RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 FAM163BP0C2L3 166 aa20.02■□□□□ 0.8
CLN3-218ENST00000565688 ZSCAN22P10073 491 aaPredicted RBP20.02■□□□□ 0.8
CLN3-218ENST00000565688 DLATP10515 647 aaKnown RBP20.02■□□□□ 0.8
CLN3-218ENST00000565688 TNNI1P19237 187 aa20.02■□□□□ 0.8
CLN3-218ENST00000565688 TGM1P22735 817 aa20.02■□□□□ 0.8
CLN3-218ENST00000565688 LMO2P25791 158 aa20.02■□□□□ 0.8
CLN3-218ENST00000565688 PSMC1P62191 440 aaKnown RBP20.02■□□□□ 0.8
CLN3-218ENST00000565688 EHHADHQ08426 723 aa20.02■□□□□ 0.8
CLN3-218ENST00000565688 DMWDQ09019 674 aa20.02■□□□□ 0.8
CLN3-218ENST00000565688 MTF1Q14872 753 aa20.02■□□□□ 0.8
CLN3-218ENST00000565688 PSMD6Q15008 389 aa20.02■□□□□ 0.8
CLN3-218ENST00000565688 LPAL2Q16609 132 aa20.02■□□□□ 0.8
CLN3-218ENST00000565688 CCDC142Q17RM4 750 aa20.02■□□□□ 0.8
CLN3-218ENST00000565688 CPA6Q8N4T0 437 aa20.02■□□□□ 0.8
CLN3-218ENST00000565688 XXYLT1Q8NBI6 393 aa20.02■□□□□ 0.8
CLN3-218ENST00000565688 RDH13Q8NBN7 331 aa20.02■□□□□ 0.8
CLN3-218ENST00000565688 SCFD1Q8WVM8 642 aa20.02■□□□□ 0.8
CLN3-218ENST00000565688 MYLPFQ96A32 169 aa20.02■□□□□ 0.8
CLN3-218ENST00000565688 CGRRF1Q99675 332 aa20.02■□□□□ 0.8
CLN3-218ENST00000565688 FAM13BQ9NYF5 915 aa20.02■□□□□ 0.8
CLN3-218ENST00000565688 ZNF638Q14966 1978 aaKnown RBP20.01■□□□□ 0.79
CLN3-218ENST00000565688 PVALEFA0A1B0GWK0 134 aa20.01■□□□□ 0.79
CLN3-218ENST00000565688 OTOL1A6NHN0 477 aaPredicted RBP20.01■□□□□ 0.79
CLN3-218ENST00000565688 TACC1O75410 805 aa20.01■□□□□ 0.79
CLN3-218ENST00000565688 ARSAP15289 507 aa20.01■□□□□ 0.79
CLN3-218ENST00000565688 PFKLP17858 780 aa20.01■□□□□ 0.79
CLN3-218ENST00000565688 DRD1P21728 446 aa20.01■□□□□ 0.79
CLN3-218ENST00000565688 ANXA13P27216 316 aa20.01■□□□□ 0.79
CLN3-218ENST00000565688 GRIK1P39086 918 aa20.01■□□□□ 0.79
CLN3-218ENST00000565688 ME1P48163 572 aa20.01■□□□□ 0.79
CLN3-218ENST00000565688 CYP2J2P51589 502 aa20.01■□□□□ 0.79
CLN3-218ENST00000565688 CYP24A1Q07973 514 aa20.01■□□□□ 0.79
CLN3-218ENST00000565688 KCNB1Q14721 858 aa20.01■□□□□ 0.79
CLN3-218ENST00000565688 ZNF77Q15935 545 aa20.01■□□□□ 0.79
CLN3-218ENST00000565688 BMT2Q1RMZ1 405 aa20.01■□□□□ 0.79
CLN3-218ENST00000565688 FOXD4L5Q5VV16 416 aaPredicted RBP20.01■□□□□ 0.79
CLN3-218ENST00000565688 HEATR6Q6AI08 1181 aaKnown RBP20.01■□□□□ 0.79
CLN3-218ENST00000565688 FSTL4Q6MZW2 842 aa20.01■□□□□ 0.79
CLN3-218ENST00000565688 WDR5BQ86VZ2 330 aa20.01■□□□□ 0.79
CLN3-218ENST00000565688 HSCBQ8IWL3 235 aa20.01■□□□□ 0.79
CLN3-218ENST00000565688 MYCBPAPQ8TBZ2 947 aa20.01■□□□□ 0.79
CLN3-218ENST00000565688 OSCP1Q8WVF1 389 aa20.01■□□□□ 0.79
CLN3-218ENST00000565688 FOXD4L4Q8WXT5 416 aaPredicted RBP20.01■□□□□ 0.79
CLN3-218ENST00000565688 ATP2A3Q93084 1043 aa20.01■□□□□ 0.79
CLN3-218ENST00000565688 SNX25Q9H3E2 840 aa20.01■□□□□ 0.79
CLN3-218ENST00000565688 CRTAC1Q9NQ79 661 aa20.01■□□□□ 0.79
CLN3-218ENST00000565688 DUS2Q9NX74 493 aaKnown RBP20.01■□□□□ 0.79
CLN3-218ENST00000565688 CDV3Q9UKY7 258 aaKnown RBP20.01■□□□□ 0.79
CLN3-218ENST00000565688 TRIM66O15016 1216 aa20■□□□□ 0.79
CLN3-218ENST00000565688 CLIC2O15247 247 aa20■□□□□ 0.79
CLN3-218ENST00000565688 F13A1P00488 732 aa20■□□□□ 0.79
CLN3-218ENST00000565688 PDGFRBP09619 1106 aa20■□□□□ 0.79
CLN3-218ENST00000565688 BDNFP23560 247 aa20■□□□□ 0.79
CLN3-218ENST00000565688 GNL1P36915 607 aaPredicted RBP20■□□□□ 0.79
CLN3-218ENST00000565688 TNNC1P63316 161 aa20■□□□□ 0.79
CLN3-218ENST00000565688 CYP27A1Q02318 531 aa20■□□□□ 0.79
CLN3-218ENST00000565688 ARHGAP30Q7Z6I6 1101 aaPredicted RBP20■□□□□ 0.79
CLN3-218ENST00000565688 NELFCDQ8IXH7 590 aa20■□□□□ 0.79
CLN3-218ENST00000565688 C12orf56Q8IXR9 622 aa20■□□□□ 0.79
CLN3-218ENST00000565688 RIN3Q8TB24 985 aa20■□□□□ 0.79
CLN3-218ENST00000565688 GOLGA5Q8TBA6 731 aa20■□□□□ 0.79
CLN3-218ENST00000565688 CCDC127Q96BQ5 260 aa20■□□□□ 0.79
CLN3-218ENST00000565688 CHFRQ96EP1 664 aa20■□□□□ 0.79
CLN3-218ENST00000565688 CYP2S1Q96SQ9 504 aa20■□□□□ 0.79
CLN3-218ENST00000565688 PARD6AQ9NPB6 346 aa20■□□□□ 0.79
CLN3-218ENST00000565688 C2orf42Q9NWW7 574 aa20■□□□□ 0.79
CLN3-218ENST00000565688 GCNT4Q9P109 453 aa20■□□□□ 0.79
CLN3-218ENST00000565688 CFAP45Q9UL16 551 aa20■□□□□ 0.79
CLN3-218ENST00000565688 NCOR2Q9Y618 2525 aa19.99■□□□□ 0.79
CLN3-218ENST00000565688 CCDC163A0A0D9SF12 145 aa19.99■□□□□ 0.79
CLN3-218ENST00000565688 STAU1O95793 577 aaKnown RBP19.99■□□□□ 0.79
CLN3-218ENST00000565688 CST3P01034 146 aaPredicted RBP19.99■□□□□ 0.79
CLN3-218ENST00000565688 TCF3P15923 654 aa19.99■□□□□ 0.79
CLN3-218ENST00000565688 HDCP19113 662 aa19.99■□□□□ 0.79
CLN3-218ENST00000565688 PPP3CCP48454 512 aa19.99■□□□□ 0.79
CLN3-218ENST00000565688 IFNAR2P48551 515 aa19.99■□□□□ 0.79
CLN3-218ENST00000565688 SPEM2Q0P670 501 aa19.99■□□□□ 0.79
CLN3-218ENST00000565688 USP4Q13107 963 aa19.99■□□□□ 0.79
CLN3-218ENST00000565688 TRPC3Q13507 836 aa19.99■□□□□ 0.79
CLN3-218ENST00000565688 KNOP1Q1ED39 458 aaKnown RBP19.99■□□□□ 0.79
CLN3-218ENST00000565688 FBXO43Q4G163 708 aa19.99■□□□□ 0.79
CLN3-218ENST00000565688 RESP18Q5W5W9 173 aa19.99■□□□□ 0.79
CLN3-218ENST00000565688 DENND5BQ6ZUT9 1274 aa19.99■□□□□ 0.79
CLN3-218ENST00000565688 CEP68Q76N32 757 aa19.99■□□□□ 0.79
CLN3-218ENST00000565688 ARL14EPQ8N8R7 260 aaPredicted RBP19.99■□□□□ 0.79
CLN3-218ENST00000565688 PCED1BQ96HM7 432 aa19.99■□□□□ 0.79
CLN3-218ENST00000565688 SLC22A12Q96S37 553 aa19.99■□□□□ 0.79
CLN3-218ENST00000565688 P2RY13Q9BPV8 354 aa19.99■□□□□ 0.79
CLN3-218ENST00000565688 BLZF1Q9H2G9 400 aa19.99■□□□□ 0.79
CLN3-218ENST00000565688 ECT2Q9H8V3 914 aa19.99■□□□□ 0.79
CLN3-218ENST00000565688 TRPM5Q9NZQ8 1165 aa19.99■□□□□ 0.79
CLN3-218ENST00000565688 PCDHA7Q9UN72 937 aa19.99■□□□□ 0.79
CLN3-218ENST00000565688 ARHGAP26Q9UNA1 814 aa19.99■□□□□ 0.79
CLN3-218ENST00000565688 SLC8A2Q9UPR5 921 aa19.99■□□□□ 0.79
CLN3-218ENST00000565688 MED19A0JLT2 244 aaPredicted RBP19.98■□□□□ 0.79
CLN3-218ENST00000565688 C2orf78A6NCI8 922 aa19.98■□□□□ 0.79
CLN3-218ENST00000565688 FOXD2O60548 495 aaPredicted RBP19.98■□□□□ 0.79
CLN3-218ENST00000565688 ATICP31939 592 aa19.98■□□□□ 0.79
CLN3-218ENST00000565688 GJA4P35212 333 aa19.98■□□□□ 0.79
CLN3-218ENST00000565688 GALK1P51570 392 aa19.98■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms