RNA–Protein interactions for RNA: ENST00000381835.9

CIITA-202, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best) BASIC

Gene CIITA, Length 2,344 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-202ENST00000381835 HSPA9P38646 679 aaKnown RBP13.1□□□□□ -0.31
CIITA-202ENST00000381835 MNAT1P51948 309 aa13.1□□□□□ -0.31
CIITA-202ENST00000381835 PSMC1P62191 440 aaKnown RBP13.1□□□□□ -0.31
CIITA-202ENST00000381835 CNGA2Q16280 664 aa13.1□□□□□ -0.31
CIITA-202ENST00000381835 CNPY4Q8N129 248 aa13.1□□□□□ -0.31
CIITA-202ENST00000381835 WDTC1Q8N5D0 677 aa13.1□□□□□ -0.31
CIITA-202ENST00000381835 UBA3Q8TBC4 463 aa13.1□□□□□ -0.31
CIITA-202ENST00000381835 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP13.1□□□□□ -0.31
CIITA-202ENST00000381835 NRDE2Q9H7Z3 1164 aa13.1□□□□□ -0.31
CIITA-202ENST00000381835 DDX43Q9NXZ2 648 aaKnown RBP13.1□□□□□ -0.31
CIITA-202ENST00000381835 ADAM22Q9P0K1 906 aa13.1□□□□□ -0.31
CIITA-202ENST00000381835 CTTNBP2NLQ9P2B4 639 aa13.1□□□□□ -0.31
CIITA-202ENST00000381835 PRKAG2Q9UGJ0 569 aa13.1□□□□□ -0.31
CIITA-202ENST00000381835 TSPAN16Q9UKR8 245 aa13.1□□□□□ -0.31
CIITA-202ENST00000381835 KIAA1257Q9ULG3 409 aa13.1□□□□□ -0.31
CIITA-202ENST00000381835 A0A0A6YYK5 440 aaPredicted RBP13.1□□□□□ -0.31
CIITA-202ENST00000381835 LSM8O95777 96 aaKnown RBP13.1□□□□□ -0.31
CIITA-202ENST00000381835 ODC1P11926 461 aa13.1□□□□□ -0.31
CIITA-202ENST00000381835 SEC24CP53992 1094 aa13.1□□□□□ -0.31
CIITA-202ENST00000381835 FAM117BQ6P1L5 589 aa13.1□□□□□ -0.31
CIITA-202ENST00000381835 LLGL2Q6P1M3 1020 aa13.1□□□□□ -0.31
CIITA-202ENST00000381835 TMCO2Q7Z6W1 182 aaPredicted RBP13.1□□□□□ -0.31
CIITA-202ENST00000381835 NLRP14Q86W24 1093 aa13.1□□□□□ -0.31
CIITA-202ENST00000381835 TMEM86AQ8N2M4 240 aa13.1□□□□□ -0.31
CIITA-202ENST00000381835 CCT8L2Q96SF2 557 aa13.1□□□□□ -0.31
CIITA-202ENST00000381835 CNOT8Q9UFF9 292 aaKnown RBP13.1□□□□□ -0.31
CIITA-202ENST00000381835 NCANO14594 1321 aa13.09□□□□□ -0.31
CIITA-202ENST00000381835 LTBP2Q14767 1821 aa13.09□□□□□ -0.31
CIITA-202ENST00000381835 ABHD14A-ACY1A0A1B0GW23 586 aa13.09□□□□□ -0.31
CIITA-202ENST00000381835 CES2O00748 559 aa13.09□□□□□ -0.31
CIITA-202ENST00000381835 GABRDO14764 452 aa13.09□□□□□ -0.31
CIITA-202ENST00000381835 ATP2C2O75185 946 aa13.09□□□□□ -0.31
CIITA-202ENST00000381835 HPDP32754 393 aaPredicted RBP13.09□□□□□ -0.31
CIITA-202ENST00000381835 GOLGA7BQ2TAP0 167 aa13.09□□□□□ -0.31
CIITA-202ENST00000381835 SWT1Q5T5J6 900 aaKnown RBP13.09□□□□□ -0.31
CIITA-202ENST00000381835 RNF187Q5TA31 235 aaPredicted RBP13.09□□□□□ -0.31
CIITA-202ENST00000381835 MON1BQ7L1V2 547 aa13.09□□□□□ -0.31
CIITA-202ENST00000381835 CRYBG2Q8N1P7 616 aa13.09□□□□□ -0.31
CIITA-202ENST00000381835 B3GALNT2Q8NCR0 500 aa13.09□□□□□ -0.31
CIITA-202ENST00000381835 RSPH1Q8WYR4 309 aa13.09□□□□□ -0.31
CIITA-202ENST00000381835 TNIP3Q96KP6 325 aa13.09□□□□□ -0.31
CIITA-202ENST00000381835 GOLPH3Q9H4A6 298 aa13.09□□□□□ -0.31
CIITA-202ENST00000381835 TMBIM4Q9HC24 238 aa13.09□□□□□ -0.31
CIITA-202ENST00000381835 TMEM59LQ9UK28 342 aa13.09□□□□□ -0.31
CIITA-202ENST00000381835 GTF3C4Q9UKN8 822 aa13.09□□□□□ -0.31
CIITA-202ENST00000381835 COG5Q9UP83 839 aa13.09□□□□□ -0.31
CIITA-202ENST00000381835 E7EVH7 732 aa13.08□□□□□ -0.31
CIITA-202ENST00000381835 NRP1O14786 923 aa13.08□□□□□ -0.31
CIITA-202ENST00000381835 CEP104O60308 925 aa13.08□□□□□ -0.31
CIITA-202ENST00000381835 FSBPO95073 299 aa13.08□□□□□ -0.31
CIITA-202ENST00000381835 MYZAPP0CAP1 466 aa13.08□□□□□ -0.31
CIITA-202ENST00000381835 CCDC130P13994 396 aa13.08□□□□□ -0.31
CIITA-202ENST00000381835 RRM1P23921 792 aa13.08□□□□□ -0.31
CIITA-202ENST00000381835 PBX3P40426 434 aa13.08□□□□□ -0.31
CIITA-202ENST00000381835 LHX1P48742 406 aa13.08□□□□□ -0.31
CIITA-202ENST00000381835 DEFB103AP81534 67 aa13.08□□□□□ -0.31
CIITA-202ENST00000381835 IFI16Q16666 785 aaKnown RBP13.08□□□□□ -0.31
CIITA-202ENST00000381835 CCDC142Q17RM4 750 aa13.08□□□□□ -0.31
CIITA-202ENST00000381835 LCLAT1Q6UWP7 414 aa13.08□□□□□ -0.31
CIITA-202ENST00000381835 OTOP2Q7RTS6 562 aa13.08□□□□□ -0.31
CIITA-202ENST00000381835 PHF13Q86YI8 300 aaPredicted RBP13.08□□□□□ -0.31
CIITA-202ENST00000381835 RHOT2Q8IXI1 618 aa13.08□□□□□ -0.31
CIITA-202ENST00000381835 ARFGAP2Q8N6H7 521 aa13.08□□□□□ -0.31
CIITA-202ENST00000381835 MYCBPAPQ8TBZ2 947 aa13.08□□□□□ -0.31
CIITA-202ENST00000381835 PBKQ96KB5 322 aa13.08□□□□□ -0.31
CIITA-202ENST00000381835 MRPL9Q9BYD2 267 aaKnown RBP13.08□□□□□ -0.31
CIITA-202ENST00000381835 ZNF518BQ9C0D4 1074 aa13.08□□□□□ -0.31
CIITA-202ENST00000381835 DNAI2Q9GZS0 605 aa13.08□□□□□ -0.31
CIITA-202ENST00000381835 LHX5Q9H2C1 402 aa13.08□□□□□ -0.31
CIITA-202ENST00000381835 CYTH4Q9UIA0 394 aa13.08□□□□□ -0.31
CIITA-202ENST00000381835 NT5C1B-RDH14C9J2C7 533 aa13.08□□□□□ -0.32
CIITA-202ENST00000381835 M0QZQ0 153 aa13.08□□□□□ -0.32
CIITA-202ENST00000381835 MYO1FO00160 1098 aa13.08□□□□□ -0.32
CIITA-202ENST00000381835 TADA2AO75478 443 aa13.08□□□□□ -0.32
CIITA-202ENST00000381835 ALDH2P05091 517 aa13.08□□□□□ -0.32
CIITA-202ENST00000381835 MMP8P22894 467 aa13.08□□□□□ -0.32
CIITA-202ENST00000381835 ADORA2BP29275 332 aa13.08□□□□□ -0.32
CIITA-202ENST00000381835 CDH5P33151 784 aaPredicted RBP13.08□□□□□ -0.32
CIITA-202ENST00000381835 HSD17B3P37058 310 aa13.08□□□□□ -0.32
CIITA-202ENST00000381835 FNTAP49354 379 aa13.08□□□□□ -0.32
CIITA-202ENST00000381835 BCAR1P56945 870 aa13.08□□□□□ -0.32
CIITA-202ENST00000381835 CUL1Q13616 776 aa13.08□□□□□ -0.32
CIITA-202ENST00000381835 PTPROQ16827 1216 aa13.08□□□□□ -0.32
CIITA-202ENST00000381835 LRIG3Q6UXM1 1119 aa13.08□□□□□ -0.32
CIITA-202ENST00000381835 YTHDF3Q7Z739 585 aaKnown RBP13.08□□□□□ -0.32
CIITA-202ENST00000381835 ERICH1Q86X53 443 aa13.08□□□□□ -0.32
CIITA-202ENST00000381835 METTL23Q86XA0 190 aa13.08□□□□□ -0.32
CIITA-202ENST00000381835 C7orf61Q8IZ16 206 aa13.08□□□□□ -0.32
CIITA-202ENST00000381835 EIF1ADQ8N9N8 165 aaKnown RBP13.08□□□□□ -0.32
CIITA-202ENST00000381835 TPCN2Q8NHX9 752 aa13.08□□□□□ -0.32
CIITA-202ENST00000381835 TOP1MTQ969P6 601 aa13.08□□□□□ -0.32
CIITA-202ENST00000381835 SUSD3Q96L08 255 aa13.08□□□□□ -0.32
CIITA-202ENST00000381835 NUP85Q9BW27 656 aa13.08□□□□□ -0.32
CIITA-202ENST00000381835 HESX1Q9UBX0 185 aa13.08□□□□□ -0.32
CIITA-202ENST00000381835 TSC2P49815 1807 aa13.08□□□□□ -0.32
CIITA-202ENST00000381835 DGKIO75912 1065 aa13.07□□□□□ -0.32
CIITA-202ENST00000381835 FAM107AO95990 144 aa13.07□□□□□ -0.32
CIITA-202ENST00000381835 AMHP03971 560 aa13.07□□□□□ -0.32
CIITA-202ENST00000381835 CYP1A2P05177 515 aa13.07□□□□□ -0.32
CIITA-202ENST00000381835 FAM163BP0C2L3 166 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms