RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 FAM49BQ9NUQ9 324 aa5.24□□□□□ -1.57
SCN1A-218ENST00000640036 DDIT4Q9NX09 232 aa5.24□□□□□ -1.57
SCN1A-218ENST00000640036 RHPN2P1A8MT19 583 aa5.24□□□□□ -1.57
SCN1A-218ENST00000640036 HNRNPCL2B2RXH8 293 aa5.24□□□□□ -1.57
SCN1A-218ENST00000640036 NT5C1B-RDH14C9J2C7 533 aa5.24□□□□□ -1.57
SCN1A-218ENST00000640036 HNRNPCL1O60812 293 aaKnown RBP5.24□□□□□ -1.57
SCN1A-218ENST00000640036 TJP3O95049 919 aa5.24□□□□□ -1.57
SCN1A-218ENST00000640036 FGFR1P11362 822 aa5.24□□□□□ -1.57
SCN1A-218ENST00000640036 RENBPP51606 427 aa5.24□□□□□ -1.57
SCN1A-218ENST00000640036 NR5A1Q13285 461 aa5.24□□□□□ -1.57
SCN1A-218ENST00000640036 SNW1Q13573 536 aaKnown RBP5.24□□□□□ -1.57
SCN1A-218ENST00000640036 TREML2Q5T2D2 321 aa5.24□□□□□ -1.57
SCN1A-218ENST00000640036 PHLDB3Q6NSJ2 640 aa5.24□□□□□ -1.57
SCN1A-218ENST00000640036 ZNF655Q8N720 491 aaPredicted RBP5.24□□□□□ -1.57
SCN1A-218ENST00000640036 ZNF513Q8N8E2 541 aaPredicted RBP5.24□□□□□ -1.57
SCN1A-218ENST00000640036 TFB1MQ8WVM0 346 aaKnown RBP5.24□□□□□ -1.57
SCN1A-218ENST00000640036 SYT15Q9BQS2 421 aa5.24□□□□□ -1.57
SCN1A-218ENST00000640036 CITO14578 2027 aa5.24□□□□□ -1.57
SCN1A-218ENST00000640036 KRT87PA6NCN2 255 aa5.24□□□□□ -1.57
SCN1A-218ENST00000640036 SYNDIG1LA6NDD5 238 aa5.24□□□□□ -1.57
SCN1A-218ENST00000640036 PODXLO00592 558 aa5.24□□□□□ -1.57
SCN1A-218ENST00000640036 ARHGEF9O43307 516 aa5.24□□□□□ -1.57
SCN1A-218ENST00000640036 FBXO21O94952 628 aa5.24□□□□□ -1.57
SCN1A-218ENST00000640036 NR3C1P04150 777 aa5.24□□□□□ -1.57
SCN1A-218ENST00000640036 SLC39A12Q504Y0 691 aa5.24□□□□□ -1.57
SCN1A-218ENST00000640036 C2orf27AQ580R0 203 aa5.24□□□□□ -1.57
SCN1A-218ENST00000640036 UNC13DQ70J99 1090 aa5.24□□□□□ -1.57
SCN1A-218ENST00000640036 PASD1Q8IV76 773 aa5.24□□□□□ -1.57
SCN1A-218ENST00000640036 CNOT6LQ96LI5 555 aaKnown RBP5.24□□□□□ -1.57
SCN1A-218ENST00000640036 GSDMAQ96QA5 445 aa5.24□□□□□ -1.57
SCN1A-218ENST00000640036 DNAJC25Q9H1X3 360 aa5.24□□□□□ -1.57
SCN1A-218ENST00000640036 JMJD4Q9H9V9 463 aa5.24□□□□□ -1.57
SCN1A-218ENST00000640036 NEUROD4Q9HD90 331 aa5.24□□□□□ -1.57
SCN1A-218ENST00000640036 DUS2Q9NX74 493 aaKnown RBP5.24□□□□□ -1.57
SCN1A-218ENST00000640036 DNMT3LQ9UJW3 386 aa5.24□□□□□ -1.57
SCN1A-218ENST00000640036 SPTA1P02549 2419 aa5.24□□□□□ -1.57
SCN1A-218ENST00000640036 RRM2BQ7LG56 351 aa5.24□□□□□ -1.57
SCN1A-218ENST00000640036 MMGT1Q8N4V1 131 aa5.24□□□□□ -1.57
SCN1A-218ENST00000640036 PRCCQ92733 491 aaPredicted RBP5.24□□□□□ -1.57
SCN1A-218ENST00000640036 SMARCD1Q96GM5 515 aa5.24□□□□□ -1.57
SCN1A-218ENST00000640036 GNL3Q9BVP2 549 aaKnown RBP eCLIP5.24□□□□□ -1.57
SCN1A-218ENST00000640036 PRDM12Q9H4Q4 367 aa5.24□□□□□ -1.57
SCN1A-218ENST00000640036 IFNKQ9P0W0 207 aa5.24□□□□□ -1.57
SCN1A-218ENST00000640036 VPS9D1Q9Y2B5 631 aa5.24□□□□□ -1.57
SCN1A-218ENST00000640036 C8AP07357 584 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 AKAP5P24588 427 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 CDC27P30260 824 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 ESRRGP62508 458 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 BASP1P80723 227 aaKnown RBP5.23□□□□□ -1.57
SCN1A-218ENST00000640036 MTX1Q13505 466 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 DDX1Q92499 740 aaKnown RBP5.23□□□□□ -1.57
SCN1A-218ENST00000640036 DACT3Q96B18 629 aaPredicted RBP5.23□□□□□ -1.57
SCN1A-218ENST00000640036 VMP1Q96GC9 406 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 ZNF576Q9H609 170 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 RPRD1BQ9NQG5 326 aaKnown RBP5.23□□□□□ -1.57
SCN1A-218ENST00000640036 DNAJC17Q9NVM6 304 aaKnown RBP5.23□□□□□ -1.57
SCN1A-218ENST00000640036 NMRK1Q9NWW6 199 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 BFARQ9NZS9 450 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 UBR1Q8IWV7 1749 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 PDS5AQ29RF7 1337 aaKnown RBP5.23□□□□□ -1.57
SCN1A-218ENST00000640036 A0A088AWK7 358 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 SMIM35A0A1B0GVV1 85 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 C3orf70A6NLC5 250 aaPredicted RBP5.23□□□□□ -1.57
SCN1A-218ENST00000640036 GOLGA8TH3BQL2 631 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 STX7O15400 261 aaKnown RBP5.23□□□□□ -1.57
SCN1A-218ENST00000640036 EXTL3O43909 919 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 MAN1A2O60476 641 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 ZNF10P21506 573 aaPredicted RBP5.23□□□□□ -1.57
SCN1A-218ENST00000640036 KLRK1P26718 216 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 RGS7P49802 495 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 STX1BP61266 288 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 DBN1Q16643 649 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 THOC7Q6I9Y2 204 aaKnown RBP5.23□□□□□ -1.57
SCN1A-218ENST00000640036 ZNF852Q6ZMS4 543 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 LPCAT2Q7L5N7 544 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 CCDC186Q7Z3E2 898 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 OR8K1Q8NGG5 319 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 FAR2Q96K12 515 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 RTP3Q9BQQ7 232 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 PRRG4Q9BZD6 226 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 FAM105AQ9NUU6 356 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 LTBP4Q8N2S1 1624 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 C2orf81A6NN90 581 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 C9J4A7 227 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 MTSS1O43312 755 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 ANXA6P08133 673 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 EN2P19622 333 aaPredicted RBP5.23□□□□□ -1.57
SCN1A-218ENST00000640036 GUCY1A2P33402 732 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 MLH1P40692 756 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 BCAT1P54687 386 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 NPEPPSP55786 919 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 CREB5Q02930 508 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 PDIA5Q14554 519 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 AMHR2Q16671 573 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 SNAP47Q5SQN1 464 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 HHATQ5VTY9 493 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 DENND5BQ6ZUT9 1274 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 PROM2Q8N271 834 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 LZTR1Q8N653 840 aa5.23□□□□□ -1.57
SCN1A-218ENST00000640036 IL22RA1Q8N6P7 574 aa5.23□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms