RNA–Protein interactions for RNA: ENST00000557455.1

CCDC88C-213, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 811 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-213ENST00000557455 MAPRE1Q15691 268 aaKnown RBP11.85□□□□□ -0.51
CCDC88C-213ENST00000557455 SNRNP35Q16560 246 aaKnown RBP11.85□□□□□ -0.51
CCDC88C-213ENST00000557455 FAM26FQ5R3K3 315 aa11.85□□□□□ -0.51
CCDC88C-213ENST00000557455 FSTL4Q6MZW2 842 aa11.85□□□□□ -0.51
CCDC88C-213ENST00000557455 SHC4Q6S5L8 630 aa11.85□□□□□ -0.51
CCDC88C-213ENST00000557455 CEP68Q76N32 757 aa11.85□□□□□ -0.51
CCDC88C-213ENST00000557455 EPM2AIP1Q7L775 607 aaPredicted RBP11.85□□□□□ -0.51
CCDC88C-213ENST00000557455 TRAPPC11Q7Z392 1133 aa11.85□□□□□ -0.51
CCDC88C-213ENST00000557455 LIMS2Q7Z4I7 341 aa11.85□□□□□ -0.51
CCDC88C-213ENST00000557455 WDR5BQ86VZ2 330 aa11.85□□□□□ -0.51
CCDC88C-213ENST00000557455 CPA6Q8N4T0 437 aa11.85□□□□□ -0.51
CCDC88C-213ENST00000557455 RDH13Q8NBN7 331 aa11.85□□□□□ -0.51
CCDC88C-213ENST00000557455 RIN3Q8TB24 985 aa11.85□□□□□ -0.51
CCDC88C-213ENST00000557455 KBTBD7Q8WVZ9 684 aa11.85□□□□□ -0.51
CCDC88C-213ENST00000557455 MYLPFQ96A32 169 aa11.85□□□□□ -0.51
CCDC88C-213ENST00000557455 EXOC4Q96A65 974 aa11.85□□□□□ -0.51
CCDC88C-213ENST00000557455 FNBP1Q96RU3 617 aa11.85□□□□□ -0.51
CCDC88C-213ENST00000557455 CYP2S1Q96SQ9 504 aa11.85□□□□□ -0.51
CCDC88C-213ENST00000557455 MMS19Q96T76 1030 aa11.85□□□□□ -0.51
CCDC88C-213ENST00000557455 DUS2Q9NX74 493 aaKnown RBP11.85□□□□□ -0.51
CCDC88C-213ENST00000557455 SLC8A2Q9UPR5 921 aa11.85□□□□□ -0.51
CCDC88C-213ENST00000557455 KIAA1549LQ6ZVL6 1849 aa11.84□□□□□ -0.51
CCDC88C-213ENST00000557455 CLIC2O15247 247 aa11.84□□□□□ -0.51
CCDC88C-213ENST00000557455 EGFP01133 1207 aa11.84□□□□□ -0.51
CCDC88C-213ENST00000557455 PDGFRBP09619 1106 aa11.84□□□□□ -0.51
CCDC88C-213ENST00000557455 DLATP10515 647 aaKnown RBP11.84□□□□□ -0.51
CCDC88C-213ENST00000557455 DRD1P21728 446 aa11.84□□□□□ -0.51
CCDC88C-213ENST00000557455 WARSP23381 471 aaKnown RBP11.84□□□□□ -0.51
CCDC88C-213ENST00000557455 BDNFP23560 247 aa11.84□□□□□ -0.51
CCDC88C-213ENST00000557455 ANXA13P27216 316 aa11.84□□□□□ -0.51
CCDC88C-213ENST00000557455 GJA4P35212 333 aa11.84□□□□□ -0.51
CCDC88C-213ENST00000557455 IFNAR2P48551 515 aa11.84□□□□□ -0.51
CCDC88C-213ENST00000557455 GALK1P51570 392 aa11.84□□□□□ -0.51
CCDC88C-213ENST00000557455 CYP2J2P51589 502 aa11.84□□□□□ -0.51
CCDC88C-213ENST00000557455 CYP27A1Q02318 531 aa11.84□□□□□ -0.51
CCDC88C-213ENST00000557455 KCNB1Q14721 858 aa11.84□□□□□ -0.51
CCDC88C-213ENST00000557455 ZNF77Q15935 545 aa11.84□□□□□ -0.51
CCDC88C-213ENST00000557455 FOXD4L5Q5VV16 416 aaPredicted RBP11.84□□□□□ -0.51
CCDC88C-213ENST00000557455 CNNM4Q6P4Q7 775 aa11.84□□□□□ -0.51
CCDC88C-213ENST00000557455 PKN3Q6P5Z2 889 aa11.84□□□□□ -0.51
CCDC88C-213ENST00000557455 VSTM1Q6UX27 236 aa11.84□□□□□ -0.51
CCDC88C-213ENST00000557455 UNC13DQ70J99 1090 aa11.84□□□□□ -0.51
CCDC88C-213ENST00000557455 HS2ST1Q7LGA3 356 aa11.84□□□□□ -0.51
CCDC88C-213ENST00000557455 NELFCDQ8IXH7 590 aa11.84□□□□□ -0.51
CCDC88C-213ENST00000557455 OSCP1Q8WVF1 389 aa11.84□□□□□ -0.51
CCDC88C-213ENST00000557455 FOXD4L4Q8WXT5 416 aaPredicted RBP11.84□□□□□ -0.51
CCDC88C-213ENST00000557455 CHFRQ96EP1 664 aa11.84□□□□□ -0.51
CCDC88C-213ENST00000557455 SPATA17Q96L03 361 aa11.84□□□□□ -0.51
CCDC88C-213ENST00000557455 SLC22A12Q96S37 553 aa11.84□□□□□ -0.51
CCDC88C-213ENST00000557455 CGRRF1Q99675 332 aa11.84□□□□□ -0.51
CCDC88C-213ENST00000557455 P2RY13Q9BPV8 354 aa11.84□□□□□ -0.51
CCDC88C-213ENST00000557455 C7orf25Q9BPX7 421 aa11.84□□□□□ -0.51
CCDC88C-213ENST00000557455 RTKNQ9BST9 563 aa11.84□□□□□ -0.51
CCDC88C-213ENST00000557455 ECT2Q9H8V3 914 aa11.84□□□□□ -0.51
CCDC88C-213ENST00000557455 MAGEF1Q9HAY2 307 aa11.84□□□□□ -0.51
CCDC88C-213ENST00000557455 CRTAC1Q9NQ79 661 aa11.84□□□□□ -0.51
CCDC88C-213ENST00000557455 AGPAT3Q9NRZ7 376 aa11.84□□□□□ -0.51
CCDC88C-213ENST00000557455 SEMA4GQ9NTN9 838 aa11.84□□□□□ -0.51
CCDC88C-213ENST00000557455 DYNC1LI1Q9Y6G9 523 aaKnown RBP11.84□□□□□ -0.51
CCDC88C-213ENST00000557455 UBE4BO95155 1302 aa11.84□□□□□ -0.51
CCDC88C-213ENST00000557455 C2orf78A6NCI8 922 aa11.83□□□□□ -0.52
CCDC88C-213ENST00000557455 POLR2DO15514 142 aaKnown RBP11.83□□□□□ -0.52
CCDC88C-213ENST00000557455 TGFB1I1O43294 461 aa11.83□□□□□ -0.52
CCDC88C-213ENST00000557455 RNF40O75150 1001 aa11.83□□□□□ -0.52
CCDC88C-213ENST00000557455 CST3P01034 146 aaPredicted RBP11.83□□□□□ -0.52
CCDC88C-213ENST00000557455 HDCP19113 662 aa11.83□□□□□ -0.52
CCDC88C-213ENST00000557455 HOXC13P31276 330 aa11.83□□□□□ -0.52
CCDC88C-213ENST00000557455 GNL1P36915 607 aaPredicted RBP11.83□□□□□ -0.52
CCDC88C-213ENST00000557455 PDE6CP51160 858 aa11.83□□□□□ -0.52
CCDC88C-213ENST00000557455 SNRPFP62306 86 aaKnown RBP11.83□□□□□ -0.52
CCDC88C-213ENST00000557455 TNNC1P63316 161 aa11.83□□□□□ -0.52
CCDC88C-213ENST00000557455 USP4Q13107 963 aa11.83□□□□□ -0.52
CCDC88C-213ENST00000557455 PSMD6Q15008 389 aa11.83□□□□□ -0.52
CCDC88C-213ENST00000557455 CSRP2Q16527 193 aa11.83□□□□□ -0.52
CCDC88C-213ENST00000557455 FOXD4L6Q3SYB3 417 aaPredicted RBP11.83□□□□□ -0.52
CCDC88C-213ENST00000557455 FBXO43Q4G163 708 aa11.83□□□□□ -0.52
CCDC88C-213ENST00000557455 FOXD4L3Q6VB84 417 aaPredicted RBP11.83□□□□□ -0.52
CCDC88C-213ENST00000557455 DENND5BQ6ZUT9 1274 aa11.83□□□□□ -0.52
CCDC88C-213ENST00000557455 FAM160A2Q8N612 972 aaPredicted RBP11.83□□□□□ -0.52
CCDC88C-213ENST00000557455 ARL14EPQ8N8R7 260 aaPredicted RBP11.83□□□□□ -0.52
CCDC88C-213ENST00000557455 XXYLT1Q8NBI6 393 aa11.83□□□□□ -0.52
CCDC88C-213ENST00000557455 MYCBPAPQ8TBZ2 947 aa11.83□□□□□ -0.52
CCDC88C-213ENST00000557455 ATP2A3Q93084 1043 aa11.83□□□□□ -0.52
CCDC88C-213ENST00000557455 CCDC127Q96BQ5 260 aa11.83□□□□□ -0.52
CCDC88C-213ENST00000557455 PCED1BQ96HM7 432 aa11.83□□□□□ -0.52
CCDC88C-213ENST00000557455 CEP295NLQ96MC4 621 aa11.83□□□□□ -0.52
CCDC88C-213ENST00000557455 BLZF1Q9H2G9 400 aa11.83□□□□□ -0.52
CCDC88C-213ENST00000557455 SNX25Q9H3E2 840 aa11.83□□□□□ -0.52
CCDC88C-213ENST00000557455 FBRSL1Q9HCM7 1045 aaKnown RBP11.83□□□□□ -0.52
CCDC88C-213ENST00000557455 FAM13BQ9NYF5 915 aa11.83□□□□□ -0.52
CCDC88C-213ENST00000557455 EHD2Q9NZN4 543 aa11.83□□□□□ -0.52
CCDC88C-213ENST00000557455 TRPM5Q9NZQ8 1165 aa11.83□□□□□ -0.52
CCDC88C-213ENST00000557455 GCNT4Q9P109 453 aa11.83□□□□□ -0.52
CCDC88C-213ENST00000557455 WNT6Q9Y6F9 365 aa11.83□□□□□ -0.52
CCDC88C-213ENST00000557455 MYH10P35580 1976 aa11.82□□□□□ -0.52
CCDC88C-213ENST00000557455 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.82□□□□□ -0.52
CCDC88C-213ENST00000557455 CCDC163A0A0D9SF12 145 aa11.82□□□□□ -0.52
CCDC88C-213ENST00000557455 LOC105378220A0A1B0GUY1 285 aaPredicted RBP11.82□□□□□ -0.52
CCDC88C-213ENST00000557455 DCDC2BA2VCK2 349 aa11.82□□□□□ -0.52
CCDC88C-213ENST00000557455 TRIM66O15016 1216 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms