RNA–Protein interactions for RNA: ENST00000377575.2

HMGN4-201, Transcript of high mobility group nucleosomal binding domain 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGN4, Length 1,225 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4-201ENST00000377575 B3GNT5Q9BYG0 378 aa17.89■□□□□ 0.45
HMGN4-201ENST00000377575 DNAI2Q9GZS0 605 aa17.89■□□□□ 0.45
HMGN4-201ENST00000377575 NIF3L1Q9GZT8 377 aa17.89■□□□□ 0.45
HMGN4-201ENST00000377575 SMG9Q9H0W8 520 aaKnown RBP17.89■□□□□ 0.45
HMGN4-201ENST00000377575 C8orf33Q9H7E9 229 aaPredicted RBP17.89■□□□□ 0.45
HMGN4-201ENST00000377575 TDP1Q9NUW8 608 aa17.89■□□□□ 0.45
HMGN4-201ENST00000377575 FAM86C1Q9NVL1 165 aa17.89■□□□□ 0.45
HMGN4-201ENST00000377575 MAN1B1Q9UKM7 699 aa17.89■□□□□ 0.45
HMGN4-201ENST00000377575 F5P12259 2224 aa17.88■□□□□ 0.45
HMGN4-201ENST00000377575 CKMP06732 381 aa17.88■□□□□ 0.45
HMGN4-201ENST00000377575 USP17L7P0C7H9 530 aa17.88■□□□□ 0.45
HMGN4-201ENST00000377575 PFKLP17858 780 aa17.88■□□□□ 0.45
HMGN4-201ENST00000377575 CCNE1P24864 410 aa17.88■□□□□ 0.45
HMGN4-201ENST00000377575 PPP3CCP48454 512 aa17.88■□□□□ 0.45
HMGN4-201ENST00000377575 MRE11P49959 708 aa17.88■□□□□ 0.45
HMGN4-201ENST00000377575 KPNA1P52294 538 aaPredicted RBP17.88■□□□□ 0.45
HMGN4-201ENST00000377575 NDST1P52848 882 aa17.88■□□□□ 0.45
HMGN4-201ENST00000377575 UBE2HP62256 183 aa17.88■□□□□ 0.45
HMGN4-201ENST00000377575 INCA1Q0VD86 236 aa17.88■□□□□ 0.45
HMGN4-201ENST00000377575 DCAF17Q5H9S7 520 aaPredicted RBP17.88■□□□□ 0.45
HMGN4-201ENST00000377575 TCERG1LQ5VWI1 586 aa17.88■□□□□ 0.45
HMGN4-201ENST00000377575 ANKRD40Q6AI12 368 aa17.88■□□□□ 0.45
HMGN4-201ENST00000377575 ACOT1Q86TX2 421 aa17.88■□□□□ 0.45
HMGN4-201ENST00000377575 FAM35AQ86V20 835 aa17.88■□□□□ 0.45
HMGN4-201ENST00000377575 FBXL13Q8NEE6 735 aa17.88■□□□□ 0.45
HMGN4-201ENST00000377575 FAM3CQ92520 227 aa17.88■□□□□ 0.45
HMGN4-201ENST00000377575 USP13Q92995 863 aaPredicted RBP17.88■□□□□ 0.45
HMGN4-201ENST00000377575 LRRC3BQ96PB8 259 aa17.88■□□□□ 0.45
HMGN4-201ENST00000377575 CYP3A43Q9HB55 503 aa17.88■□□□□ 0.45
HMGN4-201ENST00000377575 TRPM5Q9NZQ8 1165 aa17.88■□□□□ 0.45
HMGN4-201ENST00000377575 MTF2Q9Y483 593 aaPredicted RBP17.88■□□□□ 0.45
HMGN4-201ENST00000377575 TRIM49BA6NDI0 452 aa17.87■□□□□ 0.45
HMGN4-201ENST00000377575 CLDN5O00501 218 aa17.87■□□□□ 0.45
HMGN4-201ENST00000377575 LRRN2O75325 713 aa17.87■□□□□ 0.45
HMGN4-201ENST00000377575 RTN3O95197 1032 aaPredicted RBP17.87■□□□□ 0.45
HMGN4-201ENST00000377575 RPS9P46781 194 aaKnown RBP17.87■□□□□ 0.45
HMGN4-201ENST00000377575 PMS1P54277 932 aaKnown RBP17.87■□□□□ 0.45
HMGN4-201ENST00000377575 USP46P62068 366 aa17.87■□□□□ 0.45
HMGN4-201ENST00000377575 CC2D1AQ6P1N0 951 aaPredicted RBP17.87■□□□□ 0.45
HMGN4-201ENST00000377575 ALYREFQ86V81 257 aaKnown RBP17.87■□□□□ 0.45
HMGN4-201ENST00000377575 C1orf210Q8IVY1 113 aa17.87■□□□□ 0.45
HMGN4-201ENST00000377575 FAXDC2Q96IV6 333 aa17.87■□□□□ 0.45
HMGN4-201ENST00000377575 ZFYVE19Q96K21 471 aa17.87■□□□□ 0.45
HMGN4-201ENST00000377575 SLITRK1Q96PX8 696 aa17.87■□□□□ 0.45
HMGN4-201ENST00000377575 APOBEC3GQ9HC16 384 aaKnown RBP17.87■□□□□ 0.45
HMGN4-201ENST00000377575 DMAP1Q9NPF5 467 aaPredicted RBP17.87■□□□□ 0.45
HMGN4-201ENST00000377575 UTP3Q9NQZ2 479 aaKnown RBP eCLIP17.87■□□□□ 0.45
HMGN4-201ENST00000377575 KRT82Q9NSB4 513 aa17.87■□□□□ 0.45
HMGN4-201ENST00000377575 HMGXB4Q9UGU5 601 aa17.87■□□□□ 0.45
HMGN4-201ENST00000377575 NDRG2Q9UN36 371 aaKnown RBP17.87■□□□□ 0.45
HMGN4-201ENST00000377575 CCL26Q9Y258 94 aa17.87■□□□□ 0.45
HMGN4-201ENST00000377575 MYO15AQ9UKN7 3530 aa17.87■□□□□ 0.45
HMGN4-201ENST00000377575 CACNA2D1P54289 1103 aa17.86■□□□□ 0.45
HMGN4-201ENST00000377575 ISM2Q6H9L7 571 aa17.86■□□□□ 0.45
HMGN4-201ENST00000377575 RALGPS2Q86X27 583 aaPredicted RBP17.86■□□□□ 0.45
HMGN4-201ENST00000377575 NUP93Q8N1F7 819 aa17.86■□□□□ 0.45
HMGN4-201ENST00000377575 CRYBG2Q8N1P7 616 aa17.86■□□□□ 0.45
HMGN4-201ENST00000377575 CLDN23Q96B33 292 aa17.86■□□□□ 0.45
HMGN4-201ENST00000377575 CEP63Q96MT8 703 aa17.86■□□□□ 0.45
HMGN4-201ENST00000377575 PHOX2BQ99453 314 aa17.86■□□□□ 0.45
HMGN4-201ENST00000377575 NT5C1AQ9BXI3 368 aa17.86■□□□□ 0.45
HMGN4-201ENST00000377575 TMEM30AQ9NV96 361 aa17.86■□□□□ 0.45
HMGN4-201ENST00000377575 SPATA6Q9NWH7 488 aaPredicted RBP17.86■□□□□ 0.45
HMGN4-201ENST00000377575 RAB20Q9NX57 234 aa17.86■□□□□ 0.45
HMGN4-201ENST00000377575 ARMCX3Q9UH62 379 aaPredicted RBP17.86■□□□□ 0.45
HMGN4-201ENST00000377575 FANCMQ8IYD8 2048 aa17.86■□□□□ 0.45
HMGN4-201ENST00000377575 BICDL2A1A5D9 508 aa17.85■□□□□ 0.45
HMGN4-201ENST00000377575 C2orf78A6NCI8 922 aa17.85■□□□□ 0.45
HMGN4-201ENST00000377575 SHISA7A6NL88 538 aa17.85■□□□□ 0.45
HMGN4-201ENST00000377575 SPECC1L-ADORA2AF8WAN1 911 aa17.85■□□□□ 0.45
HMGN4-201ENST00000377575 AP1G2O75843 785 aa17.85■□□□□ 0.45
HMGN4-201ENST00000377575 CCDC130P13994 396 aa17.85■□□□□ 0.45
HMGN4-201ENST00000377575 CTHP32929 405 aa17.85■□□□□ 0.45
HMGN4-201ENST00000377575 NBL1P41271 181 aa17.85■□□□□ 0.45
HMGN4-201ENST00000377575 IFRD2Q12894 506 aaPredicted RBP17.85■□□□□ 0.45
HMGN4-201ENST00000377575 USP4Q13107 963 aa17.85■□□□□ 0.45
HMGN4-201ENST00000377575 ORC1Q13415 861 aa17.85■□□□□ 0.45
HMGN4-201ENST00000377575 MORC3Q14149 939 aa17.85■□□□□ 0.45
HMGN4-201ENST00000377575 ITPRIPL2Q3MIP1 535 aa17.85■□□□□ 0.45
HMGN4-201ENST00000377575 WDR44Q5JSH3 913 aa17.85■□□□□ 0.45
HMGN4-201ENST00000377575 KLHL10Q6JEL2 608 aa17.85■□□□□ 0.45
HMGN4-201ENST00000377575 FUKQ8N0W3 1084 aa17.85■□□□□ 0.45
HMGN4-201ENST00000377575 TTC39CQ8N584 583 aa17.85■□□□□ 0.45
HMGN4-201ENST00000377575 PDZD8Q8NEN9 1154 aa17.85■□□□□ 0.45
HMGN4-201ENST00000377575 SLC2A14Q8TDB8 520 aa17.85■□□□□ 0.45
HMGN4-201ENST00000377575 OVCA2Q8WZ82 227 aa17.85■□□□□ 0.45
HMGN4-201ENST00000377575 IER2Q9BTL4 223 aa17.85■□□□□ 0.45
HMGN4-201ENST00000377575 METTL14Q9HCE5 456 aaKnown RBP17.85■□□□□ 0.45
HMGN4-201ENST00000377575 GTSE1Q9NYZ3 720 aa17.85■□□□□ 0.45
HMGN4-201ENST00000377575 CACNA1IQ9P0X4 2223 aa17.85■□□□□ 0.45
HMGN4-201ENST00000377575 PROB1E7EW31 1015 aa17.84■□□□□ 0.45
HMGN4-201ENST00000377575 LAMTOR5O43504 91 aa17.84■□□□□ 0.45
HMGN4-201ENST00000377575 CILPO75339 1184 aa17.84■□□□□ 0.45
HMGN4-201ENST00000377575 CD44P16070 742 aaKnown RBP17.84■□□□□ 0.45
HMGN4-201ENST00000377575 HDCP19113 662 aa17.84■□□□□ 0.45
HMGN4-201ENST00000377575 CD58P19256 250 aa17.84■□□□□ 0.45
HMGN4-201ENST00000377575 YWHAQP27348 245 aa17.84■□□□□ 0.45
HMGN4-201ENST00000377575 SLC5A3P53794 718 aa17.84■□□□□ 0.45
HMGN4-201ENST00000377575 TAF10Q12962 218 aa17.84■□□□□ 0.45
HMGN4-201ENST00000377575 LRRC32Q14392 662 aa17.84■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms