RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 TTC7BQ86TV6 843 aa22.31■■□□□ 1.16
TRIM28-201ENST00000253024 DENND1AQ8TEH3 1009 aa22.31■■□□□ 1.16
TRIM28-201ENST00000253024 PGLYRP2Q96PD5 576 aa22.31■■□□□ 1.16
TRIM28-201ENST00000253024 RNPEPQ9H4A4 650 aa22.31■■□□□ 1.16
TRIM28-201ENST00000253024 RAB6BQ9NRW1 208 aa22.31■■□□□ 1.16
TRIM28-201ENST00000253024 SIX4Q9UIU6 781 aa22.31■■□□□ 1.16
TRIM28-201ENST00000253024 CPSF3Q9UKF6 684 aaKnown RBP22.31■■□□□ 1.16
TRIM28-201ENST00000253024 USP18Q9UMW8 372 aa22.31■■□□□ 1.16
TRIM28-201ENST00000253024 MAGED2Q9UNF1 606 aaPredicted RBP22.31■■□□□ 1.16
TRIM28-201ENST00000253024 POLR2BP30876 1174 aaKnown RBP22.31■■□□□ 1.16
TRIM28-201ENST00000253024 ARL4CP56559 192 aa22.31■■□□□ 1.16
TRIM28-201ENST00000253024 ZNF268Q14587 947 aaPredicted RBP22.31■■□□□ 1.16
TRIM28-201ENST00000253024 NLRP9Q7RTR0 991 aa22.31■■□□□ 1.16
TRIM28-201ENST00000253024 SLC35B2Q8TB61 432 aa22.31■■□□□ 1.16
TRIM28-201ENST00000253024 SERAC1Q96JX3 654 aa22.31■■□□□ 1.16
TRIM28-201ENST00000253024 B3GNT5Q9BYG0 378 aa22.31■■□□□ 1.16
TRIM28-201ENST00000253024 PCDH9Q9HC56 1237 aa22.31■■□□□ 1.16
TRIM28-201ENST00000253024 ARHGEF3Q9NR81 526 aa22.31■■□□□ 1.16
TRIM28-201ENST00000253024 SYNJ2BP-COX16A0A087WUM0 186 aa22.3■■□□□ 1.16
TRIM28-201ENST00000253024 MICAL2O94851 1124 aa22.3■■□□□ 1.16
TRIM28-201ENST00000253024 PYGBP11216 843 aa22.3■■□□□ 1.16
TRIM28-201ENST00000253024 GM2AP17900 193 aa22.3■■□□□ 1.16
TRIM28-201ENST00000253024 BGNP21810 368 aa22.3■■□□□ 1.16
TRIM28-201ENST00000253024 RAD23BP54727 409 aa22.3■■□□□ 1.16
TRIM28-201ENST00000253024 MAP1SQ66K74 1059 aaPredicted RBP22.3■■□□□ 1.16
TRIM28-201ENST00000253024 TRAF3IP1Q8TDR0 691 aaPredicted RBP22.3■■□□□ 1.16
TRIM28-201ENST00000253024 COX16Q9P0S2 106 aa22.3■■□□□ 1.16
TRIM28-201ENST00000253024 IKBKGQ9Y6K9 419 aa22.3■■□□□ 1.16
TRIM28-201ENST00000253024 EDF1O60869 148 aaKnown RBP22.3■■□□□ 1.16
TRIM28-201ENST00000253024 MAFO75444 373 aaPredicted RBP22.3■■□□□ 1.16
TRIM28-201ENST00000253024 ZBTB16Q05516 673 aa22.3■■□□□ 1.16
TRIM28-201ENST00000253024 RFWD3Q6PCD5 774 aa22.3■■□□□ 1.16
TRIM28-201ENST00000253024 FAF2Q96CS3 445 aa22.3■■□□□ 1.16
TRIM28-201ENST00000253024 CEP41Q9BYV8 373 aa22.3■■□□□ 1.16
TRIM28-201ENST00000253024 RPF1Q9H9Y2 349 aaKnown RBP22.3■■□□□ 1.16
TRIM28-201ENST00000253024 SLC17A6Q9P2U8 582 aa22.3■■□□□ 1.16
TRIM28-201ENST00000253024 ADM5C9JUS6 153 aa22.29■■□□□ 1.16
TRIM28-201ENST00000253024 E5RJQ4 531 aa22.29■■□□□ 1.16
TRIM28-201ENST00000253024 KCNN4O15554 427 aa22.29■■□□□ 1.16
TRIM28-201ENST00000253024 RNF8O76064 485 aa22.29■■□□□ 1.16
TRIM28-201ENST00000253024 PHKA2P46019 1235 aa22.29■■□□□ 1.16
TRIM28-201ENST00000253024 TARBP2Q15633 366 aaKnown RBP22.29■■□□□ 1.16
TRIM28-201ENST00000253024 HADHQ16836 314 aaKnown RBP22.29■■□□□ 1.16
TRIM28-201ENST00000253024 GLRA4Q5JXX5 417 aa22.29■■□□□ 1.16
TRIM28-201ENST00000253024 PPP1R15BQ5SWA1 713 aa22.29■■□□□ 1.16
TRIM28-201ENST00000253024 TRNP1Q6NT89 227 aa22.29■■□□□ 1.16
TRIM28-201ENST00000253024 XYLT1Q86Y38 959 aa22.29■■□□□ 1.16
TRIM28-201ENST00000253024 CCDC125Q86Z20 511 aa22.29■■□□□ 1.16
TRIM28-201ENST00000253024 PPIL6Q8IXY8 311 aa22.29■■□□□ 1.16
TRIM28-201ENST00000253024 PDIK1LQ8N165 341 aa22.29■■□□□ 1.16
TRIM28-201ENST00000253024 CDT1Q9H211 546 aa22.29■■□□□ 1.16
TRIM28-201ENST00000253024 ZFP69BQ9UJL9 534 aa22.29■■□□□ 1.16
TRIM28-201ENST00000253024 MAD1L1Q9Y6D9 718 aa22.29■■□□□ 1.16
TRIM28-201ENST00000253024 EVPLQ92817 2033 aa22.29■■□□□ 1.16
TRIM28-201ENST00000253024 A0A087WZ62 844 aa22.29■■□□□ 1.16
TRIM28-201ENST00000253024 MCF2LO15068 1137 aa22.29■■□□□ 1.16
TRIM28-201ENST00000253024 TCEA3O75764 348 aa22.29■■□□□ 1.16
TRIM28-201ENST00000253024 APRTP07741 180 aa22.29■■□□□ 1.16
TRIM28-201ENST00000253024 PDGFRAP16234 1089 aa22.29■■□□□ 1.16
TRIM28-201ENST00000253024 TFE3P19532 575 aaPredicted RBP22.29■■□□□ 1.16
TRIM28-201ENST00000253024 HMGB2P26583 209 aaKnown RBP22.29■■□□□ 1.16
TRIM28-201ENST00000253024 GMPRP36959 345 aa22.29■■□□□ 1.16
TRIM28-201ENST00000253024 PTK7Q13308 1070 aa22.29■■□□□ 1.16
TRIM28-201ENST00000253024 Q3C1V9 767 aa22.29■■□□□ 1.16
TRIM28-201ENST00000253024 FAM160B1Q5W0V3 765 aa22.29■■□□□ 1.16
TRIM28-201ENST00000253024 POTEAQ6S8J7 498 aa22.29■■□□□ 1.16
TRIM28-201ENST00000253024 C7orf31Q8N865 590 aa22.29■■□□□ 1.16
TRIM28-201ENST00000253024 CCDC110Q8TBZ0 833 aa22.29■■□□□ 1.16
TRIM28-201ENST00000253024 ZNF570Q96NI8 536 aa22.29■■□□□ 1.16
TRIM28-201ENST00000253024 FDXACB1Q9BRP7 624 aaPredicted RBP22.29■■□□□ 1.16
TRIM28-201ENST00000253024 TBC1D10AQ9BXI6 508 aa22.29■■□□□ 1.16
TRIM28-201ENST00000253024 TXNRD2Q9NNW7 524 aa22.29■■□□□ 1.16
TRIM28-201ENST00000253024 AKT3Q9Y243 479 aa22.29■■□□□ 1.16
TRIM28-201ENST00000253024 MYO18AQ92614 2054 aaKnown RBP22.29■■□□□ 1.16
TRIM28-201ENST00000253024 IRF6O14896 467 aa22.29■■□□□ 1.16
TRIM28-201ENST00000253024 NR1H3Q13133 447 aa22.29■■□□□ 1.16
TRIM28-201ENST00000253024 TTLL12Q14166 644 aaPredicted RBP22.29■■□□□ 1.16
TRIM28-201ENST00000253024 PDK4Q16654 411 aa22.29■■□□□ 1.16
TRIM28-201ENST00000253024 SCUBE3Q8IX30 993 aa22.29■■□□□ 1.16
TRIM28-201ENST00000253024 IL1RAPL1Q9NZN1 696 aa22.29■■□□□ 1.16
TRIM28-201ENST00000253024 CYB561D2O14569 222 aa22.28■■□□□ 1.16
TRIM28-201ENST00000253024 TYROBPO43914 113 aa22.28■■□□□ 1.16
TRIM28-201ENST00000253024 LPXNO60711 386 aa22.28■■□□□ 1.16
TRIM28-201ENST00000253024 MT-ND3P03897 115 aa22.28■■□□□ 1.16
TRIM28-201ENST00000253024 ITGAVP06756 1048 aa22.28■■□□□ 1.16
TRIM28-201ENST00000253024 T-ENOLP0DO92 83 aa22.28■■□□□ 1.16
TRIM28-201ENST00000253024 NBPF20Q3BBV1 942 aa22.28■■□□□ 1.16
TRIM28-201ENST00000253024 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP22.28■■□□□ 1.16
TRIM28-201ENST00000253024 ATP11CQ8NB49 1132 aa22.28■■□□□ 1.16
TRIM28-201ENST00000253024 SLC4A11Q8NBS3 891 aa22.28■■□□□ 1.16
TRIM28-201ENST00000253024 NIFKQ9BYG3 293 aaKnown RBP22.28■■□□□ 1.16
TRIM28-201ENST00000253024 CNTN6Q9UQ52 1028 aa22.28■■□□□ 1.16
TRIM28-201ENST00000253024 C15orf41Q9Y2V0 281 aa22.28■■□□□ 1.16
TRIM28-201ENST00000253024 USH1CQ9Y6N9 552 aa22.28■■□□□ 1.16
TRIM28-201ENST00000253024 ATG7O95352 703 aa22.28■■□□□ 1.16
TRIM28-201ENST00000253024 PAX7P23759 505 aa22.28■■□□□ 1.16
TRIM28-201ENST00000253024 CRADDP78560 199 aa22.28■■□□□ 1.16
TRIM28-201ENST00000253024 MKRN3Q13064 507 aaKnown RBP22.28■■□□□ 1.16
TRIM28-201ENST00000253024 CA9Q16790 459 aa22.28■■□□□ 1.16
TRIM28-201ENST00000253024 ASRGL1Q7L266 308 aa22.28■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms