RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 FGFR3P22607 806 aa10.57□□□□□ -0.72
HMGB3-201ENST00000325307 BDNFP23560 247 aa10.57□□□□□ -0.72
HMGB3-201ENST00000325307 CLCN6P51797 869 aa10.57□□□□□ -0.72
HMGB3-201ENST00000325307 MESDQ14696 234 aa10.57□□□□□ -0.72
HMGB3-201ENST00000325307 PRSS55Q6UWB4 352 aaPredicted RBP10.57□□□□□ -0.72
HMGB3-201ENST00000325307 LRRTM3Q86VH5 581 aa10.57□□□□□ -0.72
HMGB3-201ENST00000325307 NAPGQ99747 312 aaPredicted RBP10.57□□□□□ -0.72
HMGB3-201ENST00000325307 SELENOOQ9BVL4 669 aa10.57□□□□□ -0.72
HMGB3-201ENST00000325307 DUSP16Q9BY84 665 aa10.57□□□□□ -0.72
HMGB3-201ENST00000325307 MIS12Q9H081 205 aa10.57□□□□□ -0.72
HMGB3-201ENST00000325307 AVENQ9NQS1 362 aaPredicted RBP10.57□□□□□ -0.72
HMGB3-201ENST00000325307 ABI2Q9NYB9 513 aaPredicted RBP10.57□□□□□ -0.72
HMGB3-201ENST00000325307 CDC23Q9UJX2 597 aa10.57□□□□□ -0.72
HMGB3-201ENST00000325307 GJB6O95452 261 aa10.57□□□□□ -0.72
HMGB3-201ENST00000325307 ATP1A1P05023 1023 aaKnown RBP10.57□□□□□ -0.72
HMGB3-201ENST00000325307 LCP1P13796 627 aa10.57□□□□□ -0.72
HMGB3-201ENST00000325307 PLCB3Q01970 1234 aa10.57□□□□□ -0.72
HMGB3-201ENST00000325307 PTP4A2Q12974 167 aa10.57□□□□□ -0.72
HMGB3-201ENST00000325307 C4orf50Q6ZRC1 276 aa10.57□□□□□ -0.72
HMGB3-201ENST00000325307 ANKS3Q6ZW76 656 aa10.57□□□□□ -0.72
HMGB3-201ENST00000325307 SLC39A11Q8N1S5 342 aa10.57□□□□□ -0.72
HMGB3-201ENST00000325307 SMARCD1Q96GM5 515 aa10.57□□□□□ -0.72
HMGB3-201ENST00000325307 BTBD6Q96KE9 485 aa10.57□□□□□ -0.72
HMGB3-201ENST00000325307 RNPC3Q96LT9 517 aaKnown RBP10.57□□□□□ -0.72
HMGB3-201ENST00000325307 PGLYRP2Q96PD5 576 aa10.57□□□□□ -0.72
HMGB3-201ENST00000325307 TMLHEQ9NVH6 421 aa10.57□□□□□ -0.72
HMGB3-201ENST00000325307 FEZ2Q9UHY8 353 aaPredicted RBP10.57□□□□□ -0.72
HMGB3-201ENST00000325307 CEP290O15078 2479 aa10.57□□□□□ -0.72
HMGB3-201ENST00000325307 GRID2IPA4D2P6 1211 aa10.56□□□□□ -0.72
HMGB3-201ENST00000325307 BUB1BO60566 1050 aaPredicted RBP10.56□□□□□ -0.72
HMGB3-201ENST00000325307 PPM1AP35813 382 aa10.56□□□□□ -0.72
HMGB3-201ENST00000325307 MAGEA10P43363 369 aaPredicted RBP10.56□□□□□ -0.72
HMGB3-201ENST00000325307 RNASE9P60153 205 aaKnown RBP10.56□□□□□ -0.72
HMGB3-201ENST00000325307 MAMLD1Q13495 774 aa10.56□□□□□ -0.72
HMGB3-201ENST00000325307 PKDCCQ504Y2 493 aa10.56□□□□□ -0.72
HMGB3-201ENST00000325307 PAQR9Q6ZVX9 377 aa10.56□□□□□ -0.72
HMGB3-201ENST00000325307 MNS1Q8NEH6 495 aa10.56□□□□□ -0.72
HMGB3-201ENST00000325307 SLC35F5Q8WV83 523 aa10.56□□□□□ -0.72
HMGB3-201ENST00000325307 OR6C75A6NL08 312 aa10.56□□□□□ -0.72
HMGB3-201ENST00000325307 MYO1FO00160 1098 aa10.56□□□□□ -0.72
HMGB3-201ENST00000325307 CSPG5O95196 566 aa10.56□□□□□ -0.72
HMGB3-201ENST00000325307 RABGGTBP53611 331 aa10.56□□□□□ -0.72
HMGB3-201ENST00000325307 HTRA4P83105 476 aaPredicted RBP10.56□□□□□ -0.72
HMGB3-201ENST00000325307 KRT17Q04695 432 aa10.56□□□□□ -0.72
HMGB3-201ENST00000325307 FAM102AQ5T9C2 384 aaPredicted RBP10.56□□□□□ -0.72
HMGB3-201ENST00000325307 FAM171BQ6P995 826 aa10.56□□□□□ -0.72
HMGB3-201ENST00000325307 PIGZQ86VD9 579 aa10.56□□□□□ -0.72
HMGB3-201ENST00000325307 SYCE1Q8N0S2 351 aa10.56□□□□□ -0.72
HMGB3-201ENST00000325307 PHOSPHO2Q8TCD6 241 aa10.56□□□□□ -0.72
HMGB3-201ENST00000325307 MCEEQ96PE7 176 aa10.56□□□□□ -0.72
HMGB3-201ENST00000325307 LRRC4Q9HBW1 653 aa10.56□□□□□ -0.72
HMGB3-201ENST00000325307 HYOU1Q9Y4L1 999 aa10.56□□□□□ -0.72
HMGB3-201ENST00000325307 PCDHGC5Q9Y5F6 944 aa10.56□□□□□ -0.72
HMGB3-201ENST00000325307 CARNS1A5YM72 827 aa10.56□□□□□ -0.72
HMGB3-201ENST00000325307 XPO1O14980 1071 aaKnown RBP10.56□□□□□ -0.72
HMGB3-201ENST00000325307 BEST1O76090 585 aa10.56□□□□□ -0.72
HMGB3-201ENST00000325307 DNAJB2P25686 324 aa10.56□□□□□ -0.72
HMGB3-201ENST00000325307 C9orf50Q5SZB4 431 aa10.56□□□□□ -0.72
HMGB3-201ENST00000325307 CLEC20AQ6ZU45 233 aa10.56□□□□□ -0.72
HMGB3-201ENST00000325307 PEX26Q7Z412 305 aa10.56□□□□□ -0.72
HMGB3-201ENST00000325307 SCN4BQ8IWT1 228 aa10.56□□□□□ -0.72
HMGB3-201ENST00000325307 SCUBE3Q8IX30 993 aa10.56□□□□□ -0.72
HMGB3-201ENST00000325307 SGSM3Q96HU1 749 aa10.56□□□□□ -0.72
HMGB3-201ENST00000325307 KCNK16Q96T55 309 aa10.56□□□□□ -0.72
HMGB3-201ENST00000325307 ZCWPW1Q9H0M4 648 aa10.56□□□□□ -0.72
HMGB3-201ENST00000325307 ANKZF1Q9H8Y5 726 aa10.56□□□□□ -0.72
HMGB3-201ENST00000325307 WDR35Q9P2L0 1181 aa10.56□□□□□ -0.72
HMGB3-201ENST00000325307 KRT3P12035 628 aa10.55□□□□□ -0.72
HMGB3-201ENST00000325307 RPL17P18621 184 aaKnown RBP10.55□□□□□ -0.72
HMGB3-201ENST00000325307 GRIK1P39086 918 aa10.55□□□□□ -0.72
HMGB3-201ENST00000325307 PSMD5Q16401 504 aa10.55□□□□□ -0.72
HMGB3-201ENST00000325307 NFE2Q16621 373 aaPredicted RBP10.55□□□□□ -0.72
HMGB3-201ENST00000325307 PLEKHA7Q6IQ23 1121 aa10.55□□□□□ -0.72
HMGB3-201ENST00000325307 XYLT1Q86Y38 959 aa10.55□□□□□ -0.72
HMGB3-201ENST00000325307 SIX6OS1Q8N1H7 587 aa10.55□□□□□ -0.72
HMGB3-201ENST00000325307 C3orf20Q8ND61 904 aa10.55□□□□□ -0.72
HMGB3-201ENST00000325307 UBXN4Q92575 508 aa10.55□□□□□ -0.72
HMGB3-201ENST00000325307 UBXN6Q9BZV1 441 aa10.55□□□□□ -0.72
HMGB3-201ENST00000325307 TRIM7Q9C029 511 aa10.55□□□□□ -0.72
HMGB3-201ENST00000325307 METTL5Q9NRN9 209 aaKnown RBP10.55□□□□□ -0.72
HMGB3-201ENST00000325307 JRKLQ9Y4A0 524 aa10.55□□□□□ -0.72
HMGB3-201ENST00000325307 CDY1Q9Y6F8 540 aa10.55□□□□□ -0.72
HMGB3-201ENST00000325307 LCHNA4D1U4 455 aa10.55□□□□□ -0.72
HMGB3-201ENST00000325307 NCK2O43639 380 aa10.55□□□□□ -0.72
HMGB3-201ENST00000325307 SOD2P04179 222 aa10.55□□□□□ -0.72
HMGB3-201ENST00000325307 URODP06132 367 aa10.55□□□□□ -0.72
HMGB3-201ENST00000325307 CTNNB1P35222 781 aa10.55□□□□□ -0.72
HMGB3-201ENST00000325307 SSR1P43307 286 aaKnown RBP10.55□□□□□ -0.72
HMGB3-201ENST00000325307 ACADSBP45954 432 aa10.55□□□□□ -0.72
HMGB3-201ENST00000325307 GLUD2P49448 558 aa10.55□□□□□ -0.72
HMGB3-201ENST00000325307 ZNF268Q14587 947 aaPredicted RBP10.55□□□□□ -0.72
HMGB3-201ENST00000325307 FAM183BPQ6ZVS7 135 aa10.55□□□□□ -0.72
HMGB3-201ENST00000325307 VPS52Q8N1B4 723 aa10.55□□□□□ -0.72
HMGB3-201ENST00000325307 FEZF2Q8TBJ5 459 aa10.55□□□□□ -0.72
HMGB3-201ENST00000325307 STK32AQ8WU08 396 aa10.55□□□□□ -0.72
HMGB3-201ENST00000325307 PSMB7Q99436 277 aa10.55□□□□□ -0.72
HMGB3-201ENST00000325307 SMOQ99835 787 aa10.55□□□□□ -0.72
HMGB3-201ENST00000325307 VN1R3Q9BXE9 311 aa10.55□□□□□ -0.72
HMGB3-201ENST00000325307 SLC4A5Q9BY07 1137 aa10.55□□□□□ -0.72
HMGB3-201ENST00000325307 PACSIN2Q9UNF0 486 aaPredicted RBP10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms