RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 GMPSP49915 693 aaPredicted RBP7.87□□□□□ -1.15
LIMA1-213ENST00000552720 GEMIN4P57678 1058 aaKnown RBP7.87□□□□□ -1.15
LIMA1-213ENST00000552720 ZNF280AP59817 542 aaPredicted RBP7.87□□□□□ -1.15
LIMA1-213ENST00000552720 LACTBP83111 547 aaPredicted RBP7.87□□□□□ -1.15
LIMA1-213ENST00000552720 CCDC15Q0P6D6 951 aa7.87□□□□□ -1.15
LIMA1-213ENST00000552720 NR1H3Q13133 447 aa7.87□□□□□ -1.15
LIMA1-213ENST00000552720 TRPC3Q13507 836 aa7.87□□□□□ -1.15
LIMA1-213ENST00000552720 SETDB1Q15047 1291 aa7.87□□□□□ -1.15
LIMA1-213ENST00000552720 ZNF699Q32M78 642 aa7.87□□□□□ -1.15
LIMA1-213ENST00000552720 TAF1BQ53T94 588 aaPredicted RBP7.87□□□□□ -1.15
LIMA1-213ENST00000552720 LRRC38Q5VT99 294 aa7.87□□□□□ -1.15
LIMA1-213ENST00000552720 CATSPERGQ6ZRH7 1159 aa7.87□□□□□ -1.15
LIMA1-213ENST00000552720 MTDHQ86UE4 582 aaKnown RBP7.87□□□□□ -1.15
LIMA1-213ENST00000552720 WDR49Q8IV35 697 aa7.87□□□□□ -1.15
LIMA1-213ENST00000552720 NAT8LQ8N9F0 302 aa7.87□□□□□ -1.15
LIMA1-213ENST00000552720 RNF149Q8NC42 400 aa7.87□□□□□ -1.15
LIMA1-213ENST00000552720 CCHCR1Q8TD31 782 aa7.87□□□□□ -1.15
LIMA1-213ENST00000552720 JDP2Q8WYK2 163 aa7.87□□□□□ -1.15
LIMA1-213ENST00000552720 HSPH1Q92598 858 aa7.87□□□□□ -1.15
LIMA1-213ENST00000552720 MIEF2Q96C03 454 aa7.87□□□□□ -1.15
LIMA1-213ENST00000552720 NIFKQ9BYG3 293 aaKnown RBP7.87□□□□□ -1.15
LIMA1-213ENST00000552720 FAM117AQ9C073 453 aa7.87□□□□□ -1.15
LIMA1-213ENST00000552720 SDCBP2Q9H190 292 aa7.87□□□□□ -1.15
LIMA1-213ENST00000552720 XYLT2Q9H1B5 865 aa7.87□□□□□ -1.15
LIMA1-213ENST00000552720 LRMDAQ9H2I8 198 aa7.87□□□□□ -1.15
LIMA1-213ENST00000552720 TMEM134Q9H6X4 195 aa7.87□□□□□ -1.15
LIMA1-213ENST00000552720 PICK1Q9NRD5 415 aa7.87□□□□□ -1.15
LIMA1-213ENST00000552720 GINM1Q9NU53 330 aa7.87□□□□□ -1.15
LIMA1-213ENST00000552720 RYDENQ9NUL5 291 aaKnown RBP7.87□□□□□ -1.15
LIMA1-213ENST00000552720 SMG5Q9UPR3 1016 aaKnown RBP7.87□□□□□ -1.15
LIMA1-213ENST00000552720 CHMP2BQ9UQN3 213 aa7.87□□□□□ -1.15
LIMA1-213ENST00000552720 SNCAIPQ9Y6H5 919 aa7.87□□□□□ -1.15
LIMA1-213ENST00000552720 IGKV6D-21A0A0A0MT36 114 aa7.86□□□□□ -1.15
LIMA1-213ENST00000552720 C2orf71A6NGG8 1288 aa7.86□□□□□ -1.15
LIMA1-213ENST00000552720 ABLIM1O14639 778 aa7.86□□□□□ -1.15
LIMA1-213ENST00000552720 AVILO75366 819 aa7.86□□□□□ -1.15
LIMA1-213ENST00000552720 CSDE1O75534 798 aaKnown RBP7.86□□□□□ -1.15
LIMA1-213ENST00000552720 TOM1L1O75674 476 aa7.86□□□□□ -1.15
LIMA1-213ENST00000552720 STAM2O75886 525 aa7.86□□□□□ -1.15
LIMA1-213ENST00000552720 ERBB2P04626 1255 aa7.86□□□□□ -1.15
LIMA1-213ENST00000552720 KDELR1P24390 212 aa7.86□□□□□ -1.15
LIMA1-213ENST00000552720 TCF7P36402 384 aaPredicted RBP7.86□□□□□ -1.15
LIMA1-213ENST00000552720 GCLCP48506 637 aaPredicted RBP7.86□□□□□ -1.15
LIMA1-213ENST00000552720 STAT5BP51692 787 aa7.86□□□□□ -1.15
LIMA1-213ENST00000552720 PSMC1P62191 440 aaKnown RBP7.86□□□□□ -1.15
LIMA1-213ENST00000552720 BASP1P80723 227 aaKnown RBP7.86□□□□□ -1.15
LIMA1-213ENST00000552720 LY6KQ17RY6 165 aa7.86□□□□□ -1.15
LIMA1-213ENST00000552720 EEF1DP3Q658K8 133 aa7.86□□□□□ -1.15
LIMA1-213ENST00000552720 DPH6Q7L8W6 267 aa7.86□□□□□ -1.15
LIMA1-213ENST00000552720 NLRP9Q7RTR0 991 aa7.86□□□□□ -1.15
LIMA1-213ENST00000552720 RPAINQ86UA6 219 aa7.86□□□□□ -1.15
LIMA1-213ENST00000552720 ZC3H18Q86VM9 953 aaKnown RBP7.86□□□□□ -1.15
LIMA1-213ENST00000552720 LONP2Q86WA8 852 aa7.86□□□□□ -1.15
LIMA1-213ENST00000552720 LRRC6Q86X45 466 aa7.86□□□□□ -1.15
LIMA1-213ENST00000552720 CCDC125Q86Z20 511 aa7.86□□□□□ -1.15
LIMA1-213ENST00000552720 PPIL6Q8IXY8 311 aa7.86□□□□□ -1.15
LIMA1-213ENST00000552720 FAM13CQ8NE31 585 aa7.86□□□□□ -1.15
LIMA1-213ENST00000552720 TTC8Q8TAM2 541 aa7.86□□□□□ -1.15
LIMA1-213ENST00000552720 DCAKDQ8WVC6 231 aa7.86□□□□□ -1.15
LIMA1-213ENST00000552720 ACO2Q99798 780 aaKnown RBP7.86□□□□□ -1.15
LIMA1-213ENST00000552720 TBC1D10AQ9BXI6 508 aa7.86□□□□□ -1.15
LIMA1-213ENST00000552720 CALN1Q9BXU9 219 aa7.86□□□□□ -1.15
LIMA1-213ENST00000552720 ASCC2Q9H1I8 757 aaPredicted RBP7.86□□□□□ -1.15
LIMA1-213ENST00000552720 CYLDQ9NQC7 956 aa7.86□□□□□ -1.15
LIMA1-213ENST00000552720 TXLNGQ9NUQ3 528 aa7.86□□□□□ -1.15
LIMA1-213ENST00000552720 SLC24A2Q9UI40 661 aa7.86□□□□□ -1.15
LIMA1-213ENST00000552720 CPSF3Q9UKF6 684 aaKnown RBP7.86□□□□□ -1.15
LIMA1-213ENST00000552720 A0A0G2JMZ2 1700 aa7.86□□□□□ -1.15
LIMA1-213ENST00000552720 LRRC37A2A6NM11 1700 aa7.86□□□□□ -1.15
LIMA1-213ENST00000552720 H0Y3Z8 333 aa7.86□□□□□ -1.15
LIMA1-213ENST00000552720 ATP2A1O14983 1001 aa7.86□□□□□ -1.15
LIMA1-213ENST00000552720 PEX11AO75192 247 aa7.86□□□□□ -1.15
LIMA1-213ENST00000552720 ENTPD5O75356 428 aa7.86□□□□□ -1.15
LIMA1-213ENST00000552720 MAFO75444 373 aaPredicted RBP7.86□□□□□ -1.15
LIMA1-213ENST00000552720 FAM155BO75949 473 aa7.86□□□□□ -1.15
LIMA1-213ENST00000552720 ARIH2O95376 493 aa7.86□□□□□ -1.15
LIMA1-213ENST00000552720 LSM8O95777 96 aaKnown RBP7.86□□□□□ -1.15
LIMA1-213ENST00000552720 PRKCBP05771 671 aa7.86□□□□□ -1.15
LIMA1-213ENST00000552720 CXCL8P10145 99 aa7.86□□□□□ -1.15
LIMA1-213ENST00000552720 ATP2A2P16615 1042 aaKnown RBP7.86□□□□□ -1.15
LIMA1-213ENST00000552720 EIF4BP23588 611 aaKnown RBP7.86□□□□□ -1.15
LIMA1-213ENST00000552720 CDH5P33151 784 aaPredicted RBP7.86□□□□□ -1.15
LIMA1-213ENST00000552720 PTPN7P35236 360 aa7.86□□□□□ -1.15
LIMA1-213ENST00000552720 SKIV2L2P42285 1042 aaKnown RBP7.86□□□□□ -1.15
LIMA1-213ENST00000552720 OAZ1P54368 228 aa7.86□□□□□ -1.15
LIMA1-213ENST00000552720 ATP11AP98196 1134 aa7.86□□□□□ -1.15
LIMA1-213ENST00000552720 DUOXA2Q1HG44 320 aa7.86□□□□□ -1.15
LIMA1-213ENST00000552720 SGSM1Q2NKQ1 1148 aa7.86□□□□□ -1.15
LIMA1-213ENST00000552720 ANKRD20A2Q5SQ80 823 aa7.86□□□□□ -1.15
LIMA1-213ENST00000552720 ANKRD20A1Q5TYW2 823 aa7.86□□□□□ -1.15
LIMA1-213ENST00000552720 ANGEL2Q5VTE6 544 aaKnown RBP7.86□□□□□ -1.15
LIMA1-213ENST00000552720 ANKRD20A3Q5VUR7 823 aa7.86□□□□□ -1.15
LIMA1-213ENST00000552720 ADGRD1Q6QNK2 874 aa7.86□□□□□ -1.15
LIMA1-213ENST00000552720 RGS9BPQ6ZS82 235 aa7.86□□□□□ -1.15
LIMA1-213ENST00000552720 RFX6Q8HWS3 928 aa7.86□□□□□ -1.15
LIMA1-213ENST00000552720 PALM2Q8IXS6 379 aa7.86□□□□□ -1.15
LIMA1-213ENST00000552720 AGGF1Q8N302 714 aaeCLIP7.86□□□□□ -1.15
LIMA1-213ENST00000552720 NIPA2Q8N8Q9 360 aa7.86□□□□□ -1.15
LIMA1-213ENST00000552720 RSAD2Q8WXG1 361 aa7.86□□□□□ -1.15
LIMA1-213ENST00000552720 RSRC1Q96IZ7 334 aaKnown RBP7.86□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms