RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 LHX1P48742 406 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 CTCFP49711 727 aaPredicted RBP4.36□□□□□ -1.71
MCF2-201ENST00000338585 BCAT1P54687 386 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 SLC7A5Q01650 507 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 BST2Q10589 180 aaKnown RBP4.36□□□□□ -1.71
MCF2-201ENST00000338585 ZNF268Q14587 947 aaPredicted RBP4.36□□□□□ -1.71
MCF2-201ENST00000338585 SH3PXD2AQ5TCZ1 1133 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 CC2D1AQ6P1N0 951 aaPredicted RBP4.36□□□□□ -1.71
MCF2-201ENST00000338585 FBXO38Q6PIJ6 1188 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 OLFML1Q6UWY5 402 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 TMEM110Q86TL2 294 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 FAM35AQ86V20 835 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 PIGZQ86VD9 579 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 LRRTM3Q86VH5 581 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 TMEM173Q86WV6 379 aaPredicted RBP4.36□□□□□ -1.71
MCF2-201ENST00000338585 ABI1Q8IZP0 508 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 TMEM86AQ8N2M4 240 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 MMGT1Q8N4V1 131 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 UBL4BQ8N7F7 174 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 APBB2Q92870 758 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 KHSRPQ92945 711 aaKnown RBP eCLIP4.36□□□□□ -1.71
MCF2-201ENST00000338585 PCED1BQ96HM7 432 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 SUSD3Q96L08 255 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 CALR3Q96L12 384 aaKnown RBP4.36□□□□□ -1.71
MCF2-201ENST00000338585 UROC1Q96N76 676 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 KCNK16Q96T55 309 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 HNRNPABQ99729 332 aaKnown RBP4.36□□□□□ -1.71
MCF2-201ENST00000338585 BUD13Q9BRD0 619 aaKnown RBP eCLIP4.36□□□□□ -1.71
MCF2-201ENST00000338585 MED10Q9BTT4 135 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 LRRC1Q9BTT6 524 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 ELAC1Q9H777 363 aaKnown RBP4.36□□□□□ -1.71
MCF2-201ENST00000338585 KRT82Q9NSB4 513 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 IP6K2Q9UHH9 426 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 LRFN2Q9ULH4 789 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 KRIT1O00522 736 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 NRP1O14786 923 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 CYP11A1P05108 521 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 FAM163BP0C2L3 166 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 SETSIPP0DME0 302 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 TFE3P19532 575 aaPredicted RBP4.36□□□□□ -1.71
MCF2-201ENST00000338585 SLC1A1P43005 524 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 SLC11A1P49279 550 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 NDUFV1P49821 464 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 GSCP56915 257 aaPredicted RBP4.36□□□□□ -1.71
MCF2-201ENST00000338585 RWDD2BP57060 319 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 MAP3K7CLP57077 242 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 ITIH3Q06033 890 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 PKN2Q16513 984 aaKnown RBP4.36□□□□□ -1.71
MCF2-201ENST00000338585 LONRF2Q1L5Z9 754 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 C15orf59Q2T9L4 293 aaPredicted RBP4.36□□□□□ -1.71
MCF2-201ENST00000338585 OVOS1Q6IE37 1185 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 FAM117BQ6P1L5 589 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 CLEC20AQ6ZU45 233 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 GPRIN1Q7Z2K8 1008 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 GPR161Q8N6U8 529 aaKnown RBP4.36□□□□□ -1.71
MCF2-201ENST00000338585 ANKLE1Q8NAG6 615 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 MSANTD4Q8NCY6 345 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 ZMIZ2Q8NF64 920 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 GADD45GIP1Q8TAE8 222 aaPredicted RBP4.36□□□□□ -1.71
MCF2-201ENST00000338585 BCL7CQ8WUZ0 217 aaPredicted RBP4.36□□□□□ -1.71
MCF2-201ENST00000338585 RXFP2Q8WXD0 754 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 MYLPFQ96A32 169 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 RPGRIP1Q96KN7 1286 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 FAM193BQ96PV7 902 aaPredicted RBP4.36□□□□□ -1.71
MCF2-201ENST00000338585 KRT12Q99456 494 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 PKMYT1Q99640 499 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 SMOQ99835 787 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 DUSP16Q9BY84 665 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 ADAM33Q9BZ11 813 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 GPR62Q9BZJ7 368 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 WDR35Q9P2L0 1181 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 KANSL3Q9P2N6 904 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 RNF14Q9UBS8 474 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 DMGDHQ9UI17 866 aaKnown RBP4.36□□□□□ -1.71
MCF2-201ENST00000338585 TMEM59LQ9UK28 342 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 CDH9Q9ULB4 789 aa4.36□□□□□ -1.71
MCF2-201ENST00000338585 MICAL3Q7RTP6 2002 aa4.35□□□□□ -1.71
MCF2-201ENST00000338585 ZSCAN5CA6NGD5 496 aaPredicted RBP4.35□□□□□ -1.71
MCF2-201ENST00000338585 C2CD4BA6NLJ0 364 aa4.35□□□□□ -1.71
MCF2-201ENST00000338585 XPO1O14980 1071 aaKnown RBP4.35□□□□□ -1.71
MCF2-201ENST00000338585 LRCH4O75427 683 aa4.35□□□□□ -1.71
MCF2-201ENST00000338585 TADA2AO75478 443 aa4.35□□□□□ -1.71
MCF2-201ENST00000338585 AP1G2O75843 785 aa4.35□□□□□ -1.71
MCF2-201ENST00000338585 FAM200BP0CF97 657 aa4.35□□□□□ -1.71
MCF2-201ENST00000338585 ACRP10323 421 aa4.35□□□□□ -1.71
MCF2-201ENST00000338585 H2AFXP16104 143 aaPredicted RBP4.35□□□□□ -1.71
MCF2-201ENST00000338585 NPR3P17342 541 aa4.35□□□□□ -1.71
MCF2-201ENST00000338585 IL1R2P27930 398 aa4.35□□□□□ -1.71
MCF2-201ENST00000338585 PCSK1P29120 753 aa4.35□□□□□ -1.71
MCF2-201ENST00000338585 MAN1A1P33908 653 aa4.35□□□□□ -1.71
MCF2-201ENST00000338585 PLA2G4AP47712 749 aa4.35□□□□□ -1.71
MCF2-201ENST00000338585 VSNL1P62760 191 aa4.35□□□□□ -1.71
MCF2-201ENST00000338585 DEFB103AP81534 67 aa4.35□□□□□ -1.71
MCF2-201ENST00000338585 ATP11AP98196 1134 aa4.35□□□□□ -1.71
MCF2-201ENST00000338585 SLC6A3Q01959 620 aa4.35□□□□□ -1.71
MCF2-201ENST00000338585 PLCB3Q01970 1234 aa4.35□□□□□ -1.71
MCF2-201ENST00000338585 TAP1Q03518 808 aa4.35□□□□□ -1.71
MCF2-201ENST00000338585 ADIGQ0VDE8 80 aa4.35□□□□□ -1.71
MCF2-201ENST00000338585 PIGHQ14442 188 aaPredicted RBP4.35□□□□□ -1.71
MCF2-201ENST00000338585 CDO1Q16878 200 aa4.35□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms