RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 ITGALP20701 1170 aa0.8□□□□□ -2.28
VPS35-212ENST00000640313 TBXAS1P24557 533 aaPredicted RBP0.8□□□□□ -2.28
VPS35-212ENST00000640313 PDE1AP54750 535 aa0.8□□□□□ -2.28
VPS35-212ENST00000640313 B4GALNT1Q00973 533 aa0.8□□□□□ -2.28
VPS35-212ENST00000640313 EGR4Q05215 589 aa0.8□□□□□ -2.28
VPS35-212ENST00000640313 RBM39Q14498 530 aaKnown RBP0.8□□□□□ -2.28
VPS35-212ENST00000640313 ICE2Q659A1 982 aa0.8□□□□□ -2.28
VPS35-212ENST00000640313 TAF2Q6P1X5 1199 aa0.8□□□□□ -2.28
VPS35-212ENST00000640313 SLC30A10Q6XR72 485 aa0.8□□□□□ -2.28
VPS35-212ENST00000640313 RTL10Q7L3V2 364 aa0.8□□□□□ -2.28
VPS35-212ENST00000640313 BCDIN3DQ7Z5W3 292 aaKnown RBP0.8□□□□□ -2.28
VPS35-212ENST00000640313 C11orf74Q86VG3 221 aa0.8□□□□□ -2.28
VPS35-212ENST00000640313 COL23A1Q86Y22 540 aaPredicted RBP0.8□□□□□ -2.28
VPS35-212ENST00000640313 PDSS2Q86YH6 399 aa0.8□□□□□ -2.28
VPS35-212ENST00000640313 LRRC71Q8N4P6 559 aa0.8□□□□□ -2.28
VPS35-212ENST00000640313 AOPEPQ8N6M6 819 aa0.8□□□□□ -2.28
VPS35-212ENST00000640313 PSD4Q8NDX1 1056 aa0.8□□□□□ -2.28
VPS35-212ENST00000640313 WIPF2Q8TF74 440 aaPredicted RBP0.8□□□□□ -2.28
VPS35-212ENST00000640313 ASB5Q8WWX0 329 aa0.8□□□□□ -2.28
VPS35-212ENST00000640313 SLC5A5Q92911 643 aa0.8□□□□□ -2.28
VPS35-212ENST00000640313 LENG8Q96PV6 779 aaPredicted RBP0.8□□□□□ -2.28
VPS35-212ENST00000640313 PACSIN1Q9BY11 444 aa0.8□□□□□ -2.28
VPS35-212ENST00000640313 ACE2Q9BYF1 805 aaPredicted RBP0.8□□□□□ -2.28
VPS35-212ENST00000640313 CIPCQ9C0C6 399 aa0.8□□□□□ -2.28
VPS35-212ENST00000640313 DMRT3Q9NQL9 472 aa0.8□□□□□ -2.28
VPS35-212ENST00000640313 ASIC5Q9NY37 505 aa0.8□□□□□ -2.28
VPS35-212ENST00000640313 SNTG2Q9NY99 539 aa0.8□□□□□ -2.28
VPS35-212ENST00000640313 TFCP2L1Q9NZI6 479 aa0.8□□□□□ -2.28
VPS35-212ENST00000640313 WNT16Q9UBV4 365 aa0.8□□□□□ -2.28
VPS35-212ENST00000640313 SLC45A2Q9UMX9 530 aa0.8□□□□□ -2.28
VPS35-212ENST00000640313 LIMCH1Q9UPQ0 1083 aa0.8□□□□□ -2.28
VPS35-212ENST00000640313 TTBK1Q5TCY1 1321 aaPredicted RBP0.8□□□□□ -2.28
VPS35-212ENST00000640313 CTIFO43310 598 aaKnown RBP0.79□□□□□ -2.28
VPS35-212ENST00000640313 KPNA6O60684 536 aa0.79□□□□□ -2.28
VPS35-212ENST00000640313 RNF8O76064 485 aa0.79□□□□□ -2.28
VPS35-212ENST00000640313 EPN2O95208 641 aa0.79□□□□□ -2.28
VPS35-212ENST00000640313 FKBP9O95302 570 aa0.79□□□□□ -2.28
VPS35-212ENST00000640313 SYF2O95926 243 aaKnown RBP0.79□□□□□ -2.28
VPS35-212ENST00000640313 CHEK2O96017 543 aa0.79□□□□□ -2.28
VPS35-212ENST00000640313 LDLRP01130 860 aa0.79□□□□□ -2.28
VPS35-212ENST00000640313 PRKCBP05771 671 aa0.79□□□□□ -2.28
VPS35-212ENST00000640313 FESP07332 822 aa0.79□□□□□ -2.28
VPS35-212ENST00000640313 MYCLP12524 364 aaPredicted RBP0.79□□□□□ -2.28
VPS35-212ENST00000640313 HOXB2P14652 356 aa0.79□□□□□ -2.28
VPS35-212ENST00000640313 GM2AP17900 193 aa0.79□□□□□ -2.28
VPS35-212ENST00000640313 IL6STP40189 918 aaPredicted RBP0.79□□□□□ -2.28
VPS35-212ENST00000640313 MLH1P40692 756 aa0.79□□□□□ -2.28
VPS35-212ENST00000640313 ADCYAP1R1P41586 468 aa0.79□□□□□ -2.28
VPS35-212ENST00000640313 GCLCP48506 637 aaPredicted RBP0.79□□□□□ -2.28
VPS35-212ENST00000640313 POLD2P49005 469 aa0.79□□□□□ -2.28
VPS35-212ENST00000640313 ALDH7A1P49419 539 aaKnown RBP0.79□□□□□ -2.28
VPS35-212ENST00000640313 ENTPD1P49961 510 aa0.79□□□□□ -2.28
VPS35-212ENST00000640313 TOB1P50616 345 aaPredicted RBP0.79□□□□□ -2.28
VPS35-212ENST00000640313 ALDH5A1P51649 535 aaPredicted RBP0.79□□□□□ -2.28
VPS35-212ENST00000640313 CLCN2P51788 898 aa0.79□□□□□ -2.28
VPS35-212ENST00000640313 NEK4P51957 841 aa0.79□□□□□ -2.28
VPS35-212ENST00000640313 DSCR9P59020 149 aa0.79□□□□□ -2.28
VPS35-212ENST00000640313 ERVFC1-1P60608 527 aa0.79□□□□□ -2.28
VPS35-212ENST00000640313 CCT2P78371 535 aaKnown RBP0.79□□□□□ -2.28
VPS35-212ENST00000640313 HSF1Q00613 529 aa0.79□□□□□ -2.28
VPS35-212ENST00000640313 POU5F1BQ06416 359 aa0.79□□□□□ -2.28
VPS35-212ENST00000640313 HABP2Q14520 560 aaPredicted RBP0.79□□□□□ -2.28
VPS35-212ENST00000640313 SART3Q15020 963 aaKnown RBP0.79□□□□□ -2.28
VPS35-212ENST00000640313 PRTGQ2VWP7 1150 aa0.79□□□□□ -2.28
VPS35-212ENST00000640313 ZNF750Q32MQ0 723 aa0.79□□□□□ -2.28
VPS35-212ENST00000640313 SLC9C1Q4G0N8 1177 aa0.79□□□□□ -2.28
VPS35-212ENST00000640313 DALRD3Q5D0E6 543 aaKnown RBP0.79□□□□□ -2.28
VPS35-212ENST00000640313 RNASE12Q5GAN4 147 aaKnown RBP0.79□□□□□ -2.28
VPS35-212ENST00000640313 TMEM63BQ5T3F8 832 aa0.79□□□□□ -2.28
VPS35-212ENST00000640313 TMTC4Q5T4D3 741 aa0.79□□□□□ -2.28
VPS35-212ENST00000640313 LCE3EQ5T5B0 92 aa0.79□□□□□ -2.28
VPS35-212ENST00000640313 ADAM5Q6NVV9 412 aa0.79□□□□□ -2.28
VPS35-212ENST00000640313 FKBP9P1Q75LS8 142 aa0.79□□□□□ -2.28
VPS35-212ENST00000640313 B4GALNT4Q76KP1 1039 aa0.79□□□□□ -2.28
VPS35-212ENST00000640313 MYPOPQ86VE0 399 aaPredicted RBP0.79□□□□□ -2.28
VPS35-212ENST00000640313 OR2I1PQ8NGU4 316 aa0.79□□□□□ -2.28
VPS35-212ENST00000640313 IFI44Q8TCB0 444 aa0.79□□□□□ -2.28
VPS35-212ENST00000640313 ELP5Q8TE02 316 aa0.79□□□□□ -2.28
VPS35-212ENST00000640313 MKL1Q969V6 931 aa0.79□□□□□ -2.28
VPS35-212ENST00000640313 CCDC17Q96LX7 622 aa0.79□□□□□ -2.28
VPS35-212ENST00000640313 CNPPD1Q9BV87 410 aa0.79□□□□□ -2.28
VPS35-212ENST00000640313 EGLN1Q9GZT9 426 aa0.79□□□□□ -2.28
VPS35-212ENST00000640313 EMC7Q9NPA0 242 aa0.79□□□□□ -2.28
VPS35-212ENST00000640313 TOPORSQ9NS56 1045 aaPredicted RBP0.79□□□□□ -2.28
VPS35-212ENST00000640313 GAR1Q9NY12 217 aaKnown RBP0.79□□□□□ -2.28
VPS35-212ENST00000640313 ZBTB21Q9ULJ3 1066 aa0.79□□□□□ -2.28
VPS35-212ENST00000640313 RAD54BQ9Y620 910 aa0.79□□□□□ -2.28
VPS35-212ENST00000640313 SMAD5-AS1Q9Y6J3 95 aa0.79□□□□□ -2.28
VPS35-212ENST00000640313 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP0.78□□□□□ -2.28
VPS35-212ENST00000640313 A1L4Q6 167 aa0.78□□□□□ -2.28
VPS35-212ENST00000640313 CLEC18AA5D8T8 446 aa0.78□□□□□ -2.28
VPS35-212ENST00000640313 PRR23AA6NEV1 266 aa0.78□□□□□ -2.28
VPS35-212ENST00000640313 ZNF814B7Z6K7 855 aa0.78□□□□□ -2.28
VPS35-212ENST00000640313 PODXLO00592 558 aa0.78□□□□□ -2.28
VPS35-212ENST00000640313 ERC2O15083 957 aa0.78□□□□□ -2.28
VPS35-212ENST00000640313 TLX3O43711 291 aaPredicted RBP0.78□□□□□ -2.28
VPS35-212ENST00000640313 GCATO75600 419 aa0.78□□□□□ -2.28
VPS35-212ENST00000640313 PAPSS2O95340 614 aaPredicted RBP0.78□□□□□ -2.28
VPS35-212ENST00000640313 MT-CO3P00414 261 aa0.78□□□□□ -2.28
VPS35-212ENST00000640313 SP1P08047 785 aa0.78□□□□□ -2.28
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms