RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 PIWIL3Q7Z3Z3 882 aaKnown RBP3.3□□□□□ -1.88
VPS35-209ENST00000568642 ZER1Q7Z7L7 766 aa3.3□□□□□ -1.88
VPS35-209ENST00000568642 PRPF39Q86UA1 669 aaKnown RBP3.3□□□□□ -1.88
VPS35-209ENST00000568642 CHD1LQ86WJ1 897 aa3.3□□□□□ -1.88
VPS35-209ENST00000568642 PPIL6Q8IXY8 311 aa3.3□□□□□ -1.88
VPS35-209ENST00000568642 SCML4Q8N228 414 aa3.3□□□□□ -1.88
VPS35-209ENST00000568642 TMEM130Q8N3G9 435 aa3.3□□□□□ -1.88
VPS35-209ENST00000568642 GLIS1Q8NBF1 620 aa3.3□□□□□ -1.88
VPS35-209ENST00000568642 CEP70Q8NHQ1 597 aa3.3□□□□□ -1.88
VPS35-209ENST00000568642 KCNG4Q8TDN1 519 aa3.3□□□□□ -1.88
VPS35-209ENST00000568642 TBC1D22AQ8WUA7 517 aa3.3□□□□□ -1.88
VPS35-209ENST00000568642 CYB5D2Q8WUJ1 264 aa3.3□□□□□ -1.88
VPS35-209ENST00000568642 NRG4Q8WWG1 115 aa3.3□□□□□ -1.88
VPS35-209ENST00000568642 KAT5Q92993 513 aa3.3□□□□□ -1.88
VPS35-209ENST00000568642 C1orf74Q96LT6 269 aa3.3□□□□□ -1.88
VPS35-209ENST00000568642 ZDHHC15Q96MV8 337 aa3.3□□□□□ -1.88
VPS35-209ENST00000568642 TMEM237Q96Q45 408 aa3.3□□□□□ -1.88
VPS35-209ENST00000568642 YME1L1Q96TA2 773 aa3.3□□□□□ -1.88
VPS35-209ENST00000568642 EYA3Q99504 573 aa3.3□□□□□ -1.88
VPS35-209ENST00000568642 BOCQ9BWV1 1114 aa3.3□□□□□ -1.88
VPS35-209ENST00000568642 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP3.3□□□□□ -1.88
VPS35-209ENST00000568642 SIL1Q9H173 461 aa3.3□□□□□ -1.88
VPS35-209ENST00000568642 SOX17Q9H6I2 414 aaPredicted RBP3.3□□□□□ -1.88
VPS35-209ENST00000568642 C7orf69Q9H7B7 122 aa3.3□□□□□ -1.88
VPS35-209ENST00000568642 RC3H2Q9HBD1 1191 aaKnown RBP3.3□□□□□ -1.88
VPS35-209ENST00000568642 FANCFQ9NPI8 374 aa3.3□□□□□ -1.88
VPS35-209ENST00000568642 HAUS2Q9NVX0 235 aa3.3□□□□□ -1.88
VPS35-209ENST00000568642 POGKQ9P215 609 aa3.3□□□□□ -1.88
VPS35-209ENST00000568642 RABL2AQ9UBK7 228 aaPredicted RBP3.3□□□□□ -1.88
VPS35-209ENST00000568642 LAMP5Q9UJQ1 280 aa3.3□□□□□ -1.88
VPS35-209ENST00000568642 MAGED2Q9UNF1 606 aaPredicted RBP3.3□□□□□ -1.88
VPS35-209ENST00000568642 MINPP1Q9UNW1 487 aa3.3□□□□□ -1.88
VPS35-209ENST00000568642 CLCA2Q9UQC9 943 aa3.3□□□□□ -1.88
VPS35-209ENST00000568642 NAALADL1Q9UQQ1 740 aa3.3□□□□□ -1.88
VPS35-209ENST00000568642 MAN2B2Q9Y2E5 1009 aa3.3□□□□□ -1.88
VPS35-209ENST00000568642 SNX8Q9Y5X2 465 aa3.3□□□□□ -1.88
VPS35-209ENST00000568642 PSAT1Q9Y617 370 aa3.3□□□□□ -1.88
VPS35-209ENST00000568642 EPN1Q9Y6I3 576 aaPredicted RBP3.3□□□□□ -1.88
VPS35-209ENST00000568642 SLX4Q8IY92 1834 aa3.3□□□□□ -1.88
VPS35-209ENST00000568642 CNOT1A5YKK6 2376 aaKnown RBP3.3□□□□□ -1.88
VPS35-209ENST00000568642 ZNF609O15014 1411 aa3.29□□□□□ -1.88
VPS35-209ENST00000568642 PRAMEF27A3QJZ7 478 aa3.29□□□□□ -1.88
VPS35-209ENST00000568642 NT5C1B-RDH14C9J2C7 533 aa3.29□□□□□ -1.88
VPS35-209ENST00000568642 IPO8O15397 1037 aaKnown RBP3.29□□□□□ -1.88
VPS35-209ENST00000568642 PHGDHO43175 533 aaKnown RBP3.29□□□□□ -1.88
VPS35-209ENST00000568642 TGFB1I1O43294 461 aa3.29□□□□□ -1.88
VPS35-209ENST00000568642 C22orf31O95567 290 aa3.29□□□□□ -1.88
VPS35-209ENST00000568642 GUCA1CO95843 209 aa3.29□□□□□ -1.88
VPS35-209ENST00000568642 CELA3BP08861 270 aa3.29□□□□□ -1.88
VPS35-209ENST00000568642 HNRNPA1P09651 372 aaKnown RBP eCLIP3.29□□□□□ -1.88
VPS35-209ENST00000568642 PCP11498 1178 aaKnown RBP3.29□□□□□ -1.88
VPS35-209ENST00000568642 LAMP2P13473 410 aa3.29□□□□□ -1.88
VPS35-209ENST00000568642 SCG2P13521 617 aa3.29□□□□□ -1.88
VPS35-209ENST00000568642 ALADP13716 330 aa3.29□□□□□ -1.88
VPS35-209ENST00000568642 IL1R1P14778 569 aa3.29□□□□□ -1.88
VPS35-209ENST00000568642 RPS2P15880 293 aaKnown RBP3.29□□□□□ -1.88
VPS35-209ENST00000568642 ALOX15P16050 662 aaPredicted RBP3.29□□□□□ -1.88
VPS35-209ENST00000568642 GLB1P16278 677 aa3.29□□□□□ -1.88
VPS35-209ENST00000568642 PDE6AP16499 860 aa3.29□□□□□ -1.88
VPS35-209ENST00000568642 XBP1P17861 261 aa3.29□□□□□ -1.88
VPS35-209ENST00000568642 HOXD10P28358 340 aa3.29□□□□□ -1.88
VPS35-209ENST00000568642 DPP6P42658 865 aa3.29□□□□□ -1.88
VPS35-209ENST00000568642 IL12RB1P42701 662 aa3.29□□□□□ -1.88
VPS35-209ENST00000568642 MAGEA10P43363 369 aaPredicted RBP3.29□□□□□ -1.88
VPS35-209ENST00000568642 USP11P51784 963 aa3.29□□□□□ -1.88
VPS35-209ENST00000568642 STARD6P59095 220 aa3.29□□□□□ -1.88
VPS35-209ENST00000568642 CYP4A11Q02928 519 aa3.29□□□□□ -1.88
VPS35-209ENST00000568642 DUSP4Q13115 394 aa3.29□□□□□ -1.88
VPS35-209ENST00000568642 PLS1Q14651 629 aa3.29□□□□□ -1.88
VPS35-209ENST00000568642 KCNB1Q14721 858 aa3.29□□□□□ -1.88
VPS35-209ENST00000568642 TAF7Q15545 349 aaPredicted RBP3.29□□□□□ -1.88
VPS35-209ENST00000568642 CPEB4Q17RY0 729 aaKnown RBP eCLIP3.29□□□□□ -1.88
VPS35-209ENST00000568642 KRTAP19-4Q3LI73 84 aa3.29□□□□□ -1.88
VPS35-209ENST00000568642 CEP135Q66GS9 1140 aa3.29□□□□□ -1.88
VPS35-209ENST00000568642 RNF43Q68DV7 783 aa3.29□□□□□ -1.88
VPS35-209ENST00000568642 MFSD5Q6N075 450 aa3.29□□□□□ -1.88
VPS35-209ENST00000568642 MTFR2Q6P444 385 aa3.29□□□□□ -1.88
VPS35-209ENST00000568642 SLC22A25Q6T423 547 aa3.29□□□□□ -1.88
VPS35-209ENST00000568642 CCDC73Q6ZRK6 1079 aa3.29□□□□□ -1.88
VPS35-209ENST00000568642 USP50Q70EL3 339 aaPredicted RBP3.29□□□□□ -1.88
VPS35-209ENST00000568642 DGLUCYQ7Z3D6 616 aa3.29□□□□□ -1.88
VPS35-209ENST00000568642 ZNF804AQ7Z570 1209 aa3.29□□□□□ -1.88
VPS35-209ENST00000568642 ANKS1BQ7Z6G8 1248 aa3.29□□□□□ -1.88
VPS35-209ENST00000568642 OSTM1Q86WC4 334 aa3.29□□□□□ -1.88
VPS35-209ENST00000568642 CILP2Q8IUL8 1156 aa3.29□□□□□ -1.88
VPS35-209ENST00000568642 TMEM151BQ8IW70 566 aa3.29□□□□□ -1.88
VPS35-209ENST00000568642 PHACTR4Q8IZ21 702 aa3.29□□□□□ -1.88
VPS35-209ENST00000568642 FIBCD1Q8N539 461 aa3.29□□□□□ -1.88
VPS35-209ENST00000568642 C2orf69Q8N8R5 385 aa3.29□□□□□ -1.88
VPS35-209ENST00000568642 KCTD6Q8NC69 237 aa3.29□□□□□ -1.88
VPS35-209ENST00000568642 MOSPD2Q8NHP6 518 aa3.29□□□□□ -1.88
VPS35-209ENST00000568642 SCAMP5Q8TAC9 235 aa3.29□□□□□ -1.88
VPS35-209ENST00000568642 SHKBP1Q8TBC3 707 aa3.29□□□□□ -1.88
VPS35-209ENST00000568642 ZNF384Q8TF68 577 aa3.29□□□□□ -1.88
VPS35-209ENST00000568642 SLC22A17Q8WUG5 538 aa3.29□□□□□ -1.88
VPS35-209ENST00000568642 CFHR4Q92496 578 aa3.29□□□□□ -1.88
VPS35-209ENST00000568642 RTF1Q92541 710 aaKnown RBP3.29□□□□□ -1.88
VPS35-209ENST00000568642 TRIM63Q969Q1 353 aa3.29□□□□□ -1.88
VPS35-209ENST00000568642 FBXW5Q969U6 566 aa3.29□□□□□ -1.88
VPS35-209ENST00000568642 ZNF566Q969W8 418 aa3.29□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms