RNA–Protein interactions for RNA: ENST00000574799.5

CCDC40-212, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best)

Gene CCDC40, Length 3,795 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-212ENST00000574799 LRRC19Q9H756 370 aa10.02□□□□□ -0.81
CCDC40-212ENST00000574799 TELO2Q9Y4R8 837 aa10.02□□□□□ -0.81
CCDC40-212ENST00000574799 PCDHA3Q9Y5H8 950 aa10.02□□□□□ -0.81
CCDC40-212ENST00000574799 MGAMO43451 1857 aa10.02□□□□□ -0.81
CCDC40-212ENST00000574799 ZNF541Q9H0D2 1346 aa10.02□□□□□ -0.81
CCDC40-212ENST00000574799 FZD9O00144 591 aa10.02□□□□□ -0.81
CCDC40-212ENST00000574799 SGPL1O95470 568 aa10.02□□□□□ -0.81
CCDC40-212ENST00000574799 RPA1P27694 616 aa10.02□□□□□ -0.81
CCDC40-212ENST00000574799 CHN2P52757 468 aa10.02□□□□□ -0.81
CCDC40-212ENST00000574799 ZNF200P98182 395 aaPredicted RBP10.02□□□□□ -0.81
CCDC40-212ENST00000574799 LMNB2Q03252 620 aa10.02□□□□□ -0.81
CCDC40-212ENST00000574799 TSHZ1Q6ZSZ6 1077 aa10.02□□□□□ -0.81
CCDC40-212ENST00000574799 ACAD11Q709F0 780 aa10.02□□□□□ -0.81
CCDC40-212ENST00000574799 ULK2Q8IYT8 1036 aa10.02□□□□□ -0.81
CCDC40-212ENST00000574799 RBM15BQ8NDT2 890 aaKnown RBP10.02□□□□□ -0.81
CCDC40-212ENST00000574799 GSTCDQ8NEC7 633 aa10.02□□□□□ -0.81
CCDC40-212ENST00000574799 CCDC28BQ9BUN5 200 aa10.02□□□□□ -0.81
CCDC40-212ENST00000574799 WWP1Q9H0M0 922 aa10.02□□□□□ -0.81
CCDC40-212ENST00000574799 LGALS13Q9UHV8 139 aa10.02□□□□□ -0.81
CCDC40-212ENST00000574799 PPM1HQ9ULR3 514 aa10.02□□□□□ -0.81
CCDC40-212ENST00000574799 COPEO14579 308 aa10.01□□□□□ -0.81
CCDC40-212ENST00000574799 STRNO43815 780 aa10.01□□□□□ -0.81
CCDC40-212ENST00000574799 FKBP6O75344 327 aa10.01□□□□□ -0.81
CCDC40-212ENST00000574799 ARP10275 920 aa10.01□□□□□ -0.81
CCDC40-212ENST00000574799 INHBCP55103 352 aa10.01□□□□□ -0.81
CCDC40-212ENST00000574799 JAM2P57087 298 aa10.01□□□□□ -0.81
CCDC40-212ENST00000574799 TGFB2P61812 414 aa10.01□□□□□ -0.81
CCDC40-212ENST00000574799 DYNLT1P63172 113 aa10.01□□□□□ -0.81
CCDC40-212ENST00000574799 HPCAP84074 193 aa10.01□□□□□ -0.81
CCDC40-212ENST00000574799 CRLF3Q8IUI8 442 aa10.01□□□□□ -0.81
CCDC40-212ENST00000574799 PRPF18Q99633 342 aaKnown RBP10.01□□□□□ -0.81
CCDC40-212ENST00000574799 NAP1L4Q99733 375 aaKnown RBP10.01□□□□□ -0.81
CCDC40-212ENST00000574799 SLC13A1Q9BZW2 595 aa10.01□□□□□ -0.81
CCDC40-212ENST00000574799 SIX2Q9NPC8 291 aa10.01□□□□□ -0.81
CCDC40-212ENST00000574799 PFDN4Q9NQP4 134 aa10.01□□□□□ -0.81
CCDC40-212ENST00000574799 ZNF180Q9UJW8 692 aa10.01□□□□□ -0.81
CCDC40-212ENST00000574799 AGTPBP1Q9UPW5 1226 aa10.01□□□□□ -0.81
CCDC40-212ENST00000574799 DTNAQ9Y4J8 743 aa10.01□□□□□ -0.81
CCDC40-212ENST00000574799 BHMG1C9JSJ3 638 aaPredicted RBP10.01□□□□□ -0.81
CCDC40-212ENST00000574799 NFIBO00712 420 aa10.01□□□□□ -0.81
CCDC40-212ENST00000574799 TRAFD1O14545 582 aaPredicted RBP10.01□□□□□ -0.81
CCDC40-212ENST00000574799 TBX3O15119 743 aa10.01□□□□□ -0.81
CCDC40-212ENST00000574799 TOM1L1O75674 476 aa10.01□□□□□ -0.81
CCDC40-212ENST00000574799 VCLP18206 1134 aa10.01□□□□□ -0.81
CCDC40-212ENST00000574799 UBXN2AP68543 259 aa10.01□□□□□ -0.81
CCDC40-212ENST00000574799 PTK6Q13882 451 aa10.01□□□□□ -0.81
CCDC40-212ENST00000574799 COG2Q14746 738 aa10.01□□□□□ -0.81
CCDC40-212ENST00000574799 C16orf72Q14CZ0 275 aa10.01□□□□□ -0.81
CCDC40-212ENST00000574799 PSMD6Q15008 389 aa10.01□□□□□ -0.81
CCDC40-212ENST00000574799 ZYXQ15942 572 aaKnown RBP10.01□□□□□ -0.81
CCDC40-212ENST00000574799 C3orf62Q6ZUJ4 267 aa10.01□□□□□ -0.81
CCDC40-212ENST00000574799 RAPH1Q70E73 1250 aa10.01□□□□□ -0.81
CCDC40-212ENST00000574799 SAMD7Q7Z3H4 446 aa10.01□□□□□ -0.81
CCDC40-212ENST00000574799 SLFN12Q8IYM2 578 aa10.01□□□□□ -0.81
CCDC40-212ENST00000574799 GALNT4Q8N4A0 578 aa10.01□□□□□ -0.81
CCDC40-212ENST00000574799 GADD45GIP1Q8TAE8 222 aaPredicted RBP10.01□□□□□ -0.81
CCDC40-212ENST00000574799 SLC16A10Q8TF71 515 aa10.01□□□□□ -0.81
CCDC40-212ENST00000574799 PRR11Q96HE9 360 aaPredicted RBP10.01□□□□□ -0.81
CCDC40-212ENST00000574799 TRIM56Q9BRZ2 755 aaKnown RBP10.01□□□□□ -0.81
CCDC40-212ENST00000574799 DCLK3Q9C098 648 aa10.01□□□□□ -0.81
CCDC40-212ENST00000574799 RAB20Q9NX57 234 aa10.01□□□□□ -0.81
CCDC40-212ENST00000574799 LZTS1Q9Y250 596 aa10.01□□□□□ -0.81
CCDC40-212ENST00000574799 LOC100653049A0A140TA62 436 aa10.01□□□□□ -0.81
CCDC40-212ENST00000574799 XPO1O14980 1071 aaKnown RBP10.01□□□□□ -0.81
CCDC40-212ENST00000574799 MAGEB3O15480 346 aa10.01□□□□□ -0.81
CCDC40-212ENST00000574799 SORBS3O60504 671 aa10.01□□□□□ -0.81
CCDC40-212ENST00000574799 KRT34O76011 436 aa10.01□□□□□ -0.81
CCDC40-212ENST00000574799 CYP1A1P04798 512 aaPredicted RBP10.01□□□□□ -0.81
CCDC40-212ENST00000574799 ZSCAN5DPP0CG00 497 aa10.01□□□□□ -0.81
CCDC40-212ENST00000574799 NCF2P19878 526 aaPredicted RBP10.01□□□□□ -0.81
CCDC40-212ENST00000574799 RPL5P46777 297 aaKnown RBP10.01□□□□□ -0.81
CCDC40-212ENST00000574799 TMED10P49755 219 aaKnown RBP10.01□□□□□ -0.81
CCDC40-212ENST00000574799 MXI1P50539 228 aa10.01□□□□□ -0.81
CCDC40-212ENST00000574799 MRPS9P82933 396 aaKnown RBP10.01□□□□□ -0.81
CCDC40-212ENST00000574799 MTA1Q13330 715 aa10.01□□□□□ -0.81
CCDC40-212ENST00000574799 HIF1AQ16665 826 aa10.01□□□□□ -0.81
CCDC40-212ENST00000574799 EPC2Q52LR7 807 aa10.01□□□□□ -0.81
CCDC40-212ENST00000574799 EFHC1Q5JVL4 640 aa10.01□□□□□ -0.81
CCDC40-212ENST00000574799 DHDDSQ86SQ9 333 aa10.01□□□□□ -0.81
CCDC40-212ENST00000574799 RHPN2Q8IUC4 686 aa10.01□□□□□ -0.81
CCDC40-212ENST00000574799 POU5F2Q8N7G0 328 aa10.01□□□□□ -0.81
CCDC40-212ENST00000574799 REPS2Q8NFH8 660 aa10.01□□□□□ -0.81
CCDC40-212ENST00000574799 STRA6Q9BX79 667 aa10.01□□□□□ -0.81
CCDC40-212ENST00000574799 TMEM117Q9H0C3 514 aa10.01□□□□□ -0.81
CCDC40-212ENST00000574799 PARVGQ9HBI0 331 aa10.01□□□□□ -0.81
CCDC40-212ENST00000574799 SLC17A7Q9P2U7 560 aa10.01□□□□□ -0.81
CCDC40-212ENST00000574799 TCEAL9Q9UHQ7 104 aa10.01□□□□□ -0.81
CCDC40-212ENST00000574799 TSC22D4Q9Y3Q8 395 aa10.01□□□□□ -0.81
CCDC40-212ENST00000574799 ASTN1O14525 1302 aa10.01□□□□□ -0.81
CCDC40-212ENST00000574799 C15orf38-AP3S2A0A0A6YYH1 394 aa10□□□□□ -0.81
CCDC40-212ENST00000574799 CASQ2O14958 399 aaPredicted RBP10□□□□□ -0.81
CCDC40-212ENST00000574799 UQCRBP14927 111 aa10□□□□□ -0.81
CCDC40-212ENST00000574799 PMLP29590 882 aa10□□□□□ -0.81
CCDC40-212ENST00000574799 SSTR1P30872 391 aa10□□□□□ -0.81
CCDC40-212ENST00000574799 CCR3P51677 355 aa10□□□□□ -0.81
CCDC40-212ENST00000574799 GEMIN4P57678 1058 aaKnown RBP10□□□□□ -0.81
CCDC40-212ENST00000574799 RASA3Q14644 834 aa10□□□□□ -0.81
CCDC40-212ENST00000574799 TNFAIP8L3Q5GJ75 292 aa10□□□□□ -0.81
CCDC40-212ENST00000574799 DLK2Q6UY11 383 aa10□□□□□ -0.81
CCDC40-212ENST00000574799 ARPINQ7Z6K5 226 aa10□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms