RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 SMG9Q9H0W8 520 aaKnown RBP16.8■□□□□ 0.28
CLN3-201ENST00000333496 MFSD1Q9H3U5 465 aa16.8■□□□□ 0.28
CLN3-201ENST00000333496 CISHQ9NSE2 258 aa16.8■□□□□ 0.28
CLN3-201ENST00000333496 TNFRSF10BO14763 440 aa16.79■□□□□ 0.28
CLN3-201ENST00000333496 DDX6P26196 483 aaKnown RBP eCLIP16.79■□□□□ 0.28
CLN3-201ENST00000333496 FCHO2Q0JRZ9 810 aa16.79■□□□□ 0.28
CLN3-201ENST00000333496 SLC44A4Q53GD3 710 aa16.79■□□□□ 0.28
CLN3-201ENST00000333496 MON1AQ86VX9 555 aa16.79■□□□□ 0.28
CLN3-201ENST00000333496 TMEM105Q8N8V8 129 aa16.79■□□□□ 0.28
CLN3-201ENST00000333496 FLCNQ8NFG4 579 aa16.79■□□□□ 0.28
CLN3-201ENST00000333496 MRPS31Q92665 395 aaKnown RBP16.79■□□□□ 0.28
CLN3-201ENST00000333496 E2F7Q96AV8 911 aa16.79■□□□□ 0.28
CLN3-201ENST00000333496 CYFIP2Q96F07 1278 aa16.79■□□□□ 0.28
CLN3-201ENST00000333496 SLC22A12Q96S37 553 aa16.79■□□□□ 0.28
CLN3-201ENST00000333496 HNRNPABQ99729 332 aaKnown RBP16.79■□□□□ 0.28
CLN3-201ENST00000333496 CSNK1G1Q9HCP0 422 aa16.79■□□□□ 0.28
CLN3-201ENST00000333496 KRT82Q9NSB4 513 aa16.79■□□□□ 0.28
CLN3-201ENST00000333496 ZMYM5Q9UJ78 669 aa16.79■□□□□ 0.28
CLN3-201ENST00000333496 CCL26Q9Y258 94 aa16.79■□□□□ 0.28
CLN3-201ENST00000333496 ATP8B3O60423 1300 aa16.78■□□□□ 0.28
CLN3-201ENST00000333496 SOBPA7XYQ1 873 aa16.78■□□□□ 0.28
CLN3-201ENST00000333496 ARNTLO00327 626 aa16.78■□□□□ 0.28
CLN3-201ENST00000333496 PI15O43692 258 aa16.78■□□□□ 0.28
CLN3-201ENST00000333496 AP1G2O75843 785 aa16.78■□□□□ 0.28
CLN3-201ENST00000333496 GDI1P31150 447 aa16.78■□□□□ 0.28
CLN3-201ENST00000333496 CLCN5P51795 746 aa16.78■□□□□ 0.28
CLN3-201ENST00000333496 PFKPQ01813 784 aa16.78■□□□□ 0.28
CLN3-201ENST00000333496 LRMPQ12912 555 aa16.78■□□□□ 0.28
CLN3-201ENST00000333496 CUL2Q13617 745 aa16.78■□□□□ 0.28
CLN3-201ENST00000333496 ASTLQ6HA08 431 aaPredicted RBP16.78■□□□□ 0.28
CLN3-201ENST00000333496 RBM43Q6ZSC3 357 aaKnown RBP16.78■□□□□ 0.28
CLN3-201ENST00000333496 NUP93Q8N1F7 819 aa16.78■□□□□ 0.28
CLN3-201ENST00000333496 BRD9Q9H8M2 597 aa16.78■□□□□ 0.28
CLN3-201ENST00000333496 DMAP1Q9NPF5 467 aaPredicted RBP16.78■□□□□ 0.28
CLN3-201ENST00000333496 OBP2AQ9NY56 170 aa16.78■□□□□ 0.28
CLN3-201ENST00000333496 UTP18Q9Y5J1 556 aaKnown RBP eCLIP16.78■□□□□ 0.28
CLN3-201ENST00000333496 C2orf78A6NCI8 922 aa16.78■□□□□ 0.28
CLN3-201ENST00000333496 SHISA7A6NL88 538 aa16.78■□□□□ 0.28
CLN3-201ENST00000333496 P4HA2O15460 535 aa16.78■□□□□ 0.28
CLN3-201ENST00000333496 FGFR1OPO95684 399 aaKnown RBP16.78■□□□□ 0.28
CLN3-201ENST00000333496 CCDC192P0DO97 292 aa16.78■□□□□ 0.28
CLN3-201ENST00000333496 ADORA2BP29275 332 aa16.78■□□□□ 0.28
CLN3-201ENST00000333496 RAD23BP54727 409 aa16.78■□□□□ 0.28
CLN3-201ENST00000333496 STARD6P59095 220 aa16.78■□□□□ 0.28
CLN3-201ENST00000333496 MLF2Q15773 248 aaPredicted RBP16.78■□□□□ 0.28
CLN3-201ENST00000333496 SKOR2Q2VWA4 1001 aaPredicted RBP16.78■□□□□ 0.28
CLN3-201ENST00000333496 PPP1R26Q5T8A7 1209 aaPredicted RBP16.78■□□□□ 0.28
CLN3-201ENST00000333496 UBR7Q8N806 425 aa16.78■□□□□ 0.28
CLN3-201ENST00000333496 SLC4A11Q8NBS3 891 aa16.78■□□□□ 0.28
CLN3-201ENST00000333496 SCAMP5Q8TAC9 235 aa16.78■□□□□ 0.28
CLN3-201ENST00000333496 RIN3Q8TB24 985 aa16.78■□□□□ 0.28
CLN3-201ENST00000333496 USP13Q92995 863 aaPredicted RBP16.78■□□□□ 0.28
CLN3-201ENST00000333496 CNOT6LQ96LI5 555 aaKnown RBP16.78■□□□□ 0.28
CLN3-201ENST00000333496 CYP2S1Q96SQ9 504 aa16.78■□□□□ 0.28
CLN3-201ENST00000333496 FAM124BQ9H5Z6 455 aaPredicted RBP16.78■□□□□ 0.28
CLN3-201ENST00000333496 TBC1D17Q9HA65 648 aa16.78■□□□□ 0.28
CLN3-201ENST00000333496 HEBP1Q9NRV9 189 aa16.78■□□□□ 0.28
CLN3-201ENST00000333496 IL37Q9NZH6 218 aa16.78■□□□□ 0.28
CLN3-201ENST00000333496 GCNT4Q9P109 453 aa16.78■□□□□ 0.28
CLN3-201ENST00000333496 HCN4Q9Y3Q4 1203 aa16.78■□□□□ 0.28
CLN3-201ENST00000333496 AFPP02771 609 aaKnown RBP16.77■□□□□ 0.27
CLN3-201ENST00000333496 AOC1P19801 751 aa16.77■□□□□ 0.27
CLN3-201ENST00000333496 AVPR1AP37288 418 aa16.77■□□□□ 0.27
CLN3-201ENST00000333496 MAP3K7CLP57077 242 aa16.77■□□□□ 0.27
CLN3-201ENST00000333496 IFRD2Q12894 506 aaPredicted RBP16.77■□□□□ 0.27
CLN3-201ENST00000333496 TAF10Q12962 218 aa16.77■□□□□ 0.27
CLN3-201ENST00000333496 PHLDB3Q6NSJ2 640 aa16.77■□□□□ 0.27
CLN3-201ENST00000333496 CLEC20AQ6ZU45 233 aa16.77■□□□□ 0.27
CLN3-201ENST00000333496 TTC39CQ8N584 583 aa16.77■□□□□ 0.27
CLN3-201ENST00000333496 CELF5Q8N6W0 485 aaKnown RBP16.77■□□□□ 0.27
CLN3-201ENST00000333496 BPIFB1Q8TDL5 484 aa16.77■□□□□ 0.27
CLN3-201ENST00000333496 DNASE1L2Q92874 299 aa16.77■□□□□ 0.27
CLN3-201ENST00000333496 IRF7Q92985 503 aa16.77■□□□□ 0.27
CLN3-201ENST00000333496 TMEM176AQ96HP8 235 aa16.77■□□□□ 0.27
CLN3-201ENST00000333496 DDX23Q9BUQ8 820 aaKnown RBP16.77■□□□□ 0.27
CLN3-201ENST00000333496 TRPC7Q9HCX4 862 aa16.77■□□□□ 0.27
CLN3-201ENST00000333496 TRPV5Q9NQA5 729 aa16.77■□□□□ 0.27
CLN3-201ENST00000333496 TDP1Q9NUW8 608 aa16.77■□□□□ 0.27
CLN3-201ENST00000333496 EHD2Q9NZN4 543 aa16.77■□□□□ 0.27
CLN3-201ENST00000333496 F5P12259 2224 aa16.76■□□□□ 0.27
CLN3-201ENST00000333496 ZNF840PA6NDX5 716 aa16.76■□□□□ 0.27
CLN3-201ENST00000333496 HHLA1C9JL84 531 aa16.76■□□□□ 0.27
CLN3-201ENST00000333496 DPYSL4O14531 572 aa16.76■□□□□ 0.27
CLN3-201ENST00000333496 ZNF263O14978 683 aa16.76■□□□□ 0.27
CLN3-201ENST00000333496 CHADO15335 359 aa16.76■□□□□ 0.27
CLN3-201ENST00000333496 SLC5A3P53794 718 aa16.76■□□□□ 0.27
CLN3-201ENST00000333496 ARL14EPQ8N8R7 260 aaPredicted RBP16.76■□□□□ 0.27
CLN3-201ENST00000333496 EHBP1Q8NDI1 1231 aa16.76■□□□□ 0.27
CLN3-201ENST00000333496 ZFYVE19Q96K21 471 aa16.76■□□□□ 0.27
CLN3-201ENST00000333496 HEXIM2Q96MH2 286 aaKnown RBP16.76■□□□□ 0.27
CLN3-201ENST00000333496 TRPM5Q9NZQ8 1165 aa16.76■□□□□ 0.27
CLN3-201ENST00000333496 FAM92AA1XBS5 289 aa16.75■□□□□ 0.27
CLN3-201ENST00000333496 STK25O00506 426 aa16.75■□□□□ 0.27
CLN3-201ENST00000333496 RTN3O95197 1032 aaPredicted RBP16.75■□□□□ 0.27
CLN3-201ENST00000333496 FAM200BP0CF97 657 aa16.75■□□□□ 0.27
CLN3-201ENST00000333496 CD72P21854 359 aa16.75■□□□□ 0.27
CLN3-201ENST00000333496 TBXAS1P24557 533 aaPredicted RBP16.75■□□□□ 0.27
CLN3-201ENST00000333496 YWHAQP27348 245 aa16.75■□□□□ 0.27
CLN3-201ENST00000333496 ERCC5P28715 1186 aaPredicted RBP16.75■□□□□ 0.27
CLN3-201ENST00000333496 PRKCQQ04759 706 aa16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms