RNA–Protein interactions for RNA: ENST00000407422.7

SMARCB1-204, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SMARCB1, Length 1,643 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-204ENST00000407422 TMC2Q8TDI7 906 aa20.55■□□□□ 0.88
SMARCB1-204ENST00000407422 CHFRQ96EP1 664 aa20.55■□□□□ 0.88
SMARCB1-204ENST00000407422 DNAH14Q0VDD8 3507 aa20.55■□□□□ 0.88
SMARCB1-204ENST00000407422 TRAV19A0A0A6YYK7 116 aa20.54■□□□□ 0.88
SMARCB1-204ENST00000407422 TRIM66O15016 1216 aa20.54■□□□□ 0.88
SMARCB1-204ENST00000407422 KINO60870 393 aaKnown RBP20.54■□□□□ 0.88
SMARCB1-204ENST00000407422 AKAP3O75969 853 aa20.54■□□□□ 0.88
SMARCB1-204ENST00000407422 USP17L7P0C7H9 530 aa20.54■□□□□ 0.88
SMARCB1-204ENST00000407422 TDGF1P13385 188 aa20.54■□□□□ 0.88
SMARCB1-204ENST00000407422 ARSAP15289 507 aa20.54■□□□□ 0.88
SMARCB1-204ENST00000407422 NR2F2P24468 414 aa20.54■□□□□ 0.88
SMARCB1-204ENST00000407422 FAM160A1Q05DH4 1040 aa20.54■□□□□ 0.88
SMARCB1-204ENST00000407422 RUNX3Q13761 415 aa20.54■□□□□ 0.88
SMARCB1-204ENST00000407422 KCNB1Q14721 858 aa20.54■□□□□ 0.88
SMARCB1-204ENST00000407422 MAMSTRQ6ZN01 415 aa20.54■□□□□ 0.88
SMARCB1-204ENST00000407422 SV2AQ7L0J3 742 aa20.54■□□□□ 0.88
SMARCB1-204ENST00000407422 SUMF1Q8NBK3 374 aa20.54■□□□□ 0.88
SMARCB1-204ENST00000407422 ATRIPQ8WXE1 791 aa20.54■□□□□ 0.88
SMARCB1-204ENST00000407422 C8orf48Q96LL4 319 aa20.54■□□□□ 0.88
SMARCB1-204ENST00000407422 ZSCAN32Q9NX65 697 aa20.54■□□□□ 0.88
SMARCB1-204ENST00000407422 PCDHGA2Q9Y5H1 932 aa20.54■□□□□ 0.88
SMARCB1-204ENST00000407422 MYH10P35580 1976 aa20.54■□□□□ 0.88
SMARCB1-204ENST00000407422 KIF20AO95235 890 aa20.53■□□□□ 0.88
SMARCB1-204ENST00000407422 SATB1Q01826 763 aa20.53■□□□□ 0.88
SMARCB1-204ENST00000407422 LRRC32Q14392 662 aa20.53■□□□□ 0.88
SMARCB1-204ENST00000407422 BECN1Q14457 450 aa20.53■□□□□ 0.88
SMARCB1-204ENST00000407422 SPOPLQ6IQ16 392 aa20.53■□□□□ 0.88
SMARCB1-204ENST00000407422 CC2D1AQ6P1N0 951 aaPredicted RBP20.53■□□□□ 0.88
SMARCB1-204ENST00000407422 SMYD4Q8IYR2 804 aaPredicted RBP20.53■□□□□ 0.88
SMARCB1-204ENST00000407422 GUF1Q8N442 669 aaKnown RBP20.53■□□□□ 0.88
SMARCB1-204ENST00000407422 CEP295NLQ96MC4 621 aa20.53■□□□□ 0.88
SMARCB1-204ENST00000407422 IER2Q9BTL4 223 aa20.53■□□□□ 0.88
SMARCB1-204ENST00000407422 TTLL2Q9BWV7 592 aa20.53■□□□□ 0.88
SMARCB1-204ENST00000407422 ELOVL4Q9GZR5 314 aa20.53■□□□□ 0.88
SMARCB1-204ENST00000407422 UTP3Q9NQZ2 479 aaKnown RBP eCLIP20.53■□□□□ 0.882e-9■■■■■ 167.7
SMARCB1-204ENST00000407422 IKBKBO14920 756 aa20.53■□□□□ 0.88
SMARCB1-204ENST00000407422 TRIM49P0CI25 452 aa20.53■□□□□ 0.88
SMARCB1-204ENST00000407422 TRIM49CP0CI26 452 aa20.53■□□□□ 0.88
SMARCB1-204ENST00000407422 HDCP19113 662 aa20.53■□□□□ 0.88
SMARCB1-204ENST00000407422 NOP14P78316 857 aaKnown RBP20.53■□□□□ 0.88
SMARCB1-204ENST00000407422 PNOCQ13519 176 aa20.53■□□□□ 0.88
SMARCB1-204ENST00000407422 CCINQ13939 588 aa20.53■□□□□ 0.88
SMARCB1-204ENST00000407422 MTF1Q14872 753 aa20.53■□□□□ 0.88
SMARCB1-204ENST00000407422 ZNF77Q15935 545 aa20.53■□□□□ 0.88
SMARCB1-204ENST00000407422 SGSM1Q2NKQ1 1148 aa20.53■□□□□ 0.88
SMARCB1-204ENST00000407422 C2orf42Q9NWW7 574 aa20.53■□□□□ 0.88
SMARCB1-204ENST00000407422 CXCL12P48061 93 aa20.52■□□□□ 0.88
SMARCB1-204ENST00000407422 CCR3P51677 355 aa20.52■□□□□ 0.88
SMARCB1-204ENST00000407422 VAMP7P51809 220 aa20.52■□□□□ 0.88
SMARCB1-204ENST00000407422 ZXDBP98169 803 aa20.52■□□□□ 0.88
SMARCB1-204ENST00000407422 ORC1Q13415 861 aa20.52■□□□□ 0.88
SMARCB1-204ENST00000407422 NFIL3Q16649 462 aa20.52■□□□□ 0.88
SMARCB1-204ENST00000407422 PAQR9Q6ZVX9 377 aa20.52■□□□□ 0.88
SMARCB1-204ENST00000407422 FMR1NBQ8N0W7 255 aaPredicted RBP20.52■□□□□ 0.88
SMARCB1-204ENST00000407422 SPEM1Q8N4L4 309 aa20.52■□□□□ 0.88
SMARCB1-204ENST00000407422 KCNK16Q96T55 309 aa20.52■□□□□ 0.88
SMARCB1-204ENST00000407422 TRPM5Q9NZQ8 1165 aa20.52■□□□□ 0.88
SMARCB1-204ENST00000407422 WNT6Q9Y6F9 365 aa20.52■□□□□ 0.88
SMARCB1-204ENST00000407422 ZNF840PA6NDX5 716 aa20.51■□□□□ 0.87
SMARCB1-204ENST00000407422 MAPK13O15264 365 aa20.51■□□□□ 0.87
SMARCB1-204ENST00000407422 LILRB5O75023 590 aa20.51■□□□□ 0.87
SMARCB1-204ENST00000407422 ASS1P00966 412 aaKnown RBP20.51■□□□□ 0.87
SMARCB1-204ENST00000407422 HLA-DRAP01903 254 aa20.51■□□□□ 0.87
SMARCB1-204ENST00000407422 PIK3CAP42336 1068 aa20.51■□□□□ 0.87
SMARCB1-204ENST00000407422 IFRD2Q12894 506 aaPredicted RBP20.51■□□□□ 0.87
SMARCB1-204ENST00000407422 TAF10Q12962 218 aa20.51■□□□□ 0.87
SMARCB1-204ENST00000407422 USP4Q13107 963 aa20.51■□□□□ 0.87
SMARCB1-204ENST00000407422 ZCWPW2Q504Y3 356 aa20.51■□□□□ 0.87
SMARCB1-204ENST00000407422 DGKKQ5KSL6 1271 aa20.51■□□□□ 0.87
SMARCB1-204ENST00000407422 ACOT1Q86TX2 421 aa20.51■□□□□ 0.87
SMARCB1-204ENST00000407422 DCLK2Q8N568 766 aa20.51■□□□□ 0.87
SMARCB1-204ENST00000407422 SH3RF2Q8TEC5 729 aa20.51■□□□□ 0.87
SMARCB1-204ENST00000407422 EEF2KMTQ96G04 330 aa20.51■□□□□ 0.87
SMARCB1-204ENST00000407422 DUS2Q9NX74 493 aaKnown RBP20.51■□□□□ 0.87
SMARCB1-204ENST00000407422 HMGXB4Q9UGU5 601 aa20.51■□□□□ 0.87
SMARCB1-204ENST00000407422 HOXC13P31276 330 aa20.5■□□□□ 0.87
SMARCB1-204ENST00000407422 ASPAP45381 313 aa20.5■□□□□ 0.87
SMARCB1-204ENST00000407422 GCLMP48507 274 aa20.5■□□□□ 0.87
SMARCB1-204ENST00000407422 PPP3CAQ08209 521 aa20.5■□□□□ 0.87
SMARCB1-204ENST00000407422 ADAM9Q13443 819 aa20.5■□□□□ 0.87
SMARCB1-204ENST00000407422 PDGFRLQ15198 375 aa20.5■□□□□ 0.87
SMARCB1-204ENST00000407422 NAIF1Q69YI7 327 aaPredicted RBP20.5■□□□□ 0.87
SMARCB1-204ENST00000407422 FAM35AQ86V20 835 aa20.5■□□□□ 0.87
SMARCB1-204ENST00000407422 FAM186BQ8IYM0 893 aa20.5■□□□□ 0.87
SMARCB1-204ENST00000407422 OSCP1Q8WVF1 389 aa20.5■□□□□ 0.87
SMARCB1-204ENST00000407422 RNF38Q9H0F5 515 aa20.5■□□□□ 0.87
SMARCB1-204ENST00000407422 FBRSL1Q9HCM7 1045 aaKnown RBP20.5■□□□□ 0.87
SMARCB1-204ENST00000407422 ARHGAP26Q9UNA1 814 aa20.5■□□□□ 0.87
SMARCB1-204ENST00000407422 ABL1P00519 1130 aa20.49■□□□□ 0.87
SMARCB1-204ENST00000407422 P4HA1P13674 534 aa20.49■□□□□ 0.87
SMARCB1-204ENST00000407422 NDST1P52848 882 aa20.49■□□□□ 0.87
SMARCB1-204ENST00000407422 TMEM196Q5HYL7 178 aa20.49■□□□□ 0.87
SMARCB1-204ENST00000407422 FSTL4Q6MZW2 842 aa20.49■□□□□ 0.87
SMARCB1-204ENST00000407422 INTS8Q75QN2 995 aaKnown RBP20.49■□□□□ 0.87
SMARCB1-204ENST00000407422 FUKQ8N0W3 1084 aa20.49■□□□□ 0.87
SMARCB1-204ENST00000407422 TAS1R2Q8TE23 839 aa20.49■□□□□ 0.87
SMARCB1-204ENST00000407422 TAF4BQ92750 862 aa20.49■□□□□ 0.87
SMARCB1-204ENST00000407422 TNIP3Q96KP6 325 aa20.49■□□□□ 0.87
SMARCB1-204ENST00000407422 HINFPQ9BQA5 517 aa20.49■□□□□ 0.87
SMARCB1-204ENST00000407422 MED10Q9BTT4 135 aa20.49■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms