1O96005 669 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 HLA-DRAP01903 254 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 TPBGLP0DKB5 382 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 CPB1P15086 417 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 CYP2C18P33260 490 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 HSD17B3P37058 310 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 RPL3P39023 403 aaKnown RBP6.31□□□□□ -1.4
SCN1A-203ENST00000409050 GRIK1P39086 918 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 SLC11A2P49281 568 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 HIRAP54198 1017 aaPredicted RBP6.31□□□□□ -1.4
SCN1A-203ENST00000409050 RAB25P57735 213 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 EMC2Q15006 297 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 LRRC14Q15048 493 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 C2CD6Q53TS8 623 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 NOTUMQ6P988 496 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 NIPA1Q7RTP0 329 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 IGDCC4Q8TDY8 1250 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 PDCD6IPQ8WUM4 868 aaKnown RBP6.31□□□□□ -1.4
SCN1A-203ENST00000409050 UCMAQ8WVF2 138 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 AIFM3Q96NN9 605 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 KLHL31Q9H511 634 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 HMG20AQ9NP66 347 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 RBM12Q9NTZ6 932 aaKnown RBP6.31□□□□□ -1.4
SCN1A-203ENST00000409050 RGL1Q9NZL6 768 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 LMTK2Q8IWU2 1503 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 PALM2-AKAP2B1ALY0 433 aaPredicted RBP6.31□□□□□ -1.4
SCN1A-203ENST00000409050 FAM47E-STBD1D6RA91 191 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 ZW10O43264 779 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 FASP25445 335 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 CAPZA2P47755 286 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 HARS2P49590 506 aaKnown RBP6.31□□□□□ -1.4
SCN1A-203ENST00000409050 DGUOKQ16854 277 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 FAM98BQ52LJ0 330 aaKnown RBP6.31□□□□□ -1.4
SCN1A-203ENST00000409050 TFDP3Q5H9I0 405 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 DENND1BQ6P3S1 775 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 LRRC49Q8IUZ0 686 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 CCDC60Q8IWA6 550 aaPredicted RBP6.31□□□□□ -1.4
SCN1A-203ENST00000409050 CENPLQ8N0S6 344 aaPredicted RBP6.31□□□□□ -1.4
SCN1A-203ENST00000409050 C1orf131Q8NDD1 294 aaKnown RBP6.31□□□□□ -1.4
SCN1A-203ENST00000409050 ACTRT2Q8TDY3 377 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 SPON2Q9BUD6 331 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 FAM49AQ9H0Q0 323 aaPredicted RBP6.31□□□□□ -1.4
SCN1A-203ENST00000409050 PCMTD2Q9NV79 361 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 AGAP1Q9UPQ3 857 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 MFHAS1Q9Y4C4 1052 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 SLC4A7Q9Y6M7 1214 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 ESYT3A0FGR9 886 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 DFFAO00273 331 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 WWP2O00308 870 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 SORBS3O60504 671 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 AP1G2O75843 785 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 KRT6AP02538 564 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 KRT6BP04259 564 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 CSF1RP07333 972 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 ODC1P11926 461 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 VCAM1P19320 739 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 PPP2R1BP30154 601 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 NAMPTP43490 491 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 KRT6CP48668 564 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 SESN2P58004 480 aaPredicted RBP6.31□□□□□ -1.4
SCN1A-203ENST00000409050 SLC20A2Q08357 652 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 MGAT5Q09328 741 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 CHI3L2Q15782 390 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 WDR72Q3MJ13 1102 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 KYAT3Q6YP21 454 aaKnown RBP6.31□□□□□ -1.4
SCN1A-203ENST00000409050 OXER1Q8TDS5 423 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 PIGBQ92521 554 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 SARS2Q9NP81 518 aaKnown RBP6.31□□□□□ -1.4
SCN1A-203ENST00000409050 ERAP1Q9NZ08 941 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 USE1Q9NZ43 259 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 DLGAP2Q9P1A6 1054 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 CDC42BPBQ9Y5S2 1711 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 ADGRA2Q96PE1 1338 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 IRGMA1A4Y4 181 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 LIN7AO14910 233 aaPredicted RBP6.31□□□□□ -1.4
SCN1A-203ENST00000409050 RHOBTB1O94844 696 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 CYP1A1P04798 512 aaPredicted RBP6.31□□□□□ -1.4
SCN1A-203ENST00000409050 SERPINE1P05121 402 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 FAM200BP0CF97 657 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 STAG3L1P0CL83 205 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 PABPC1P11940 636 aaKnown RBP6.31□□□□□ -1.4
SCN1A-203ENST00000409050 ITGALP20701 1170 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 PIK3R1P27986 724 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 ADORA2BP29275 332 aa6.31□□□□□ -1.4
SCN1A-203ENST00000409050 LTKP29376 864 aa6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms