RNA–Protein interactions for RNA: ENST00000561623.5

GTF3C1-202, Transcript of general transcription factor IIIC subunit 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene GTF3C1, Length 7,015 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3C1-202ENST00000561623 FCGRTP55899 365 aa10.6□□□□□ -0.71
GTF3C1-202ENST00000561623 SCFD1Q8WVM8 642 aa10.6□□□□□ -0.71
GTF3C1-202ENST00000561623 SMAD5Q99717 465 aaKnown RBP10.6□□□□□ -0.71
GTF3C1-202ENST00000561623 RUSC1Q9BVN2 902 aa10.6□□□□□ -0.71
GTF3C1-202ENST00000561623 WDR35Q9P2L0 1181 aa10.6□□□□□ -0.71
GTF3C1-202ENST00000561623 GPSM2P81274 684 aa10.59□□□□□ -0.71
GTF3C1-202ENST00000561623 FAM180AQ6UWF9 173 aa10.59□□□□□ -0.71
GTF3C1-202ENST00000561623 BRINP3Q76B58 766 aa10.59□□□□□ -0.71
GTF3C1-202ENST00000561623 MFN1Q8IWA4 741 aa10.59□□□□□ -0.71
GTF3C1-202ENST00000561623 SHCBP1Q8NEM2 672 aa10.59□□□□□ -0.71
GTF3C1-202ENST00000561623 TRAPPC9Q96Q05 1148 aa10.59□□□□□ -0.71
GTF3C1-202ENST00000561623 SNX9Q9Y5X1 595 aa10.59□□□□□ -0.71
GTF3C1-202ENST00000561623 NBNO60934 754 aa10.59□□□□□ -0.71
GTF3C1-202ENST00000561623 PDGFRBP09619 1106 aa10.59□□□□□ -0.71
GTF3C1-202ENST00000561623 NNMTP40261 264 aa10.59□□□□□ -0.71
GTF3C1-202ENST00000561623 HSD17B4P51659 736 aa10.59□□□□□ -0.71
GTF3C1-202ENST00000561623 RPL10AP62906 217 aaKnown RBP10.59□□□□□ -0.71
GTF3C1-202ENST00000561623 RERGLQ9H628 205 aa10.59□□□□□ -0.71
GTF3C1-202ENST00000561623 CNGB3Q9NQW8 809 aa10.59□□□□□ -0.71
GTF3C1-202ENST00000561623 GDF3Q9NR23 364 aa10.59□□□□□ -0.71
GTF3C1-202ENST00000561623 CLTCL1P53675 1640 aa10.59□□□□□ -0.71
GTF3C1-202ENST00000561623 FKBP6O75344 327 aa10.59□□□□□ -0.71
GTF3C1-202ENST00000561623 GPD1P21695 349 aa10.59□□□□□ -0.71
GTF3C1-202ENST00000561623 RPL21P46778 160 aaKnown RBP10.59□□□□□ -0.71
GTF3C1-202ENST00000561623 SERPINB8P50452 374 aa10.59□□□□□ -0.71
GTF3C1-202ENST00000561623 TBX2Q13207 712 aaPredicted RBP10.59□□□□□ -0.71
GTF3C1-202ENST00000561623 PRR23CQ6ZRP0 262 aa10.59□□□□□ -0.71
GTF3C1-202ENST00000561623 PLEKHM3Q6ZWE6 761 aa10.59□□□□□ -0.71
GTF3C1-202ENST00000561623 CATSPER2Q96P56 530 aa10.59□□□□□ -0.71
GTF3C1-202ENST00000561623 USE1Q9NZ43 259 aa10.59□□□□□ -0.71
GTF3C1-202ENST00000561623 ZNF212Q9UDV6 495 aa10.59□□□□□ -0.71
GTF3C1-202ENST00000561623 FAM32AQ9Y421 112 aaKnown RBP10.59□□□□□ -0.71
GTF3C1-202ENST00000561623 C1orf232A0A0U1RR37 186 aa10.59□□□□□ -0.71
GTF3C1-202ENST00000561623 TRPC5OSA6NMA1 111 aa10.59□□□□□ -0.71
GTF3C1-202ENST00000561623 RNF103O00237 685 aa10.59□□□□□ -0.71
GTF3C1-202ENST00000561623 RAG1P15918 1043 aa10.59□□□□□ -0.71
GTF3C1-202ENST00000561623 PPIDQ08752 370 aaKnown RBP10.59□□□□□ -0.71
GTF3C1-202ENST00000561623 BTBD8Q5XKL5 378 aa10.59□□□□□ -0.71
GTF3C1-202ENST00000561623 DDX53Q86TM3 631 aaKnown RBP10.59□□□□□ -0.71
GTF3C1-202ENST00000561623 ATPAF2Q8N5M1 289 aa10.59□□□□□ -0.71
GTF3C1-202ENST00000561623 ASAP3Q8TDY4 903 aa10.59□□□□□ -0.71
GTF3C1-202ENST00000561623 ASIC4Q96FT7 647 aa10.59□□□□□ -0.71
GTF3C1-202ENST00000561623 EFCAB1Q9HAE3 211 aa10.59□□□□□ -0.71
GTF3C1-202ENST00000561623 PSTPIP1O43586 416 aa10.59□□□□□ -0.71
GTF3C1-202ENST00000561623 GLRA3O75311 464 aa10.59□□□□□ -0.71
GTF3C1-202ENST00000561623 PTPN7P35236 360 aa10.59□□□□□ -0.71
GTF3C1-202ENST00000561623 STX5Q13190 355 aa10.59□□□□□ -0.71
GTF3C1-202ENST00000561623 MAPK11Q15759 364 aa10.59□□□□□ -0.71
GTF3C1-202ENST00000561623 TRMT5Q32P41 509 aaKnown RBP10.59□□□□□ -0.71
GTF3C1-202ENST00000561623 ADGRA3Q8IWK6 1321 aa10.59□□□□□ -0.71
GTF3C1-202ENST00000561623 PARNO95453 639 aaKnown RBP10.58□□□□□ -0.71
GTF3C1-202ENST00000561623 ADARP55265 1226 aaKnown RBP10.58□□□□□ -0.71
GTF3C1-202ENST00000561623 GTF2H3Q13889 308 aa10.58□□□□□ -0.71
GTF3C1-202ENST00000561623 ACCSLQ4AC99 568 aa10.58□□□□□ -0.71
GTF3C1-202ENST00000561623 PCNX4Q63HM2 1172 aa10.58□□□□□ -0.71
GTF3C1-202ENST00000561623 AGPAT3Q9NRZ7 376 aa10.58□□□□□ -0.71
GTF3C1-202ENST00000561623 BTBD7Q9P203 1132 aa10.58□□□□□ -0.71
GTF3C1-202ENST00000561623 GLI2P10070 1586 aa10.58□□□□□ -0.72
GTF3C1-202ENST00000561623 ST3GAL1Q11201 340 aa10.58□□□□□ -0.72
GTF3C1-202ENST00000561623 ORC1Q13415 861 aa10.58□□□□□ -0.72
GTF3C1-202ENST00000561623 THEMIS2Q5TEJ8 643 aa10.58□□□□□ -0.72
GTF3C1-202ENST00000561623 MIER2Q8N344 545 aa10.58□□□□□ -0.72
GTF3C1-202ENST00000561623 STX19Q8N4C7 294 aa10.58□□□□□ -0.72
GTF3C1-202ENST00000561623 POU5F2Q8N7G0 328 aa10.58□□□□□ -0.72
GTF3C1-202ENST00000561623 JPH1Q9HDC5 661 aaPredicted RBP10.58□□□□□ -0.72
GTF3C1-202ENST00000561623 DYRK4Q9NR20 520 aa10.58□□□□□ -0.72
GTF3C1-202ENST00000561623 DCDC2CA8MYV0 355 aa10.58□□□□□ -0.72
GTF3C1-202ENST00000561623 FCHO1O14526 889 aa10.58□□□□□ -0.72
GTF3C1-202ENST00000561623 SARSP49591 514 aaKnown RBP10.58□□□□□ -0.72
GTF3C1-202ENST00000561623 PTENP60484 403 aa10.58□□□□□ -0.72
GTF3C1-202ENST00000561623 SGSM1Q2NKQ1 1148 aa10.58□□□□□ -0.72
GTF3C1-202ENST00000561623 ZBTB49Q6ZSB9 765 aa10.58□□□□□ -0.72
GTF3C1-202ENST00000561623 MTERF3Q96E29 417 aa10.58□□□□□ -0.72
GTF3C1-202ENST00000561623 SPATA33Q96N06 139 aa10.58□□□□□ -0.72
GTF3C1-202ENST00000561623 ECSITQ9BQ95 431 aa10.58□□□□□ -0.72
GTF3C1-202ENST00000561623 TRIM54Q9BYV2 358 aa10.58□□□□□ -0.72
GTF3C1-202ENST00000561623 VPS33BQ9H267 617 aa10.58□□□□□ -0.72
GTF3C1-202ENST00000561623 PIF1Q9H611 641 aa10.58□□□□□ -0.72
GTF3C1-202ENST00000561623 NSMCE4AQ9NXX6 385 aa10.58□□□□□ -0.72
GTF3C1-202ENST00000561623 QRICH2Q9H0J4 1663 aa10.58□□□□□ -0.72
GTF3C1-202ENST00000561623 SMAPO00193 183 aa10.58□□□□□ -0.72
GTF3C1-202ENST00000561623 AP3B1O00203 1094 aa10.58□□□□□ -0.72
GTF3C1-202ENST00000561623 PWP1Q13610 501 aa10.58□□□□□ -0.72
GTF3C1-202ENST00000561623 ATXN2LQ8WWM7 1075 aaKnown RBP10.58□□□□□ -0.72
GTF3C1-202ENST00000561623 COQ7Q99807 217 aa10.58□□□□□ -0.72
GTF3C1-202ENST00000561623 TMEM245Q9H330 911 aa10.58□□□□□ -0.72
GTF3C1-202ENST00000561623 CTNNAL1Q9UBT7 734 aa10.58□□□□□ -0.72
GTF3C1-202ENST00000561623 RUVBL2Q9Y230 463 aaKnown RBP10.58□□□□□ -0.72
GTF3C1-202ENST00000561623 CDC42BPGQ6DT37 1551 aa10.58□□□□□ -0.72
GTF3C1-202ENST00000561623 CYTH3O43739 400 aa10.58□□□□□ -0.72
GTF3C1-202ENST00000561623 C6orf222P0C671 652 aaPredicted RBP10.58□□□□□ -0.72
GTF3C1-202ENST00000561623 CYP19A1P11511 503 aaPredicted RBP10.58□□□□□ -0.72
GTF3C1-202ENST00000561623 PTK2BQ14289 1009 aa10.58□□□□□ -0.72
GTF3C1-202ENST00000561623 KCTD19Q17RG1 926 aaPredicted RBP10.58□□□□□ -0.72
GTF3C1-202ENST00000561623 PABPC5Q96DU9 382 aaKnown RBP10.58□□□□□ -0.72
GTF3C1-202ENST00000561623 TMA7Q9Y2S6 64 aaKnown RBP10.58□□□□□ -0.72
GTF3C1-202ENST00000561623 FLT1P17948 1338 aa10.58□□□□□ -0.72
GTF3C1-202ENST00000561623 SPDYE5A6NIY4 337 aa10.58□□□□□ -0.72
GTF3C1-202ENST00000561623 SPDYE7PQ495Y7 208 aa10.58□□□□□ -0.72
GTF3C1-202ENST00000561623 FIGNQ5HY92 759 aa10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms