RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 MRPS31Q92665 395 aaKnown RBP21.64■■□□□ 1.05
CLK3-225ENST00000569063 MRPS17Q9Y2R5 130 aaKnown RBP21.64■■□□□ 1.05
CLK3-225ENST00000569063 MAN2B1O00754 1011 aa21.63■■□□□ 1.05
CLK3-225ENST00000569063 TRIM66O15016 1216 aa21.63■■□□□ 1.05
CLK3-225ENST00000569063 HLA-DRAP01903 254 aa21.63■■□□□ 1.05
CLK3-225ENST00000569063 PPP3CAQ08209 521 aa21.63■■□□□ 1.05
CLK3-225ENST00000569063 UBXN2BQ14CS0 331 aa21.63■■□□□ 1.05
CLK3-225ENST00000569063 ANGPT1Q15389 498 aa21.63■■□□□ 1.05
CLK3-225ENST00000569063 TXNDC8Q6A555 127 aa21.63■■□□□ 1.05
CLK3-225ENST00000569063 ALYREFQ86V81 257 aaKnown RBP21.63■■□□□ 1.05
CLK3-225ENST00000569063 CELF5Q8N6W0 485 aaKnown RBP21.63■■□□□ 1.05
CLK3-225ENST00000569063 BPIFB1Q8TDL5 484 aa21.63■■□□□ 1.05
CLK3-225ENST00000569063 ERCC4Q92889 916 aaPredicted RBP21.63■■□□□ 1.05
CLK3-225ENST00000569063 ELMO3Q96BJ8 720 aa21.63■■□□□ 1.05
CLK3-225ENST00000569063 C8orf48Q96LL4 319 aa21.63■■□□□ 1.05
CLK3-225ENST00000569063 SDCBP2Q9H190 292 aa21.63■■□□□ 1.05
CLK3-225ENST00000569063 COL4A2P08572 1712 aa21.63■■□□□ 1.05
CLK3-225ENST00000569063 CETN3O15182 167 aa21.62■■□□□ 1.05
CLK3-225ENST00000569063 LRRN2O75325 713 aa21.62■■□□□ 1.05
CLK3-225ENST00000569063 TADA3O75528 432 aa21.62■■□□□ 1.05
CLK3-225ENST00000569063 TRIM49P0CI25 452 aa21.62■■□□□ 1.05
CLK3-225ENST00000569063 TRIM49CP0CI26 452 aa21.62■■□□□ 1.05
CLK3-225ENST00000569063 ANXA13P27216 316 aa21.62■■□□□ 1.05
CLK3-225ENST00000569063 AVPR1AP37288 418 aa21.62■■□□□ 1.05
CLK3-225ENST00000569063 PIK3CAP42336 1068 aa21.62■■□□□ 1.05
CLK3-225ENST00000569063 MRE11P49959 708 aa21.62■■□□□ 1.05
CLK3-225ENST00000569063 ARHGAP29Q52LW3 1261 aa21.62■■□□□ 1.05
CLK3-225ENST00000569063 CLDN23Q96B33 292 aa21.62■■□□□ 1.05
CLK3-225ENST00000569063 TNIP3Q96KP6 325 aa21.62■■□□□ 1.05
CLK3-225ENST00000569063 B3GNT5Q9BYG0 378 aa21.62■■□□□ 1.05
CLK3-225ENST00000569063 ELOVL4Q9GZR5 314 aa21.62■■□□□ 1.05
CLK3-225ENST00000569063 FAM86C1Q9NVL1 165 aa21.62■■□□□ 1.05
CLK3-225ENST00000569063 EHD2Q9NZN4 543 aa21.62■■□□□ 1.05
CLK3-225ENST00000569063 DENND4CQ5VZ89 1909 aa21.61■■□□□ 1.05
CLK3-225ENST00000569063 NCAM2O15394 837 aa21.61■■□□□ 1.05
CLK3-225ENST00000569063 CLSTN1O94985 981 aa21.61■■□□□ 1.05
CLK3-225ENST00000569063 TARSP26639 723 aaKnown RBP21.61■■□□□ 1.05
CLK3-225ENST00000569063 GTF2H1P32780 548 aa21.61■■□□□ 1.05
CLK3-225ENST00000569063 MAGEA9P43362 315 aa21.61■■□□□ 1.05
CLK3-225ENST00000569063 RAP1GAPP47736 663 aa21.61■■□□□ 1.05
CLK3-225ENST00000569063 GCLMP48507 274 aa21.61■■□□□ 1.05
CLK3-225ENST00000569063 NOP14P78316 857 aaKnown RBP21.61■■□□□ 1.05
CLK3-225ENST00000569063 SCARA5Q6ZMJ2 495 aa21.61■■□□□ 1.05
CLK3-225ENST00000569063 DENND5BQ6ZUT9 1274 aa21.61■■□□□ 1.05
CLK3-225ENST00000569063 ADSSL1Q8N142 457 aa21.61■■□□□ 1.05
CLK3-225ENST00000569063 ZNF687Q8N1G0 1237 aa21.61■■□□□ 1.05
CLK3-225ENST00000569063 CSGALNACT1Q8TDX6 532 aa21.61■■□□□ 1.05
CLK3-225ENST00000569063 USP13Q92995 863 aaPredicted RBP21.61■■□□□ 1.05
CLK3-225ENST00000569063 MSANTD3Q96H12 275 aa21.61■■□□□ 1.05
CLK3-225ENST00000569063 TTLL2Q9BWV7 592 aa21.61■■□□□ 1.05
CLK3-225ENST00000569063 BCO2Q9BYV7 579 aa21.61■■□□□ 1.05
CLK3-225ENST00000569063 SMG9Q9H0W8 520 aaKnown RBP21.61■■□□□ 1.05
CLK3-225ENST00000569063 TMEM8AQ9HCN3 771 aa21.61■■□□□ 1.05
CLK3-225ENST00000569063 TDP1Q9NUW8 608 aa21.61■■□□□ 1.05
CLK3-225ENST00000569063 PIAS3Q9Y6X2 628 aa21.61■■□□□ 1.05
CLK3-225ENST00000569063 PTPRDP23468 1912 aa21.61■■□□□ 1.05
CLK3-225ENST00000569063 OBSL1O75147 1896 aa21.6■■□□□ 1.05
CLK3-225ENST00000569063 F8VP50 259 aa21.6■■□□□ 1.05
CLK3-225ENST00000569063 KINO60870 393 aaKnown RBP21.6■■□□□ 1.05
CLK3-225ENST00000569063 EPB41P11171 864 aaKnown RBP21.6■■□□□ 1.05
CLK3-225ENST00000569063 ASPAP45381 313 aa21.6■■□□□ 1.05
CLK3-225ENST00000569063 RPS9P46781 194 aaKnown RBP21.6■■□□□ 1.05
CLK3-225ENST00000569063 CACNA2D1P54289 1103 aa21.6■■□□□ 1.05
CLK3-225ENST00000569063 PLCB2Q00722 1185 aa21.6■■□□□ 1.05
CLK3-225ENST00000569063 FZD5Q13467 585 aa21.6■■□□□ 1.05
CLK3-225ENST00000569063 ZNF268Q14587 947 aaPredicted RBP21.6■■□□□ 1.05
CLK3-225ENST00000569063 ANKRD40Q6AI12 368 aa21.6■■□□□ 1.05
CLK3-225ENST00000569063 SPOPLQ6IQ16 392 aa21.6■■□□□ 1.05
CLK3-225ENST00000569063 C1orf210Q8IVY1 113 aa21.6■■□□□ 1.05
CLK3-225ENST00000569063 ZC3H3Q8IXZ2 948 aaKnown RBP21.6■■□□□ 1.05
CLK3-225ENST00000569063 TAS1R2Q8TE23 839 aa21.6■■□□□ 1.05
CLK3-225ENST00000569063 FAM3CQ92520 227 aa21.6■■□□□ 1.05
CLK3-225ENST00000569063 EEF2KMTQ96G04 330 aa21.6■■□□□ 1.05
CLK3-225ENST00000569063 TSG101Q99816 390 aa21.6■■□□□ 1.05
CLK3-225ENST00000569063 IMPG2Q9BZV3 1241 aa21.6■■□□□ 1.05
CLK3-225ENST00000569063 ZNF518BQ9C0D4 1074 aa21.6■■□□□ 1.05
CLK3-225ENST00000569063 KIF9Q9HAQ2 790 aa21.6■■□□□ 1.05
CLK3-225ENST00000569063 TMEM30AQ9NV96 361 aa21.6■■□□□ 1.05
CLK3-225ENST00000569063 THG1LQ9NWX6 298 aaKnown RBP21.6■■□□□ 1.05
CLK3-225ENST00000569063 CCL26Q9Y258 94 aa21.6■■□□□ 1.05
CLK3-225ENST00000569063 TICRRQ7Z2Z1 1910 aa21.59■■□□□ 1.05
CLK3-225ENST00000569063 PROB1E7EW31 1015 aa21.59■■□□□ 1.05
CLK3-225ENST00000569063 CLDN5O00501 218 aa21.59■■□□□ 1.05
CLK3-225ENST00000569063 GADD45BO75293 160 aaPredicted RBP21.59■■□□□ 1.05
CLK3-225ENST00000569063 NBL1P41271 181 aa21.59■■□□□ 1.05
CLK3-225ENST00000569063 USP46P62068 366 aa21.59■■□□□ 1.05
CLK3-225ENST00000569063 FKBP3Q00688 224 aaKnown RBP21.59■■□□□ 1.05
CLK3-225ENST00000569063 LRRC63Q05C16 580 aa21.59■■□□□ 1.05
CLK3-225ENST00000569063 KRT39Q6A163 491 aa21.59■■□□□ 1.05
CLK3-225ENST00000569063 C1orf228Q6PIY5 440 aa21.59■■□□□ 1.05
CLK3-225ENST00000569063 UNC93AQ86WB7 457 aa21.59■■□□□ 1.05
CLK3-225ENST00000569063 CRYBG2Q8N1P7 616 aa21.59■■□□□ 1.05
CLK3-225ENST00000569063 ZFYVE19Q96K21 471 aa21.59■■□□□ 1.05
CLK3-225ENST00000569063 C8orf33Q9H7E9 229 aaPredicted RBP21.59■■□□□ 1.05
CLK3-225ENST00000569063 APOBEC3GQ9HC16 384 aaKnown RBP21.59■■□□□ 1.05
CLK3-225ENST00000569063 GREB1Q4ZG55 1949 aa21.59■■□□□ 1.05
CLK3-225ENST00000569063 STX10O60499 249 aa21.58■■□□□ 1.05
CLK3-225ENST00000569063 PPP3CCP48454 512 aa21.58■■□□□ 1.05
CLK3-225ENST00000569063 NDST1P52848 882 aa21.58■■□□□ 1.05
CLK3-225ENST00000569063 PMS1P54277 932 aaKnown RBP21.58■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 65.4 ms