RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 C1orf127Q8N9H9 656 aa23.91■■□□□ 1.42
VPS53-211ENST00000571805 SLC4A11Q8NBS3 891 aa23.91■■□□□ 1.42
VPS53-211ENST00000571805 KLHL29Q96CT2 875 aa23.91■■□□□ 1.42
VPS53-211ENST00000571805 MRRFQ96E11 262 aaKnown RBP23.91■■□□□ 1.42
VPS53-211ENST00000571805 NLRP4Q96MN2 994 aa23.91■■□□□ 1.42
VPS53-211ENST00000571805 TWNKQ96RR1 684 aa23.91■■□□□ 1.42
VPS53-211ENST00000571805 WDR83Q9BRX9 315 aaKnown RBP23.91■■□□□ 1.42
VPS53-211ENST00000571805 MAK16Q9BXY0 300 aaKnown RBP23.91■■□□□ 1.42
VPS53-211ENST00000571805 INO80BQ9C086 356 aaPredicted RBP23.91■■□□□ 1.42
VPS53-211ENST00000571805 YY1AP1Q9H869 796 aa23.91■■□□□ 1.42
VPS53-211ENST00000571805 METTL5Q9NRN9 209 aaKnown RBP23.91■■□□□ 1.42
VPS53-211ENST00000571805 WDR35Q9P2L0 1181 aa23.91■■□□□ 1.42
VPS53-211ENST00000571805 FETUBQ9UGM5 382 aa23.91■■□□□ 1.42
VPS53-211ENST00000571805 PHTF1Q9UMS5 762 aa23.91■■□□□ 1.42
VPS53-211ENST00000571805 GEMIN4P57678 1058 aaKnown RBP23.91■■□□□ 1.42
VPS53-211ENST00000571805 DLK2Q6UY11 383 aa23.91■■□□□ 1.42
VPS53-211ENST00000571805 CMASQ8NFW8 434 aaPredicted RBP23.91■■□□□ 1.42
VPS53-211ENST00000571805 E7ESA3 106 aa23.9■■□□□ 1.42
VPS53-211ENST00000571805 IQCF3P0C7M6 154 aa23.9■■□□□ 1.42
VPS53-211ENST00000571805 SSTR1P30872 391 aa23.9■■□□□ 1.42
VPS53-211ENST00000571805 ARL4CP56559 192 aa23.9■■□□□ 1.42
VPS53-211ENST00000571805 MBTD1Q05BQ5 628 aa23.9■■□□□ 1.42
VPS53-211ENST00000571805 TFDP1Q14186 410 aa23.9■■□□□ 1.42
VPS53-211ENST00000571805 UNC45BQ8IWX7 931 aa23.9■■□□□ 1.42
VPS53-211ENST00000571805 ZBTB10Q96DT7 871 aa23.9■■□□□ 1.42
VPS53-211ENST00000571805 HMGXB4Q9UGU5 601 aa23.9■■□□□ 1.42
VPS53-211ENST00000571805 TNFSF13BQ9Y275 285 aa23.9■■□□□ 1.42
VPS53-211ENST00000571805 NOP56O00567 594 aaKnown RBP23.89■■□□□ 1.42
VPS53-211ENST00000571805 CNMDO75829 334 aa23.89■■□□□ 1.42
VPS53-211ENST00000571805 IL18RAPO95256 599 aa23.89■■□□□ 1.42
VPS53-211ENST00000571805 ALADP13716 330 aa23.89■■□□□ 1.42
VPS53-211ENST00000571805 CCNB1P14635 433 aa23.89■■□□□ 1.42
VPS53-211ENST00000571805 CA4P22748 312 aa23.89■■□□□ 1.42
VPS53-211ENST00000571805 MOGSQ13724 837 aa23.89■■□□□ 1.42
VPS53-211ENST00000571805 TAF5Q15542 800 aa23.89■■□□□ 1.42
VPS53-211ENST00000571805 PYROXD1Q8WU10 500 aa23.89■■□□□ 1.42
VPS53-211ENST00000571805 ADAM33Q9BZ11 813 aa23.89■■□□□ 1.42
VPS53-211ENST00000571805 ELOVL4Q9GZR5 314 aa23.89■■□□□ 1.42
VPS53-211ENST00000571805 RPF1Q9H9Y2 349 aaKnown RBP23.89■■□□□ 1.42
VPS53-211ENST00000571805 SLCO1B3Q9NPD5 702 aa23.89■■□□□ 1.42
VPS53-211ENST00000571805 TCRBV7S3A2A0A539 114 aa23.89■■□□□ 1.41
VPS53-211ENST00000571805 PGK2P07205 417 aa23.89■■□□□ 1.41
VPS53-211ENST00000571805 NFICP08651 508 aa23.89■■□□□ 1.41
VPS53-211ENST00000571805 KRT16P08779 473 aa23.89■■□□□ 1.41
VPS53-211ENST00000571805 GABRB2P47870 512 aa23.89■■□□□ 1.41
VPS53-211ENST00000571805 E2F5Q15329 346 aa23.89■■□□□ 1.41
VPS53-211ENST00000571805 KIF2BQ8N4N8 673 aa23.89■■□□□ 1.41
VPS53-211ENST00000571805 CXorf38Q8TB03 319 aa23.89■■□□□ 1.41
VPS53-211ENST00000571805 RSAD2Q8WXG1 361 aa23.89■■□□□ 1.41
VPS53-211ENST00000571805 MCRS1Q96EZ8 462 aa23.89■■□□□ 1.41
VPS53-211ENST00000571805 FAXDC2Q96IV6 333 aa23.89■■□□□ 1.41
VPS53-211ENST00000571805 DHRS4Q9BTZ2 278 aa23.89■■□□□ 1.41
VPS53-211ENST00000571805 SMYD3Q9H7B4 428 aa23.89■■□□□ 1.41
VPS53-211ENST00000571805 SSU72Q9NP77 194 aaKnown RBP23.89■■□□□ 1.41
VPS53-211ENST00000571805 PCSK1NQ9UHG2 260 aa23.89■■□□□ 1.41
VPS53-211ENST00000571805 TRIM33Q9UPN9 1127 aa23.89■■□□□ 1.41
VPS53-211ENST00000571805 GPR25O00155 361 aa23.88■■□□□ 1.41
VPS53-211ENST00000571805 MIPP30301 263 aa23.88■■□□□ 1.41
VPS53-211ENST00000571805 SKIV2L2P42285 1042 aaKnown RBP23.88■■□□□ 1.41
VPS53-211ENST00000571805 EFTUD2Q15029 972 aaKnown RBP eCLIP23.88■■□□□ 1.41
VPS53-211ENST00000571805 ATP11CQ8NB49 1132 aa23.88■■□□□ 1.41
VPS53-211ENST00000571805 HGSO14964 777 aaPredicted RBP23.88■■□□□ 1.41
VPS53-211ENST00000571805 EDF1O60869 148 aaKnown RBP23.88■■□□□ 1.41
VPS53-211ENST00000571805 PTPN11Q06124 597 aaPredicted RBP23.88■■□□□ 1.41
VPS53-211ENST00000571805 ZC3H12AQ5D1E8 599 aaKnown RBP23.88■■□□□ 1.41
VPS53-211ENST00000571805 EFCAB12Q6NXP0 572 aa23.88■■□□□ 1.41
VPS53-211ENST00000571805 ADGRD1Q6QNK2 874 aa23.88■■□□□ 1.41
VPS53-211ENST00000571805 GADL1Q6ZQY3 521 aa23.88■■□□□ 1.41
VPS53-211ENST00000571805 KCTD6Q8NC69 237 aa23.88■■□□□ 1.41
VPS53-211ENST00000571805 SPATA33Q96N06 139 aa23.88■■□□□ 1.41
VPS53-211ENST00000571805 SYNCQ9H7C4 482 aa23.88■■□□□ 1.41
VPS53-211ENST00000571805 MCM8Q9UJA3 840 aa23.88■■□□□ 1.41
VPS53-211ENST00000571805 LACTBL1A8MY62 500 aa23.87■■□□□ 1.41
VPS53-211ENST00000571805 APOC4-APOC2K7ER74 178 aa23.87■■□□□ 1.41
VPS53-211ENST00000571805 CILPO75339 1184 aa23.87■■□□□ 1.41
VPS53-211ENST00000571805 MICAL2O94851 1124 aa23.87■■□□□ 1.41
VPS53-211ENST00000571805 TMEM63AO94886 807 aa23.87■■□□□ 1.41
VPS53-211ENST00000571805 TRUB2O95900 331 aaKnown RBP23.87■■□□□ 1.41
VPS53-211ENST00000571805 APOC2P02655 101 aa23.87■■□□□ 1.41
VPS53-211ENST00000571805 PHBP35232 272 aa23.87■■□□□ 1.41
VPS53-211ENST00000571805 CLCN3P51790 818 aa23.87■■□□□ 1.41
VPS53-211ENST00000571805 TMEM132AQ24JP5 1023 aa23.87■■□□□ 1.41
VPS53-211ENST00000571805 C3orf62Q6ZUJ4 267 aa23.87■■□□□ 1.41
VPS53-211ENST00000571805 MZB1Q8WU39 189 aa23.87■■□□□ 1.41
VPS53-211ENST00000571805 ACSS3Q9H6R3 686 aa23.87■■□□□ 1.41
VPS53-211ENST00000571805 EVPLQ92817 2033 aa23.87■■□□□ 1.41
VPS53-211ENST00000571805 FGFR1P11362 822 aa23.87■■□□□ 1.41
VPS53-211ENST00000571805 KRT4P19013 534 aa23.87■■□□□ 1.41
VPS53-211ENST00000571805 YARSP54577 528 aaKnown RBP23.87■■□□□ 1.41
VPS53-211ENST00000571805 CCDC62Q6P9F0 684 aa23.87■■□□□ 1.41
VPS53-211ENST00000571805 RFX6Q8HWS3 928 aa23.87■■□□□ 1.41
VPS53-211ENST00000571805 FBXO36Q8NEA4 188 aa23.87■■□□□ 1.41
VPS53-211ENST00000571805 UNC5CO95185 931 aa23.86■■□□□ 1.41
VPS53-211ENST00000571805 MAP2K2P36507 400 aa23.86■■□□□ 1.41
VPS53-211ENST00000571805 GPD2P43304 727 aa23.86■■□□□ 1.41
VPS53-211ENST00000571805 ACAP1Q15027 740 aa23.86■■□□□ 1.41
VPS53-211ENST00000571805 DHX37Q8IY37 1157 aaKnown RBP23.86■■□□□ 1.41
VPS53-211ENST00000571805 TAB3Q8N5C8 712 aaPredicted RBP23.86■■□□□ 1.41
VPS53-211ENST00000571805 LRRC8CQ8TDW0 803 aa23.86■■□□□ 1.41
VPS53-211ENST00000571805 FBF1Q8TES7 1133 aa23.86■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms