RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 TCERG1LQ5VWI1 586 aa17.18■□□□□ 0.34
TRIM28-213ENST00000598355 TANGO2Q6ICL3 276 aa17.18■□□□□ 0.34
TRIM28-213ENST00000598355 RBM43Q6ZSC3 357 aaKnown RBP17.18■□□□□ 0.34
TRIM28-213ENST00000598355 PAQR9Q6ZVX9 377 aa17.18■□□□□ 0.34
TRIM28-213ENST00000598355 FAM35AQ86V20 835 aa17.18■□□□□ 0.34
TRIM28-213ENST00000598355 FBXL6Q8N531 539 aa17.18■□□□□ 0.34
TRIM28-213ENST00000598355 MLKLQ8NB16 471 aa17.18■□□□□ 0.34
TRIM28-213ENST00000598355 ST13P5Q8NFI4 369 aaPredicted RBP17.18■□□□□ 0.34
TRIM28-213ENST00000598355 ZSCAN18Q8TBC5 510 aaPredicted RBP17.18■□□□□ 0.34
TRIM28-213ENST00000598355 FAM200AQ8TCP9 573 aa17.18■□□□□ 0.34
TRIM28-213ENST00000598355 GPT2Q8TD30 523 aa17.18■□□□□ 0.34
TRIM28-213ENST00000598355 WHAMMQ8TF30 809 aa17.18■□□□□ 0.34
TRIM28-213ENST00000598355 TWNKQ96RR1 684 aa17.18■□□□□ 0.34
TRIM28-213ENST00000598355 B3GNT5Q9BYG0 378 aa17.18■□□□□ 0.34
TRIM28-213ENST00000598355 PLA2G2FQ9BZM2 168 aa17.18■□□□□ 0.34
TRIM28-213ENST00000598355 ZNF518BQ9C0D4 1074 aa17.18■□□□□ 0.34
TRIM28-213ENST00000598355 ZFP14Q9HCL3 533 aa17.18■□□□□ 0.34
TRIM28-213ENST00000598355 UXTQ9UBK9 157 aaPredicted RBP17.18■□□□□ 0.34
TRIM28-213ENST00000598355 CACNA1HO95180 2353 aa17.17■□□□□ 0.34
TRIM28-213ENST00000598355 GNA14O95837 355 aa17.17■□□□□ 0.34
TRIM28-213ENST00000598355 PDGFBP01127 241 aaPredicted RBP17.17■□□□□ 0.34
TRIM28-213ENST00000598355 FMO5P49326 533 aa17.17■□□□□ 0.34
TRIM28-213ENST00000598355 STX17P56962 302 aa17.17■□□□□ 0.34
TRIM28-213ENST00000598355 CYP4F8P98187 520 aa17.17■□□□□ 0.34
TRIM28-213ENST00000598355 CYP27A1Q02318 531 aa17.17■□□□□ 0.34
TRIM28-213ENST00000598355 CWF19L1Q69YN2 538 aaKnown RBP17.17■□□□□ 0.34
TRIM28-213ENST00000598355 VITQ6UXI7 678 aa17.17■□□□□ 0.34
TRIM28-213ENST00000598355 FUKQ8N0W3 1084 aa17.17■□□□□ 0.34
TRIM28-213ENST00000598355 DEPDC1BQ8WUY9 529 aa17.17■□□□□ 0.34
TRIM28-213ENST00000598355 PBXIP1Q96AQ6 731 aa17.17■□□□□ 0.34
TRIM28-213ENST00000598355 ATXN3LQ9H3M9 355 aa17.17■□□□□ 0.34
TRIM28-213ENST00000598355 TASP1Q9H6P5 420 aa17.17■□□□□ 0.34
TRIM28-213ENST00000598355 OBP2AQ9NY56 170 aa17.17■□□□□ 0.34
TRIM28-213ENST00000598355 KRBA1A5PL33 1030 aa17.16■□□□□ 0.34
TRIM28-213ENST00000598355 F8VP50 259 aa17.16■□□□□ 0.34
TRIM28-213ENST00000598355 CLDN5O00501 218 aa17.16■□□□□ 0.34
TRIM28-213ENST00000598355 P4HA2O15460 535 aa17.16■□□□□ 0.34
TRIM28-213ENST00000598355 NPR3P17342 541 aa17.16■□□□□ 0.34
TRIM28-213ENST00000598355 DDX6P26196 483 aaKnown RBP eCLIP17.16■□□□□ 0.346e-15■□□□□ 9.7
TRIM28-213ENST00000598355 GPC5P78333 572 aa17.16■□□□□ 0.34
TRIM28-213ENST00000598355 CCDC40Q4G0X9 1142 aa17.16■□□□□ 0.34
TRIM28-213ENST00000598355 ARHGAP15Q53QZ3 475 aa17.16■□□□□ 0.34
TRIM28-213ENST00000598355 GPR158Q5T848 1215 aa17.16■□□□□ 0.34
TRIM28-213ENST00000598355 ACOT1Q86TX2 421 aa17.16■□□□□ 0.34
TRIM28-213ENST00000598355 SCN4BQ8IWT1 228 aa17.16■□□□□ 0.34
TRIM28-213ENST00000598355 CCDC150Q8NCX0 1101 aa17.16■□□□□ 0.34
TRIM28-213ENST00000598355 E2F7Q96AV8 911 aa17.16■□□□□ 0.34
TRIM28-213ENST00000598355 RSPRY1Q96DX4 576 aa17.16■□□□□ 0.34
TRIM28-213ENST00000598355 GCNAQ96QF7 691 aa17.16■□□□□ 0.34
TRIM28-213ENST00000598355 CSNK1G1Q9HCP0 422 aa17.16■□□□□ 0.34
TRIM28-213ENST00000598355 ARNTLO00327 626 aa17.15■□□□□ 0.34
TRIM28-213ENST00000598355 PRAMEF12O95522 483 aa17.15■□□□□ 0.34
TRIM28-213ENST00000598355 CFHP08603 1231 aa17.15■□□□□ 0.34
TRIM28-213ENST00000598355 GRIK1P39086 918 aa17.15■□□□□ 0.34
TRIM28-213ENST00000598355 USP46P62068 366 aa17.15■□□□□ 0.34
TRIM28-213ENST00000598355 FCHO2Q0JRZ9 810 aa17.15■□□□□ 0.34
TRIM28-213ENST00000598355 DPCR1Q3MIW9 517 aa17.15■□□□□ 0.34
TRIM28-213ENST00000598355 DENND5BQ6ZUT9 1274 aa17.15■□□□□ 0.34
TRIM28-213ENST00000598355 ARID3BQ8IVW6 561 aaPredicted RBP17.15■□□□□ 0.34
TRIM28-213ENST00000598355 TTC39CQ8N584 583 aa17.15■□□□□ 0.34
TRIM28-213ENST00000598355 UBR7Q8N806 425 aa17.15■□□□□ 0.34
TRIM28-213ENST00000598355 ZMIZ2Q8NF64 920 aa17.15■□□□□ 0.34
TRIM28-213ENST00000598355 LMO3Q8TAP4 145 aa17.15■□□□□ 0.34
TRIM28-213ENST00000598355 DNASE1L2Q92874 299 aa17.15■□□□□ 0.34
TRIM28-213ENST00000598355 SMARCD1Q96GM5 515 aa17.15■□□□□ 0.34
TRIM28-213ENST00000598355 ARID3AQ99856 593 aa17.15■□□□□ 0.34
TRIM28-213ENST00000598355 NT5C1AQ9BXI3 368 aa17.15■□□□□ 0.34
TRIM28-213ENST00000598355 SRRTQ9BXP5 876 aaKnown RBP17.15■□□□□ 0.34
TRIM28-213ENST00000598355 SLC46A2Q9BY10 475 aa17.15■□□□□ 0.34
TRIM28-213ENST00000598355 SLITRK6Q9H5Y7 841 aa17.15■□□□□ 0.34
TRIM28-213ENST00000598355 TRPV5Q9NQA5 729 aa17.15■□□□□ 0.34
TRIM28-213ENST00000598355 UTP3Q9NQZ2 479 aaKnown RBP eCLIP17.15■□□□□ 0.342e-7■■□□□ 11.4
TRIM28-213ENST00000598355 ARHGEF3Q9NR81 526 aa17.15■□□□□ 0.34
TRIM28-213ENST00000598355 IL37Q9NZH6 218 aa17.15■□□□□ 0.34
TRIM28-213ENST00000598355 ARIH1Q9Y4X5 557 aaPredicted RBP17.15■□□□□ 0.34
TRIM28-213ENST00000598355 ATP8B3O60423 1300 aa17.15■□□□□ 0.34
TRIM28-213ENST00000598355 FAM92AA1XBS5 289 aa17.14■□□□□ 0.33
TRIM28-213ENST00000598355 TNFRSF10BO14763 440 aa17.14■□□□□ 0.33
TRIM28-213ENST00000598355 CLSTN1O94985 981 aa17.14■□□□□ 0.33
TRIM28-213ENST00000598355 PSMC3P17980 439 aa17.14■□□□□ 0.33
TRIM28-213ENST00000598355 COL9A1P20849 921 aa17.14■□□□□ 0.33
TRIM28-213ENST00000598355 VIPR2P41587 438 aa17.14■□□□□ 0.33
TRIM28-213ENST00000598355 PFKPQ01813 784 aa17.14■□□□□ 0.33
TRIM28-213ENST00000598355 TAF12Q16514 161 aa17.14■□□□□ 0.33
TRIM28-213ENST00000598355 IRF2BP1Q8IU81 584 aa17.14■□□□□ 0.33
TRIM28-213ENST00000598355 MFSD6LQ8IWD5 586 aa17.14■□□□□ 0.33
TRIM28-213ENST00000598355 CMTM8Q8IZV2 173 aa17.14■□□□□ 0.33
TRIM28-213ENST00000598355 SIX5Q8N196 739 aa17.14■□□□□ 0.33
TRIM28-213ENST00000598355 TATDN2Q93075 761 aa17.14■□□□□ 0.33
TRIM28-213ENST00000598355 HNRNPABQ99729 332 aaKnown RBP17.14■□□□□ 0.33
TRIM28-213ENST00000598355 DDX23Q9BUQ8 820 aaKnown RBP17.14■□□□□ 0.33
TRIM28-213ENST00000598355 DMAP1Q9NPF5 467 aaPredicted RBP17.14■□□□□ 0.33
TRIM28-213ENST00000598355 KRT82Q9NSB4 513 aa17.14■□□□□ 0.33
TRIM28-213ENST00000598355 CISHQ9NSE2 258 aa17.14■□□□□ 0.33
TRIM28-213ENST00000598355 MAGED2Q9UNF1 606 aaPredicted RBP17.14■□□□□ 0.33
TRIM28-213ENST00000598355 HEPACAM2A8MVW5 462 aa17.13■□□□□ 0.33
TRIM28-213ENST00000598355 GOLGA6L22H0YM25 854 aa17.13■□□□□ 0.33
TRIM28-213ENST00000598355 FGFR1OPO95684 399 aaKnown RBP17.13■□□□□ 0.33
TRIM28-213ENST00000598355 CCDC130P13994 396 aa17.13■□□□□ 0.33
TRIM28-213ENST00000598355 ANXA13P27216 316 aa17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms