RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 HOOK1Q9UJC3 728 aaKnown RBP10.96□□□□□ -0.65
CCDC88C-206ENST00000553437 MYO15AQ9UKN7 3530 aa10.96□□□□□ -0.65
CCDC88C-206ENST00000553437 DCHS1Q96JQ0 3298 aa10.96□□□□□ -0.66
CCDC88C-206ENST00000553437 TCHHQ07283 1943 aa10.96□□□□□ -0.66
CCDC88C-206ENST00000553437 KANSL1LA0AUZ9 987 aa10.95□□□□□ -0.66
CCDC88C-206ENST00000553437 TRIM49BA6NDI0 452 aa10.95□□□□□ -0.66
CCDC88C-206ENST00000553437 SOBPA7XYQ1 873 aa10.95□□□□□ -0.66
CCDC88C-206ENST00000553437 PPP1R3GB7ZBB8 358 aa10.95□□□□□ -0.66
CCDC88C-206ENST00000553437 STK25O00506 426 aa10.95□□□□□ -0.66
CCDC88C-206ENST00000553437 KINO60870 393 aaKnown RBP10.95□□□□□ -0.66
CCDC88C-206ENST00000553437 GDI1P31150 447 aa10.95□□□□□ -0.66
CCDC88C-206ENST00000553437 GTF2H1P32780 548 aa10.95□□□□□ -0.66
CCDC88C-206ENST00000553437 GRIK1P39086 918 aa10.95□□□□□ -0.66
CCDC88C-206ENST00000553437 USP46P62068 366 aa10.95□□□□□ -0.66
CCDC88C-206ENST00000553437 FKBP3Q00688 224 aaKnown RBP10.95□□□□□ -0.66
CCDC88C-206ENST00000553437 CYP27A1Q02318 531 aa10.95□□□□□ -0.66
CCDC88C-206ENST00000553437 MORC3Q14149 939 aa10.95□□□□□ -0.66
CCDC88C-206ENST00000553437 TXNDC8Q6A555 127 aa10.95□□□□□ -0.66
CCDC88C-206ENST00000553437 SCARA5Q6ZMJ2 495 aa10.95□□□□□ -0.66
CCDC88C-206ENST00000553437 PAQR9Q6ZVX9 377 aa10.95□□□□□ -0.66
CCDC88C-206ENST00000553437 MON1AQ86VX9 555 aa10.95□□□□□ -0.66
CCDC88C-206ENST00000553437 CMTM8Q8IZV2 173 aa10.95□□□□□ -0.66
CCDC88C-206ENST00000553437 B3GALNT2Q8NCR0 500 aa10.95□□□□□ -0.66
CCDC88C-206ENST00000553437 SEMA4DQ92854 862 aa10.95□□□□□ -0.66
CCDC88C-206ENST00000553437 DNASE1L2Q92874 299 aa10.95□□□□□ -0.66
CCDC88C-206ENST00000553437 SHDQ96IW2 340 aa10.95□□□□□ -0.66
CCDC88C-206ENST00000553437 C8orf48Q96LL4 319 aa10.95□□□□□ -0.66
CCDC88C-206ENST00000553437 CEP295NLQ96MC4 621 aa10.95□□□□□ -0.66
CCDC88C-206ENST00000553437 GCNAQ96QF7 691 aa10.95□□□□□ -0.66
CCDC88C-206ENST00000553437 BCO2Q9BYV7 579 aa10.95□□□□□ -0.66
CCDC88C-206ENST00000553437 BRD9Q9H8M2 597 aa10.95□□□□□ -0.66
CCDC88C-206ENST00000553437 TMEM8AQ9HCN3 771 aa10.95□□□□□ -0.66
CCDC88C-206ENST00000553437 HEBP1Q9NRV9 189 aa10.95□□□□□ -0.66
CCDC88C-206ENST00000553437 OBP2AQ9NY56 170 aa10.95□□□□□ -0.66
CCDC88C-206ENST00000553437 HMGXB4Q9UGU5 601 aa10.95□□□□□ -0.66
CCDC88C-206ENST00000553437 ZMYM5Q9UJ78 669 aa10.95□□□□□ -0.66
CCDC88C-206ENST00000553437 MAGED2Q9UNF1 606 aaPredicted RBP10.95□□□□□ -0.66
CCDC88C-206ENST00000553437 SIT1Q9Y3P8 196 aa10.95□□□□□ -0.66
CCDC88C-206ENST00000553437 MTF2Q9Y483 593 aaPredicted RBP10.95□□□□□ -0.66
CCDC88C-206ENST00000553437 WDR87Q6ZQQ6 2873 aa10.95□□□□□ -0.66
CCDC88C-206ENST00000553437 F8VP50 259 aa10.94□□□□□ -0.66
CCDC88C-206ENST00000553437 CLDN5O00501 218 aa10.94□□□□□ -0.66
CCDC88C-206ENST00000553437 ZNF263O14978 683 aa10.94□□□□□ -0.66
CCDC88C-206ENST00000553437 CHADO15335 359 aa10.94□□□□□ -0.66
CCDC88C-206ENST00000553437 SLC16A3O15427 465 aaKnown RBP10.94□□□□□ -0.66
CCDC88C-206ENST00000553437 DCNP07585 359 aaKnown RBP10.94□□□□□ -0.66
CCDC88C-206ENST00000553437 EPB41P11171 864 aaKnown RBP10.94□□□□□ -0.66
CCDC88C-206ENST00000553437 P4HA1P13674 534 aa10.94□□□□□ -0.66
CCDC88C-206ENST00000553437 GLULP15104 373 aa10.94□□□□□ -0.66
CCDC88C-206ENST00000553437 CD72P21854 359 aa10.94□□□□□ -0.66
CCDC88C-206ENST00000553437 CCNE1P24864 410 aa10.94□□□□□ -0.66
CCDC88C-206ENST00000553437 DDX6P26196 483 aaKnown RBP eCLIP10.94□□□□□ -0.665e-6■■■■■ 46.6
CCDC88C-206ENST00000553437 PIK3CAP42336 1068 aa10.94□□□□□ -0.66
CCDC88C-206ENST00000553437 UBE2HP62256 183 aa10.94□□□□□ -0.66
CCDC88C-206ENST00000553437 LRRC63Q05C16 580 aa10.94□□□□□ -0.66
CCDC88C-206ENST00000553437 FZD5Q13467 585 aa10.94□□□□□ -0.66
CCDC88C-206ENST00000553437 KRT39Q6A163 491 aa10.94□□□□□ -0.66
CCDC88C-206ENST00000553437 ZNF687Q8N1G0 1237 aa10.94□□□□□ -0.66
CCDC88C-206ENST00000553437 CRYBG2Q8N1P7 616 aa10.94□□□□□ -0.66
CCDC88C-206ENST00000553437 MAB21L3Q8N8X9 362 aa10.94□□□□□ -0.66
CCDC88C-206ENST00000553437 DTWD2Q8NBA8 298 aa10.94□□□□□ -0.66
CCDC88C-206ENST00000553437 PJA1Q8NG27 643 aa10.94□□□□□ -0.66
CCDC88C-206ENST00000553437 IRF7Q92985 503 aa10.94□□□□□ -0.66
CCDC88C-206ENST00000553437 USP13Q92995 863 aaPredicted RBP10.94□□□□□ -0.66
CCDC88C-206ENST00000553437 DHTKD1Q96HY7 919 aaPredicted RBP10.94□□□□□ -0.66
CCDC88C-206ENST00000553437 TSG101Q99816 390 aa10.94□□□□□ -0.66
CCDC88C-206ENST00000553437 DUSP9Q99956 384 aaKnown RBP10.94□□□□□ -0.66
CCDC88C-206ENST00000553437 ANP32EQ9BTT0 268 aa10.94□□□□□ -0.66
CCDC88C-206ENST00000553437 TTLL2Q9BWV7 592 aa10.94□□□□□ -0.66
CCDC88C-206ENST00000553437 SMG9Q9H0W8 520 aaKnown RBP10.94□□□□□ -0.66
CCDC88C-206ENST00000553437 LTB4R2Q9NPC1 389 aa10.94□□□□□ -0.66
CCDC88C-206ENST00000553437 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.94□□□□□ -0.664e-8■■■■■ 164
CCDC88C-206ENST00000553437 UXTQ9UBK9 157 aaPredicted RBP10.94□□□□□ -0.66
CCDC88C-206ENST00000553437 CCL26Q9Y258 94 aa10.94□□□□□ -0.66
CCDC88C-206ENST00000553437 DMDP11532 3685 aa10.94□□□□□ -0.66
CCDC88C-206ENST00000553437 H0Y858 1186 aa10.93□□□□□ -0.66
CCDC88C-206ENST00000553437 PSMA7O14818 248 aa10.93□□□□□ -0.66
CCDC88C-206ENST00000553437 TRIM66O15016 1216 aa10.93□□□□□ -0.66
CCDC88C-206ENST00000553437 TARSP26639 723 aaKnown RBP10.93□□□□□ -0.66
CCDC88C-206ENST00000553437 NDST1P52848 882 aa10.93□□□□□ -0.66
CCDC88C-206ENST00000553437 NOP14P78316 857 aaKnown RBP10.93□□□□□ -0.66
CCDC88C-206ENST00000553437 INCA1Q0VD86 236 aa10.93□□□□□ -0.66
CCDC88C-206ENST00000553437 ORC1Q13415 861 aa10.93□□□□□ -0.66
CCDC88C-206ENST00000553437 CBWD6Q4V339 395 aa10.93□□□□□ -0.66
CCDC88C-206ENST00000553437 CBWD3Q5JTY5 395 aa10.93□□□□□ -0.66
CCDC88C-206ENST00000553437 CBWD5Q5RIA9 395 aa10.93□□□□□ -0.66
CCDC88C-206ENST00000553437 TTI2Q6NXR4 508 aa10.93□□□□□ -0.66
CCDC88C-206ENST00000553437 TPRG1Q6ZUI0 275 aa10.93□□□□□ -0.66
CCDC88C-206ENST00000553437 DENND5BQ6ZUT9 1274 aa10.93□□□□□ -0.66
CCDC88C-206ENST00000553437 ACOT1Q86TX2 421 aa10.93□□□□□ -0.66
CCDC88C-206ENST00000553437 UNC93AQ86WB7 457 aa10.93□□□□□ -0.66
CCDC88C-206ENST00000553437 FUKQ8N0W3 1084 aa10.93□□□□□ -0.66
CCDC88C-206ENST00000553437 CELF5Q8N6W0 485 aaKnown RBP10.93□□□□□ -0.66
CCDC88C-206ENST00000553437 RIN3Q8TB24 985 aa10.93□□□□□ -0.66
CCDC88C-206ENST00000553437 BPIFB1Q8TDL5 484 aa10.93□□□□□ -0.66
CCDC88C-206ENST00000553437 WHAMMQ8TF30 809 aa10.93□□□□□ -0.66
CCDC88C-206ENST00000553437 MRPS31Q92665 395 aaKnown RBP10.93□□□□□ -0.66
CCDC88C-206ENST00000553437 TNIP3Q96KP6 325 aa10.93□□□□□ -0.66
CCDC88C-206ENST00000553437 TWNKQ96RR1 684 aa10.93□□□□□ -0.66
CCDC88C-206ENST00000553437 SLC22A12Q96S37 553 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms