RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 PPP1R9BQ96SB3 815 aa7.43□□□□□ -1.22
LIMA1-202ENST00000394943 CYTH4Q9UIA0 394 aa7.43□□□□□ -1.22
LIMA1-202ENST00000394943 A8MXQ7 604 aa7.43□□□□□ -1.22
LIMA1-202ENST00000394943 SERPING1P05155 500 aa7.43□□□□□ -1.22
LIMA1-202ENST00000394943 KRT19P08727 400 aa7.43□□□□□ -1.22
LIMA1-202ENST00000394943 CCDC172P0C7W6 258 aa7.43□□□□□ -1.22
LIMA1-202ENST00000394943 CSH1P0DML2 217 aa7.43□□□□□ -1.22
LIMA1-202ENST00000394943 CSH2P0DML3 217 aa7.43□□□□□ -1.22
LIMA1-202ENST00000394943 PSEN1P49768 467 aa7.43□□□□□ -1.22
LIMA1-202ENST00000394943 TCERG1LQ5VWI1 586 aa7.43□□□□□ -1.22
LIMA1-202ENST00000394943 PLPP4Q5VZY2 271 aa7.43□□□□□ -1.22
LIMA1-202ENST00000394943 DEFB123Q8N688 67 aa7.43□□□□□ -1.22
LIMA1-202ENST00000394943 C1orf131Q8NDD1 294 aaKnown RBP7.43□□□□□ -1.22
LIMA1-202ENST00000394943 ATXN2LQ8WWM7 1075 aaKnown RBP7.43□□□□□ -1.22
LIMA1-202ENST00000394943 CNGB3Q9NQW8 809 aa7.43□□□□□ -1.22
LIMA1-202ENST00000394943 MAN1C1Q9NR34 630 aa7.43□□□□□ -1.22
LIMA1-202ENST00000394943 ABHD10Q9NUJ1 306 aa7.43□□□□□ -1.22
LIMA1-202ENST00000394943 UXTQ9UBK9 157 aaPredicted RBP7.43□□□□□ -1.22
LIMA1-202ENST00000394943 LCMT1Q9UIC8 334 aa7.43□□□□□ -1.22
LIMA1-202ENST00000394943 CXorf51AA0A1B0GTR3 108 aa7.42□□□□□ -1.22
LIMA1-202ENST00000394943 SLC38A8A6NNN8 435 aa7.42□□□□□ -1.22
LIMA1-202ENST00000394943 MBTPS2O43462 519 aa7.42□□□□□ -1.22
LIMA1-202ENST00000394943 HCRTO43612 131 aa7.42□□□□□ -1.22
LIMA1-202ENST00000394943 ATP2C2O75185 946 aa7.42□□□□□ -1.22
LIMA1-202ENST00000394943 EPCAMP16422 314 aa7.42□□□□□ -1.22
LIMA1-202ENST00000394943 MTHFRP42898 656 aa7.42□□□□□ -1.22
LIMA1-202ENST00000394943 SLC7A9P82251 487 aa7.42□□□□□ -1.22
LIMA1-202ENST00000394943 APBA1Q02410 837 aa7.42□□□□□ -1.22
LIMA1-202ENST00000394943 C1QBPQ07021 282 aaKnown RBP7.42□□□□□ -1.22
LIMA1-202ENST00000394943 C5orf22Q49AR2 442 aa7.42□□□□□ -1.22
LIMA1-202ENST00000394943 TMC7Q7Z402 723 aa7.42□□□□□ -1.22
LIMA1-202ENST00000394943 ITIH5Q86UX2 942 aa7.42□□□□□ -1.22
LIMA1-202ENST00000394943 CENPIQ92674 756 aaPredicted RBP7.42□□□□□ -1.22
LIMA1-202ENST00000394943 NXPE3Q969Y0 559 aa7.42□□□□□ -1.22
LIMA1-202ENST00000394943 RETREG1Q9H6L5 497 aa7.42□□□□□ -1.22
LIMA1-202ENST00000394943 PCDHGC5Q9Y5F6 944 aa7.42□□□□□ -1.22
LIMA1-202ENST00000394943 GRXCR2A6NFK2 248 aa7.42□□□□□ -1.22
LIMA1-202ENST00000394943 RFXAPO00287 272 aa7.42□□□□□ -1.22
LIMA1-202ENST00000394943 MMP8P22894 467 aa7.42□□□□□ -1.22
LIMA1-202ENST00000394943 FCARP24071 287 aa7.42□□□□□ -1.22
LIMA1-202ENST00000394943 SLC39A12Q504Y0 691 aa7.42□□□□□ -1.22
LIMA1-202ENST00000394943 MDH1BQ5I0G3 518 aa7.42□□□□□ -1.22
LIMA1-202ENST00000394943 SPOUT1Q5T280 376 aaKnown RBP7.42□□□□□ -1.22
LIMA1-202ENST00000394943 C10orf76Q5T2E6 689 aa7.42□□□□□ -1.22
LIMA1-202ENST00000394943 GADD45GIP1Q8TAE8 222 aaPredicted RBP7.42□□□□□ -1.22
LIMA1-202ENST00000394943 HASPINQ8TF76 798 aa7.42□□□□□ -1.22
LIMA1-202ENST00000394943 CYFIP2Q96F07 1278 aa7.42□□□□□ -1.22
LIMA1-202ENST00000394943 ZFRQ96KR1 1074 aaKnown RBP7.42□□□□□ -1.22
LIMA1-202ENST00000394943 B3GALT6Q96L58 329 aa7.42□□□□□ -1.22
LIMA1-202ENST00000394943 TLE6Q9H808 572 aa7.42□□□□□ -1.22
LIMA1-202ENST00000394943 UBE2ZQ9H832 354 aaPredicted RBP7.42□□□□□ -1.22
LIMA1-202ENST00000394943 DNMT3BQ9UBC3 853 aaKnown RBP7.42□□□□□ -1.22
LIMA1-202ENST00000394943 TMEM59LQ9UK28 342 aa7.42□□□□□ -1.22
LIMA1-202ENST00000394943 LINC01565O15544 149 aa7.42□□□□□ -1.22
LIMA1-202ENST00000394943 BEST1O76090 585 aa7.42□□□□□ -1.22
LIMA1-202ENST00000394943 CHRM1P11229 460 aaPredicted RBP7.42□□□□□ -1.22
LIMA1-202ENST00000394943 MRE11P49959 708 aa7.42□□□□□ -1.22
LIMA1-202ENST00000394943 NRG1Q02297 640 aaPredicted RBP7.42□□□□□ -1.22
LIMA1-202ENST00000394943 USP4Q13107 963 aa7.42□□□□□ -1.22
LIMA1-202ENST00000394943 MTA1Q13330 715 aa7.42□□□□□ -1.22
LIMA1-202ENST00000394943 OLFML1Q6UWY5 402 aa7.42□□□□□ -1.22
LIMA1-202ENST00000394943 CNGA4Q8IV77 575 aa7.42□□□□□ -1.22
LIMA1-202ENST00000394943 CCDC170Q8IYT3 715 aa7.42□□□□□ -1.22
LIMA1-202ENST00000394943 NUP93Q8N1F7 819 aa7.42□□□□□ -1.22
LIMA1-202ENST00000394943 MYLIPQ8WY64 445 aa7.42□□□□□ -1.22
LIMA1-202ENST00000394943 RABGGTAQ92696 567 aa7.42□□□□□ -1.22
LIMA1-202ENST00000394943 CDK5RAP1Q96SZ6 601 aaKnown RBP7.42□□□□□ -1.22
LIMA1-202ENST00000394943 PCDHB18PQ96TA0 734 aa7.42□□□□□ -1.22
LIMA1-202ENST00000394943 AGPAT1Q99943 283 aa7.42□□□□□ -1.22
LIMA1-202ENST00000394943 GDE1Q9NZC3 331 aa7.42□□□□□ -1.22
LIMA1-202ENST00000394943 TSPAN16Q9UKR8 245 aa7.42□□□□□ -1.22
LIMA1-202ENST00000394943 LRRC53A6NM62 1247 aa7.41□□□□□ -1.22
LIMA1-202ENST00000394943 PJA2O43164 708 aa7.41□□□□□ -1.22
LIMA1-202ENST00000394943 TRIM21P19474 475 aaKnown RBP7.41□□□□□ -1.22
LIMA1-202ENST00000394943 NRIP1P48552 1158 aa7.41□□□□□ -1.22
LIMA1-202ENST00000394943 PDE6CP51160 858 aa7.41□□□□□ -1.22
LIMA1-202ENST00000394943 PTK2Q05397 1052 aa7.41□□□□□ -1.22
LIMA1-202ENST00000394943 ACBD5Q5T8D3 534 aaPredicted RBP7.41□□□□□ -1.22
LIMA1-202ENST00000394943 RRAGAQ7L523 313 aa7.41□□□□□ -1.22
LIMA1-202ENST00000394943 SLC47A2Q86VL8 602 aa7.41□□□□□ -1.22
LIMA1-202ENST00000394943 ARHGAP18Q8N392 663 aa7.41□□□□□ -1.22
LIMA1-202ENST00000394943 PPM1KQ8N3J5 372 aa7.41□□□□□ -1.22
LIMA1-202ENST00000394943 NIPA2Q8N8Q9 360 aa7.41□□□□□ -1.22
LIMA1-202ENST00000394943 FAM71BQ8TC56 605 aa7.41□□□□□ -1.22
LIMA1-202ENST00000394943 FNIP1Q8TF40 1166 aa7.41□□□□□ -1.22
LIMA1-202ENST00000394943 E2F7Q96AV8 911 aa7.41□□□□□ -1.22
LIMA1-202ENST00000394943 FBXO44Q9H4M3 255 aa7.41□□□□□ -1.22
LIMA1-202ENST00000394943 ARHGAP20Q9P2F6 1191 aa7.41□□□□□ -1.22
LIMA1-202ENST00000394943 CD207Q9UJ71 328 aa7.41□□□□□ -1.22
LIMA1-202ENST00000394943 PCDHB4Q9Y5E5 795 aa7.41□□□□□ -1.22
LIMA1-202ENST00000394943 KMT2EQ8IZD2 1858 aa7.41□□□□□ -1.22
LIMA1-202ENST00000394943 REV3LO60673 3130 aa7.41□□□□□ -1.22
LIMA1-202ENST00000394943 A0A0A6YYK5 440 aaPredicted RBP7.41□□□□□ -1.22
LIMA1-202ENST00000394943 SERPINC1P01008 464 aa7.41□□□□□ -1.22
LIMA1-202ENST00000394943 FAM200BP0CF97 657 aa7.41□□□□□ -1.22
LIMA1-202ENST00000394943 MYBL1P10243 752 aa7.41□□□□□ -1.22
LIMA1-202ENST00000394943 CDK11BP21127 795 aaKnown RBP7.41□□□□□ -1.22
LIMA1-202ENST00000394943 GNA15P30679 374 aa7.41□□□□□ -1.22
LIMA1-202ENST00000394943 POLR2FP61218 127 aaKnown RBP7.41□□□□□ -1.22
LIMA1-202ENST00000394943 PLEKHA7Q6IQ23 1121 aa7.41□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms