RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 C1orf127Q8N9H9 656 aa9.5□□□□□ -0.89
LIG4-202ENST00000405925 ADAM32Q8TC27 787 aa9.5□□□□□ -0.89
LIG4-202ENST00000405925 TRIB2Q92519 343 aa9.5□□□□□ -0.89
LIG4-202ENST00000405925 TBRG4Q969Z0 631 aaKnown RBP eCLIP9.5□□□□□ -0.89
LIG4-202ENST00000405925 MS4A4AQ96JQ5 239 aa9.5□□□□□ -0.89
LIG4-202ENST00000405925 ELOVL4Q9GZR5 314 aa9.5□□□□□ -0.89
LIG4-202ENST00000405925 MINDY3Q9H8M7 445 aa9.5□□□□□ -0.89
LIG4-202ENST00000405925 INTS9Q9NV88 658 aaKnown RBP9.5□□□□□ -0.89
LIG4-202ENST00000405925 DMAC2Q9NW81 257 aa9.5□□□□□ -0.89
LIG4-202ENST00000405925 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.5□□□□□ -0.89
LIG4-202ENST00000405925 TELO2Q9Y4R8 837 aa9.5□□□□□ -0.89
LIG4-202ENST00000405925 A0A0U1RQJ8 604 aa9.5□□□□□ -0.89
LIG4-202ENST00000405925 SLC12A8A0AV02 714 aa9.5□□□□□ -0.89
LIG4-202ENST00000405925 ATP9BO43861 1147 aa9.5□□□□□ -0.89
LIG4-202ENST00000405925 F9P00740 461 aa9.5□□□□□ -0.89
LIG4-202ENST00000405925 YWHAZP63104 245 aaKnown RBP9.5□□□□□ -0.89
LIG4-202ENST00000405925 TUSC3Q13454 348 aa9.5□□□□□ -0.89
LIG4-202ENST00000405925 CNGA2Q16280 664 aa9.5□□□□□ -0.89
LIG4-202ENST00000405925 P3H1Q32P28 736 aa9.5□□□□□ -0.89
LIG4-202ENST00000405925 CST9Q5W186 159 aa9.5□□□□□ -0.89
LIG4-202ENST00000405925 CCDC62Q6P9F0 684 aa9.5□□□□□ -0.89
LIG4-202ENST00000405925 SLC24A5Q71RS6 500 aa9.5□□□□□ -0.89
LIG4-202ENST00000405925 DBF4BQ8NFT6 615 aa9.5□□□□□ -0.89
LIG4-202ENST00000405925 FBF1Q8TES7 1133 aa9.5□□□□□ -0.89
LIG4-202ENST00000405925 DEPDC1BQ8WUY9 529 aa9.5□□□□□ -0.89
LIG4-202ENST00000405925 VCPIP1Q96JH7 1222 aa9.5□□□□□ -0.89
LIG4-202ENST00000405925 CALCOCO1Q9P1Z2 691 aa9.5□□□□□ -0.89
LIG4-202ENST00000405925 PTCH2Q9Y6C5 1203 aa9.5□□□□□ -0.89
LIG4-202ENST00000405925 EIF3BP55884 814 aaKnown RBP9.5□□□□□ -0.89
LIG4-202ENST00000405925 FMO1Q01740 532 aa9.5□□□□□ -0.89
LIG4-202ENST00000405925 GRIK3Q13003 919 aa9.5□□□□□ -0.89
LIG4-202ENST00000405925 NNTQ13423 1086 aa9.5□□□□□ -0.89
LIG4-202ENST00000405925 ZNF268Q14587 947 aaPredicted RBP9.5□□□□□ -0.89
LIG4-202ENST00000405925 TAPT1Q6NXT6 567 aa9.5□□□□□ -0.89
LIG4-202ENST00000405925 B3GALNT2Q8NCR0 500 aa9.5□□□□□ -0.89
LIG4-202ENST00000405925 LNX1Q8TBB1 728 aaPredicted RBP9.5□□□□□ -0.89
LIG4-202ENST00000405925 CABS1Q96KC9 395 aa9.5□□□□□ -0.89
LIG4-202ENST00000405925 ULBP1Q9BZM6 244 aa9.5□□□□□ -0.89
LIG4-202ENST00000405925 NUDT5Q9UKK9 219 aa9.5□□□□□ -0.89
LIG4-202ENST00000405925 AP4E1Q9UPM8 1137 aa9.5□□□□□ -0.89
LIG4-202ENST00000405925 SHANK3Q9BYB0 1731 aa9.49□□□□□ -0.89
LIG4-202ENST00000405925 GNRH1P01148 92 aa9.49□□□□□ -0.89
LIG4-202ENST00000405925 PMS2P54278 862 aa9.49□□□□□ -0.89
LIG4-202ENST00000405925 HIF1AQ16665 826 aa9.49□□□□□ -0.89
LIG4-202ENST00000405925 ALS2CLQ60I27 953 aa9.49□□□□□ -0.89
LIG4-202ENST00000405925 IRF2BP2Q7Z5L9 587 aa9.49□□□□□ -0.89
LIG4-202ENST00000405925 SLFN11Q7Z7L1 901 aa9.49□□□□□ -0.89
LIG4-202ENST00000405925 PPM1NQ8N819 430 aa9.49□□□□□ -0.89
LIG4-202ENST00000405925 PPP4R1Q8TF05 950 aa9.49□□□□□ -0.89
LIG4-202ENST00000405925 ZNF558Q96NG5 402 aa9.49□□□□□ -0.89
LIG4-202ENST00000405925 PCYT2Q99447 389 aa9.49□□□□□ -0.89
LIG4-202ENST00000405925 PTPN18Q99952 460 aa9.49□□□□□ -0.89
LIG4-202ENST00000405925 CATSPERBQ9H7T0 1116 aa9.49□□□□□ -0.89
LIG4-202ENST00000405925 RNF186Q9NXI6 227 aa9.49□□□□□ -0.89
LIG4-202ENST00000405925 GTF2IRD1Q9UHL9 959 aa9.49□□□□□ -0.89
LIG4-202ENST00000405925 TLK1Q9UKI8 766 aa9.49□□□□□ -0.89
LIG4-202ENST00000405925 NR2E3Q9Y5X4 410 aa9.49□□□□□ -0.89
LIG4-202ENST00000405925 ZMYM2Q9UBW7 1377 aa9.49□□□□□ -0.89
LIG4-202ENST00000405925 SF3B1O75533 1304 aaKnown RBP eCLIP9.49□□□□□ -0.89
LIG4-202ENST00000405925 SLC2A3P11169 496 aa9.49□□□□□ -0.89
LIG4-202ENST00000405925 PURAQ00577 322 aaKnown RBP9.49□□□□□ -0.89
LIG4-202ENST00000405925 PDK1Q15118 436 aa9.49□□□□□ -0.89
LIG4-202ENST00000405925 SLC10A6Q3KNW5 377 aa9.49□□□□□ -0.89
LIG4-202ENST00000405925 TMEM63BQ5T3F8 832 aa9.49□□□□□ -0.89
LIG4-202ENST00000405925 C9orf57Q5W0N0 161 aa9.49□□□□□ -0.89
LIG4-202ENST00000405925 PIGZQ86VD9 579 aa9.49□□□□□ -0.89
LIG4-202ENST00000405925 YAF2Q8IY57 180 aa9.49□□□□□ -0.89
LIG4-202ENST00000405925 DEFB106AQ8N104 65 aa9.49□□□□□ -0.89
LIG4-202ENST00000405925 MICALL1Q8N3F8 863 aa9.49□□□□□ -0.89
LIG4-202ENST00000405925 ZNF296Q8WUU4 475 aaPredicted RBP9.49□□□□□ -0.89
LIG4-202ENST00000405925 C9orf72Q96LT7 481 aa9.49□□□□□ -0.89
LIG4-202ENST00000405925 HSD3B7Q9H2F3 369 aa9.49□□□□□ -0.89
LIG4-202ENST00000405925 A0A1B0GUA9 196 aa9.49□□□□□ -0.89
LIG4-202ENST00000405925 NEMP1O14524 444 aa9.49□□□□□ -0.89
LIG4-202ENST00000405925 CNMDO75829 334 aa9.49□□□□□ -0.89
LIG4-202ENST00000405925 C4BPAP04003 597 aaKnown RBP9.49□□□□□ -0.89
LIG4-202ENST00000405925 MBL2P11226 248 aaPredicted RBP9.49□□□□□ -0.89
LIG4-202ENST00000405925 CA4P22748 312 aa9.49□□□□□ -0.89
LIG4-202ENST00000405925 RPL9P32969 192 aaKnown RBP9.49□□□□□ -0.89
LIG4-202ENST00000405925 ZKSCAN8Q15776 578 aaPredicted RBP9.49□□□□□ -0.89
LIG4-202ENST00000405925 C17orf99Q6UX52 265 aa9.49□□□□□ -0.89
LIG4-202ENST00000405925 FAM71DQ8N9W8 422 aa9.49□□□□□ -0.89
LIG4-202ENST00000405925 C3orf20Q8ND61 904 aa9.49□□□□□ -0.89
LIG4-202ENST00000405925 OR6P1Q8NGX9 317 aa9.49□□□□□ -0.89
LIG4-202ENST00000405925 CRYGNQ8WXF5 182 aa9.49□□□□□ -0.89
LIG4-202ENST00000405925 RMDN1Q96DB5 314 aa9.49□□□□□ -0.89
LIG4-202ENST00000405925 CAPS2Q9BXY5 557 aa9.49□□□□□ -0.89
LIG4-202ENST00000405925 MUC3BQ9H195 1237 aa9.49□□□□□ -0.89
LIG4-202ENST00000405925 AVENQ9NQS1 362 aaPredicted RBP9.49□□□□□ -0.89
LIG4-202ENST00000405925 SMPD4Q9NXE4 827 aa9.49□□□□□ -0.89
LIG4-202ENST00000405925 CCDC78A2IDD5 438 aa9.48□□□□□ -0.89
LIG4-202ENST00000405925 CFAP69A5D8W1 941 aa9.48□□□□□ -0.89
LIG4-202ENST00000405925 USP17L7P0C7H9 530 aa9.48□□□□□ -0.89
LIG4-202ENST00000405925 ATP4AP20648 1035 aa9.48□□□□□ -0.89
LIG4-202ENST00000405925 KLRC2P26717 231 aa9.48□□□□□ -0.89
LIG4-202ENST00000405925 CARSP49589 748 aaKnown RBP9.48□□□□□ -0.89
LIG4-202ENST00000405925 EPHB3P54753 998 aa9.48□□□□□ -0.89
LIG4-202ENST00000405925 RAD51Q06609 339 aa9.48□□□□□ -0.89
LIG4-202ENST00000405925 TFDP3Q5H9I0 405 aa9.48□□□□□ -0.89
LIG4-202ENST00000405925 MEI1Q5TIA1 1274 aa9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms