RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 HMGA1P17096 107 aaKnown RBP23.44■■□□□ 1.34
SHMT1-203ENST00000354098 PTPN2P17706 415 aa23.44■■□□□ 1.34
SHMT1-203ENST00000354098 USP46P62068 366 aa23.44■■□□□ 1.34
SHMT1-203ENST00000354098 VEPH1Q14D04 833 aa23.44■■□□□ 1.34
SHMT1-203ENST00000354098 STILQ15468 1287 aa23.44■■□□□ 1.34
SHMT1-203ENST00000354098 ATAT1Q5SQI0 421 aa23.44■■□□□ 1.34
SHMT1-203ENST00000354098 DENND1BQ6P3S1 775 aa23.44■■□□□ 1.34
SHMT1-203ENST00000354098 LRRC3Q9BY71 257 aa23.44■■□□□ 1.34
SHMT1-203ENST00000354098 ZNF334Q9HCZ1 680 aaPredicted RBP23.44■■□□□ 1.34
SHMT1-203ENST00000354098 CAPN11Q9UMQ6 739 aa23.44■■□□□ 1.34
SHMT1-203ENST00000354098 MAGED2Q9UNF1 606 aaPredicted RBP23.44■■□□□ 1.34
SHMT1-203ENST00000354098 ASB3Q9Y575 518 aa23.44■■□□□ 1.34
SHMT1-203ENST00000354098 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP23.44■■□□□ 1.34
SHMT1-203ENST00000354098 C2orf16Q68DN1 1984 aa23.43■■□□□ 1.34
SHMT1-203ENST00000354098 HHLA1C9JL84 531 aa23.43■■□□□ 1.34
SHMT1-203ENST00000354098 MED7O43513 233 aa23.43■■□□□ 1.34
SHMT1-203ENST00000354098 CASP14P31944 242 aa23.43■■□□□ 1.34
SHMT1-203ENST00000354098 BCAT1P54687 386 aa23.43■■□□□ 1.34
SHMT1-203ENST00000354098 TAF3Q5VWG9 929 aa23.43■■□□□ 1.34
SHMT1-203ENST00000354098 E4F1Q66K89 784 aaPredicted RBP23.43■■□□□ 1.34
SHMT1-203ENST00000354098 GPRIN1Q7Z2K8 1008 aa23.43■■□□□ 1.34
SHMT1-203ENST00000354098 ITIH5Q86UX2 942 aa23.43■■□□□ 1.34
SHMT1-203ENST00000354098 EPS8L1Q8TE68 723 aa23.43■■□□□ 1.34
SHMT1-203ENST00000354098 DDX1Q92499 740 aaKnown RBP23.43■■□□□ 1.34
SHMT1-203ENST00000354098 SUSD6Q92537 303 aa23.43■■□□□ 1.34
SHMT1-203ENST00000354098 SECISBP2LQ93073 1101 aaKnown RBP23.43■■□□□ 1.34
SHMT1-203ENST00000354098 MYO6Q9UM54 1294 aa23.43■■□□□ 1.34
SHMT1-203ENST00000354098 NRG2O14511 850 aaPredicted RBP23.42■■□□□ 1.34
SHMT1-203ENST00000354098 TNFRSF10BO14763 440 aa23.42■■□□□ 1.34
SHMT1-203ENST00000354098 RHOP08100 348 aa23.42■■□□□ 1.34
SHMT1-203ENST00000354098 BST2Q10589 180 aaKnown RBP23.42■■□□□ 1.34
SHMT1-203ENST00000354098 SMAD4Q13485 552 aaKnown RBP23.42■■□□□ 1.34
SHMT1-203ENST00000354098 TAF12Q16514 161 aa23.42■■□□□ 1.34
SHMT1-203ENST00000354098 CYP26C1Q6V0L0 522 aa23.42■■□□□ 1.34
SHMT1-203ENST00000354098 DENND5BQ6ZUT9 1274 aa23.42■■□□□ 1.34
SHMT1-203ENST00000354098 TMC6Q7Z403 805 aa23.42■■□□□ 1.34
SHMT1-203ENST00000354098 IRF2BP2Q7Z5L9 587 aa23.42■■□□□ 1.34
SHMT1-203ENST00000354098 TMC8Q8IU68 726 aa23.42■■□□□ 1.34
SHMT1-203ENST00000354098 SCAMP5Q8TAC9 235 aa23.42■■□□□ 1.34
SHMT1-203ENST00000354098 SLC20A1Q8WUM9 679 aa23.42■■□□□ 1.34
SHMT1-203ENST00000354098 MRFAP1L1Q96HT8 127 aa23.42■■□□□ 1.34
SHMT1-203ENST00000354098 THEGQ9P2T0 379 aa23.42■■□□□ 1.34
SHMT1-203ENST00000354098 NOCTQ9UK39 431 aaKnown RBP23.42■■□□□ 1.34
SHMT1-203ENST00000354098 C5orf42Q9H799 3197 aa23.41■■□□□ 1.34
SHMT1-203ENST00000354098 CSH1P0DML2 217 aa23.41■■□□□ 1.34
SHMT1-203ENST00000354098 CSH2P0DML3 217 aa23.41■■□□□ 1.34
SHMT1-203ENST00000354098 CCR2P41597 374 aa23.41■■□□□ 1.34
SHMT1-203ENST00000354098 PDE6CP51160 858 aa23.41■■□□□ 1.34
SHMT1-203ENST00000354098 SLC5A3P53794 718 aa23.41■■□□□ 1.34
SHMT1-203ENST00000354098 IFRD2Q12894 506 aaPredicted RBP23.41■■□□□ 1.34
SHMT1-203ENST00000354098 PABPC1LQ4VXU2 614 aaKnown RBP23.41■■□□□ 1.34
SHMT1-203ENST00000354098 PIGZQ86VD9 579 aa23.41■■□□□ 1.34
SHMT1-203ENST00000354098 PASD1Q8IV76 773 aa23.41■■□□□ 1.34
SHMT1-203ENST00000354098 NUP93Q8N1F7 819 aa23.41■■□□□ 1.34
SHMT1-203ENST00000354098 RIPOR3Q96MK2 946 aa23.41■■□□□ 1.34
SHMT1-203ENST00000354098 POMKQ9H5K3 350 aa23.41■■□□□ 1.34
SHMT1-203ENST00000354098 WDR6Q9NNW5 1121 aaKnown RBP23.41■■□□□ 1.34
SHMT1-203ENST00000354098 DOCK6Q96HP0 2047 aa23.41■■□□□ 1.34
SHMT1-203ENST00000354098 KRT9P35527 623 aa23.41■■□□□ 1.34
SHMT1-203ENST00000354098 GPD2P43304 727 aa23.41■■□□□ 1.34
SHMT1-203ENST00000354098 ZBED6P86452 979 aa23.41■■□□□ 1.34
SHMT1-203ENST00000354098 CBX2Q14781 532 aaPredicted RBP23.41■■□□□ 1.34
SHMT1-203ENST00000354098 SLC5A9Q2M3M2 681 aa23.41■■□□□ 1.34
SHMT1-203ENST00000354098 PTCRAQ6ISU1 281 aaPredicted RBP23.41■■□□□ 1.34
SHMT1-203ENST00000354098 SLC35F5Q8WV83 523 aa23.41■■□□□ 1.34
SHMT1-203ENST00000354098 IQCDQ96DY2 449 aa23.41■■□□□ 1.34
SHMT1-203ENST00000354098 CEP295NLQ96MC4 621 aa23.41■■□□□ 1.34
SHMT1-203ENST00000354098 ASAH2Q9NR71 780 aa23.41■■□□□ 1.34
SHMT1-203ENST00000354098 PCDHGC3Q9UN70 934 aa23.41■■□□□ 1.34
SHMT1-203ENST00000354098 LUC7L2Q9Y383 392 aaKnown RBP23.41■■□□□ 1.34
SHMT1-203ENST00000354098 XPO1O14980 1071 aaKnown RBP23.4■■□□□ 1.34
SHMT1-203ENST00000354098 MMEP08473 750 aa23.4■■□□□ 1.34
SHMT1-203ENST00000354098 MYL4P12829 197 aa23.4■■□□□ 1.34
SHMT1-203ENST00000354098 CHRNB2P17787 502 aa23.4■■□□□ 1.34
SHMT1-203ENST00000354098 MTHFRP42898 656 aa23.4■■□□□ 1.34
SHMT1-203ENST00000354098 KCNQ1P51787 676 aa23.4■■□□□ 1.34
SHMT1-203ENST00000354098 SLC8A3P57103 927 aa23.4■■□□□ 1.34
SHMT1-203ENST00000354098 GOLGA8FQ08AF8 430 aa23.4■■□□□ 1.34
SHMT1-203ENST00000354098 GOLGA8DPQ0D2H9 430 aa23.4■■□□□ 1.34
SHMT1-203ENST00000354098 SFMBT2Q5VUG0 894 aa23.4■■□□□ 1.34
SHMT1-203ENST00000354098 PMF1Q6P1K2 205 aa23.4■■□□□ 1.34
SHMT1-203ENST00000354098 WDTC1Q8N5D0 677 aa23.4■■□□□ 1.34
SHMT1-203ENST00000354098 TCEAL4Q96EI5 215 aa23.4■■□□□ 1.34
SHMT1-203ENST00000354098 AIPL1Q9NZN9 384 aa23.4■■□□□ 1.34
SHMT1-203ENST00000354098 CYTH4Q9UIA0 394 aa23.4■■□□□ 1.34
SHMT1-203ENST00000354098 ADCY5O95622 1261 aa23.39■■□□□ 1.34
SHMT1-203ENST00000354098 SETSIPP0DME0 302 aa23.39■■□□□ 1.34
SHMT1-203ENST00000354098 FERP16591 822 aa23.39■■□□□ 1.34
SHMT1-203ENST00000354098 GJA1P17302 382 aa23.39■■□□□ 1.34
SHMT1-203ENST00000354098 RGS7P49802 495 aa23.39■■□□□ 1.34
SHMT1-203ENST00000354098 EPHA5P54756 1037 aa23.39■■□□□ 1.34
SHMT1-203ENST00000354098 ZNF397Q8NF99 534 aaPredicted RBP23.39■■□□□ 1.34
SHMT1-203ENST00000354098 ITFG1Q8TB96 612 aa23.39■■□□□ 1.34
SHMT1-203ENST00000354098 MYRFLQ96LU7 910 aa23.39■■□□□ 1.34
SHMT1-203ENST00000354098 UBXN6Q9BZV1 441 aa23.39■■□□□ 1.34
SHMT1-203ENST00000354098 IL21Q9HBE4 155 aa23.39■■□□□ 1.34
SHMT1-203ENST00000354098 PNPLA8Q9NP80 782 aa23.39■■□□□ 1.34
SHMT1-203ENST00000354098 MYH10P35580 1976 aa23.39■■□□□ 1.34
SHMT1-203ENST00000354098 CLUHO75153 1309 aa23.39■■□□□ 1.33
SHMT1-203ENST00000354098 FAM170AA1A519 330 aa23.38■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms