RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 BCL7CQ8WUZ0 217 aaPredicted RBP16.14■□□□□ 0.17
SS18-215ENST00000580642 ZNF653Q96CK0 615 aa16.14■□□□□ 0.17
SS18-215ENST00000580642 RNPC3Q96LT9 517 aaKnown RBP16.14■□□□□ 0.17
SS18-215ENST00000580642 PACSIN1Q9BY11 444 aa16.14■□□□□ 0.17
SS18-215ENST00000580642 B3GNT5Q9BYG0 378 aa16.14■□□□□ 0.17
SS18-215ENST00000580642 HCSTQ9UBK5 93 aa16.14■□□□□ 0.17
SS18-215ENST00000580642 CNOT8Q9UFF9 292 aaKnown RBP16.14■□□□□ 0.17
SS18-215ENST00000580642 GUCA1BQ9UMX6 200 aa16.14■□□□□ 0.17
SS18-215ENST00000580642 PCDHGC5Q9Y5F6 944 aa16.14■□□□□ 0.17
SS18-215ENST00000580642 C5orf67F2Z3F1 127 aa16.13■□□□□ 0.17
SS18-215ENST00000580642 ATP2C2O75185 946 aa16.13■□□□□ 0.17
SS18-215ENST00000580642 C1RP00736 705 aa16.13■□□□□ 0.17
SS18-215ENST00000580642 LINC00271P0C7V0 271 aa16.13■□□□□ 0.17
SS18-215ENST00000580642 CCDC130P13994 396 aa16.13■□□□□ 0.17
SS18-215ENST00000580642 ABCB4P21439 1286 aa16.13■□□□□ 0.17
SS18-215ENST00000580642 BMP8BP34820 402 aa16.13■□□□□ 0.17
SS18-215ENST00000580642 BMPR1AP36894 532 aa16.13■□□□□ 0.17
SS18-215ENST00000580642 GLUD2P49448 558 aa16.13■□□□□ 0.17
SS18-215ENST00000580642 PDE4CQ08493 712 aa16.13■□□□□ 0.17
SS18-215ENST00000580642 RTP2Q5QGT7 225 aa16.13■□□□□ 0.17
SS18-215ENST00000580642 ARCQ7LC44 396 aa16.13■□□□□ 0.17
SS18-215ENST00000580642 TMCO2Q7Z6W1 182 aaPredicted RBP16.13■□□□□ 0.17
SS18-215ENST00000580642 FAM35AQ86V20 835 aa16.13■□□□□ 0.17
SS18-215ENST00000580642 SPATA2LQ8IUW3 424 aaPredicted RBP16.13■□□□□ 0.17
SS18-215ENST00000580642 SYCE1Q8N0S2 351 aa16.13■□□□□ 0.17
SS18-215ENST00000580642 C17orf53Q8N3J3 647 aaPredicted RBP16.13■□□□□ 0.17
SS18-215ENST00000580642 C3orf20Q8ND61 904 aa16.13■□□□□ 0.17
SS18-215ENST00000580642 SLC35G2Q8TBE7 412 aa16.13■□□□□ 0.17
SS18-215ENST00000580642 SPPL2BQ8TCT7 592 aa16.13■□□□□ 0.17
SS18-215ENST00000580642 MYLPFQ96A32 169 aa16.13■□□□□ 0.17
SS18-215ENST00000580642 GDF15Q99988 308 aa16.13■□□□□ 0.17
SS18-215ENST00000580642 MED10Q9BTT4 135 aa16.13■□□□□ 0.17
SS18-215ENST00000580642 SYNCQ9H7C4 482 aa16.13■□□□□ 0.17
SS18-215ENST00000580642 FNIP2Q9P278 1114 aa16.13■□□□□ 0.17
SS18-215ENST00000580642 PCDHA11Q9Y5I1 949 aa16.13■□□□□ 0.17
SS18-215ENST00000580642 MKI67P46013 3256 aaKnown RBP16.12■□□□□ 0.17
SS18-215ENST00000580642 SART1O43290 800 aaKnown RBP16.12■□□□□ 0.17
SS18-215ENST00000580642 HCRTO43612 131 aa16.12■□□□□ 0.17
SS18-215ENST00000580642 FGF18O76093 207 aa16.12■□□□□ 0.17
SS18-215ENST00000580642 URODP06132 367 aa16.12■□□□□ 0.17
SS18-215ENST00000580642 ADORA2BP29275 332 aa16.12■□□□□ 0.17
SS18-215ENST00000580642 PBX3P40426 434 aa16.12■□□□□ 0.17
SS18-215ENST00000580642 PTPN20Q4JDL3 420 aa16.12■□□□□ 0.17
SS18-215ENST00000580642 TPGS2Q68CL5 300 aa16.12■□□□□ 0.17
SS18-215ENST00000580642 MMS22LQ6ZRQ5 1243 aa16.12■□□□□ 0.17
SS18-215ENST00000580642 SCML4Q8N228 414 aa16.12■□□□□ 0.17
SS18-215ENST00000580642 UBA3Q8TBC4 463 aa16.12■□□□□ 0.17
SS18-215ENST00000580642 C11orf70Q9BRQ4 267 aa16.12■□□□□ 0.17
SS18-215ENST00000580642 DMAP1Q9NPF5 467 aaPredicted RBP16.12■□□□□ 0.17
SS18-215ENST00000580642 PCDHB5Q9Y5E4 795 aa16.12■□□□□ 0.17
SS18-215ENST00000580642 DUSP10Q9Y6W6 482 aa16.12■□□□□ 0.17
SS18-215ENST00000580642 TSC2P49815 1807 aa16.12■□□□□ 0.17
SS18-215ENST00000580642 TCRBV5S1A1TA0A578 114 aa16.11■□□□□ 0.17
SS18-215ENST00000580642 MACROD2A1Z1Q3 448 aa16.11■□□□□ 0.17
SS18-215ENST00000580642 SIGLEC16A6NMB1 481 aa16.11■□□□□ 0.17
SS18-215ENST00000580642 AP1G2O75843 785 aa16.11■□□□□ 0.17
SS18-215ENST00000580642 FBXO21O94952 628 aa16.11■□□□□ 0.17
SS18-215ENST00000580642 CTSAP10619 480 aa16.11■□□□□ 0.17
SS18-215ENST00000580642 RRM1P23921 792 aa16.11■□□□□ 0.17
SS18-215ENST00000580642 NOP2P46087 812 aaKnown RBP16.11■□□□□ 0.17
SS18-215ENST00000580642 GNG11P61952 73 aa16.11■□□□□ 0.17
SS18-215ENST00000580642 MAMLD1Q13495 774 aa16.11■□□□□ 0.17
SS18-215ENST00000580642 PSMD5Q16401 504 aa16.11■□□□□ 0.17
SS18-215ENST00000580642 C11orf63Q6NUN7 778 aa16.11■□□□□ 0.17
SS18-215ENST00000580642 CLEC20AQ6ZU45 233 aa16.11■□□□□ 0.17
SS18-215ENST00000580642 LRRTM3Q86VH5 581 aa16.11■□□□□ 0.17
SS18-215ENST00000580642 FNIP1Q8TF40 1166 aa16.11■□□□□ 0.17
SS18-215ENST00000580642 RIN2Q8WYP3 895 aaPredicted RBP16.11■□□□□ 0.17
SS18-215ENST00000580642 MCRS1Q96EZ8 462 aa16.11■□□□□ 0.17
SS18-215ENST00000580642 C8orf48Q96LL4 319 aa16.11■□□□□ 0.17
SS18-215ENST00000580642 CPXM1Q96SM3 734 aa16.11■□□□□ 0.17
SS18-215ENST00000580642 VN1R3Q9BXE9 311 aa16.11■□□□□ 0.17
SS18-215ENST00000580642 RXFP1Q9HBX9 757 aa16.11■□□□□ 0.17
SS18-215ENST00000580642 MRPL17Q9NRX2 175 aaKnown RBP16.11■□□□□ 0.17
SS18-215ENST00000580642 KRT82Q9NSB4 513 aa16.11■□□□□ 0.17
SS18-215ENST00000580642 TMEM51Q9NW97 253 aa16.11■□□□□ 0.17
SS18-215ENST00000580642 COMMD8Q9NX08 183 aa16.11■□□□□ 0.17
SS18-215ENST00000580642 CTTNBP2NLQ9P2B4 639 aa16.11■□□□□ 0.17
SS18-215ENST00000580642 CYTH4Q9UIA0 394 aa16.11■□□□□ 0.17
SS18-215ENST00000580642 IRAK3Q9Y616 596 aa16.11■□□□□ 0.17
SS18-215ENST00000580642 A0A0U1RQJ8 604 aa16.1■□□□□ 0.17
SS18-215ENST00000580642 TRIM66O15016 1216 aa16.1■□□□□ 0.17
SS18-215ENST00000580642 GLI1P08151 1106 aa16.1■□□□□ 0.17
SS18-215ENST00000580642 TNNT1P13805 278 aa16.1■□□□□ 0.17
SS18-215ENST00000580642 RGS19P49795 217 aa16.1■□□□□ 0.17
SS18-215ENST00000580642 NAP1L1P55209 391 aaKnown RBP16.1■□□□□ 0.17
SS18-215ENST00000580642 TUBB2AQ13885 445 aa16.1■□□□□ 0.17
SS18-215ENST00000580642 ACAP1Q15027 740 aa16.1■□□□□ 0.17
SS18-215ENST00000580642 SHHQ15465 462 aa16.1■□□□□ 0.17
SS18-215ENST00000580642 SLC39A12Q504Y0 691 aa16.1■□□□□ 0.17
SS18-215ENST00000580642 RAB41Q5JT25 222 aa16.1■□□□□ 0.17
SS18-215ENST00000580642 ZNF569Q5MCW4 686 aa16.1■□□□□ 0.17
SS18-215ENST00000580642 PPP1R15BQ5SWA1 713 aa16.1■□□□□ 0.17
SS18-215ENST00000580642 PDE12Q6L8Q7 609 aaKnown RBP16.1■□□□□ 0.17
SS18-215ENST00000580642 PMF1Q6P1K2 205 aa16.1■□□□□ 0.17
SS18-215ENST00000580642 DNAJC24Q6P3W2 148 aa16.1■□□□□ 0.17
SS18-215ENST00000580642 TAS1R1Q7RTX1 841 aa16.1■□□□□ 0.17
SS18-215ENST00000580642 SLFN11Q7Z7L1 901 aa16.1■□□□□ 0.17
SS18-215ENST00000580642 PIGZQ86VD9 579 aa16.1■□□□□ 0.17
SS18-215ENST00000580642 XYLT1Q86Y38 959 aa16.1■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms