RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 SPPL2BQ8TCT7 592 aa15□□□□□ -0.01
SKA1-202ENST00000398452 MICAL1Q8TDZ2 1067 aa15□□□□□ -0.01
SKA1-202ENST00000398452 C18orf8Q96DM3 657 aa15□□□□□ -0.01
SKA1-202ENST00000398452 FUBP3Q96I24 572 aaKnown RBP eCLIP15□□□□□ -0.01
SKA1-202ENST00000398452 RTP3Q9BQQ7 232 aa15□□□□□ -0.01
SKA1-202ENST00000398452 ZSWIM1Q9BR11 485 aa15□□□□□ -0.01
SKA1-202ENST00000398452 B3GNT5Q9BYG0 378 aa15□□□□□ -0.01
SKA1-202ENST00000398452 CERS4Q9HA82 394 aa15□□□□□ -0.01
SKA1-202ENST00000398452 DMAP1Q9NPF5 467 aaPredicted RBP15□□□□□ -0.01
SKA1-202ENST00000398452 ENTPD7Q9NQZ7 604 aa15□□□□□ -0.01
SKA1-202ENST00000398452 CHST7Q9NS84 486 aa15□□□□□ -0.01
SKA1-202ENST00000398452 KCND1Q9NSA2 647 aa15□□□□□ -0.01
SKA1-202ENST00000398452 ABI2Q9NYB9 513 aaPredicted RBP15□□□□□ -0.01
SKA1-202ENST00000398452 MYO1AQ9UBC5 1043 aa15□□□□□ -0.01
SKA1-202ENST00000398452 MTRRQ9UBK8 725 aa15□□□□□ -0.01
SKA1-202ENST00000398452 CNOT8Q9UFF9 292 aaKnown RBP15□□□□□ -0.01
SKA1-202ENST00000398452 LZTS1Q9Y250 596 aa15□□□□□ -0.01
SKA1-202ENST00000398452 CDY1Q9Y6F8 540 aa15□□□□□ -0.01
SKA1-202ENST00000398452 MACROD2A1Z1Q3 448 aa14.99□□□□□ -0.01
SKA1-202ENST00000398452 LCHNA4D1U4 455 aa14.99□□□□□ -0.01
SKA1-202ENST00000398452 KIF2AO00139 706 aaPredicted RBP14.99□□□□□ -0.01
SKA1-202ENST00000398452 CLDN5O00501 218 aa14.99□□□□□ -0.01
SKA1-202ENST00000398452 XPO1O14980 1071 aaKnown RBP14.99□□□□□ -0.01
SKA1-202ENST00000398452 PJA2O43164 708 aa14.99□□□□□ -0.01
SKA1-202ENST00000398452 TUBB4AP04350 444 aa14.99□□□□□ -0.01
SKA1-202ENST00000398452 CA3P07451 260 aa14.99□□□□□ -0.01
SKA1-202ENST00000398452 CFHP08603 1231 aa14.99□□□□□ -0.01
SKA1-202ENST00000398452 BDNFP23560 247 aa14.99□□□□□ -0.01
SKA1-202ENST00000398452 ELF1P32519 619 aa14.99□□□□□ -0.01
SKA1-202ENST00000398452 GRIK1P39086 918 aa14.99□□□□□ -0.01
SKA1-202ENST00000398452 GPD2P43304 727 aa14.99□□□□□ -0.01
SKA1-202ENST00000398452 PDCLQ13371 301 aa14.99□□□□□ -0.01
SKA1-202ENST00000398452 ADGRE1Q14246 886 aa14.99□□□□□ -0.01
SKA1-202ENST00000398452 PTPN14Q15678 1187 aa14.99□□□□□ -0.01
SKA1-202ENST00000398452 PPP2R2DQ66LE6 453 aa14.99□□□□□ -0.01
SKA1-202ENST00000398452 DNAJC24Q6P3W2 148 aa14.99□□□□□ -0.01
SKA1-202ENST00000398452 VSTM1Q6UX27 236 aa14.99□□□□□ -0.01
SKA1-202ENST00000398452 TAS1R1Q7RTX1 841 aa14.99□□□□□ -0.01
SKA1-202ENST00000398452 TTC30AQ86WT1 665 aa14.99□□□□□ -0.01
SKA1-202ENST00000398452 SCN4BQ8IWT1 228 aa14.99□□□□□ -0.01
SKA1-202ENST00000398452 FUKQ8N0W3 1084 aa14.99□□□□□ -0.01
SKA1-202ENST00000398452 SIX6OS1Q8N1H7 587 aa14.99□□□□□ -0.01
SKA1-202ENST00000398452 STK32AQ8WU08 396 aa14.99□□□□□ -0.01
SKA1-202ENST00000398452 RFFLQ8WZ73 363 aa14.99□□□□□ -0.01
SKA1-202ENST00000398452 HSFY1Q96LI6 401 aa14.99□□□□□ -0.01
SKA1-202ENST00000398452 LPIN3Q9BQK8 851 aa14.99□□□□□ -0.01
SKA1-202ENST00000398452 SELENOOQ9BVL4 669 aa14.99□□□□□ -0.01
SKA1-202ENST00000398452 EMILIN2Q9BXX0 1053 aa14.99□□□□□ -0.01
SKA1-202ENST00000398452 KRTAP3-3Q9BYR6 98 aa14.99□□□□□ -0.01
SKA1-202ENST00000398452 KRTAP3-2Q9BYR7 98 aa14.99□□□□□ -0.01
SKA1-202ENST00000398452 CYLDQ9NQC7 956 aa14.99□□□□□ -0.01
SKA1-202ENST00000398452 TAS2R14Q9NYV8 317 aa14.99□□□□□ -0.01
SKA1-202ENST00000398452 MTUS1Q9ULD2 1270 aa14.99□□□□□ -0.01
SKA1-202ENST00000398452 REXO2Q9Y3B8 237 aaKnown RBP14.99□□□□□ -0.01
SKA1-202ENST00000398452 UNC80Q8N2C7 3258 aa14.98□□□□□ -0.01
SKA1-202ENST00000398452 PRUNE2Q8WUY3 3088 aa14.98□□□□□ -0.01
SKA1-202ENST00000398452 A0A0A6YYK5 440 aaPredicted RBP14.98□□□□□ -0.01
SKA1-202ENST00000398452 FAM170AA1A519 330 aa14.98□□□□□ -0.01
SKA1-202ENST00000398452 RFXAPO00287 272 aa14.98□□□□□ -0.01
SKA1-202ENST00000398452 TRIM66O15016 1216 aa14.98□□□□□ -0.01
SKA1-202ENST00000398452 OR4Q2P0C623 313 aa14.98□□□□□ -0.01
SKA1-202ENST00000398452 MMP8P22894 467 aa14.98□□□□□ -0.01
SKA1-202ENST00000398452 OR1D2P34982 312 aa14.98□□□□□ -0.01
SKA1-202ENST00000398452 RGS7P49802 495 aa14.98□□□□□ -0.01
SKA1-202ENST00000398452 MAP3K7CLP57077 242 aa14.98□□□□□ -0.01
SKA1-202ENST00000398452 TAP1Q03518 808 aa14.98□□□□□ -0.01
SKA1-202ENST00000398452 GPR17Q13304 367 aa14.98□□□□□ -0.01
SKA1-202ENST00000398452 SMC1AQ14683 1233 aaKnown RBP14.98□□□□□ -0.01
SKA1-202ENST00000398452 DNTTIP2Q5QJE6 756 aaKnown RBP14.98□□□□□ -0.01
SKA1-202ENST00000398452 KIAA0319Q5VV43 1072 aa14.98□□□□□ -0.01
SKA1-202ENST00000398452 OR6B2Q6IFH4 312 aa14.98□□□□□ -0.01
SKA1-202ENST00000398452 DCUN1D2Q6PH85 259 aa14.98□□□□□ -0.01
SKA1-202ENST00000398452 ZDHHC17Q8IUH5 632 aa14.98□□□□□ -0.01
SKA1-202ENST00000398452 RNF168Q8IYW5 571 aaPredicted RBP14.98□□□□□ -0.01
SKA1-202ENST00000398452 RNF10Q8N5U6 811 aaKnown RBP14.98□□□□□ -0.01
SKA1-202ENST00000398452 TMEM209Q96SK2 561 aa14.98□□□□□ -0.01
SKA1-202ENST00000398452 PACSIN1Q9BY11 444 aa14.98□□□□□ -0.01
SKA1-202ENST00000398452 THAP2Q9H0W7 228 aa14.98□□□□□ -0.01
SKA1-202ENST00000398452 ABCB6Q9NP58 842 aa14.98□□□□□ -0.01
SKA1-202ENST00000398452 PARVAQ9NVD7 372 aa14.98□□□□□ -0.01
SKA1-202ENST00000398452 UVRAGQ9P2Y5 699 aa14.98□□□□□ -0.01
SKA1-202ENST00000398452 LCMT1Q9UIC8 334 aa14.98□□□□□ -0.01
SKA1-202ENST00000398452 NENFQ9UMX5 172 aa14.98□□□□□ -0.01
SKA1-202ENST00000398452 CDH23Q9H251 3354 aa14.98□□□□□ -0.01
SKA1-202ENST00000398452 COL4A6Q14031 1691 aa14.97□□□□□ -0.01
SKA1-202ENST00000398452 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP14.97□□□□□ -0.01
SKA1-202ENST00000398452 BTNL10A8MVZ5 291 aa14.97□□□□□ -0.01
SKA1-202ENST00000398452 SART1O43290 800 aaKnown RBP14.97□□□□□ -0.01
SKA1-202ENST00000398452 CXCL14O95715 111 aa14.97□□□□□ -0.01
SKA1-202ENST00000398452 CTSAP10619 480 aa14.97□□□□□ -0.01
SKA1-202ENST00000398452 PLA2G4AP47712 749 aa14.97□□□□□ -0.01
SKA1-202ENST00000398452 TUFMP49411 452 aaKnown RBP14.97□□□□□ -0.01
SKA1-202ENST00000398452 NDUFV1P49821 464 aa14.97□□□□□ -0.01
SKA1-202ENST00000398452 RPL10AP62906 217 aaKnown RBP14.97□□□□□ -0.01
SKA1-202ENST00000398452 MGAT5BQ3V5L5 792 aa14.97□□□□□ -0.01
SKA1-202ENST00000398452 CFAP221Q4G0U5 840 aa14.97□□□□□ -0.01
SKA1-202ENST00000398452 TPGS2Q68CL5 300 aa14.97□□□□□ -0.01
SKA1-202ENST00000398452 SLC8B1Q6J4K2 584 aa14.97□□□□□ -0.01
SKA1-202ENST00000398452 CLEC20AQ6ZU45 233 aa14.97□□□□□ -0.01
SKA1-202ENST00000398452 MON1BQ7L1V2 547 aa14.97□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms