RNA–Protein interactions for RNA: ENST00000548658.1

BEST3-209, Transcript of bestrophin 3, humanhuman

TSL 5

Gene BEST3, Length 572 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3-209ENST00000548658 TDP1Q9NUW8 608 aa12.16□□□□□ -0.46
BEST3-209ENST00000548658 NXF1Q9UBU9 619 aaKnown RBP12.16□□□□□ -0.46
BEST3-209ENST00000548658 F5P12259 2224 aa12.15□□□□□ -0.46
BEST3-209ENST00000548658 PRR23AA6NEV1 266 aa12.15□□□□□ -0.46
BEST3-209ENST00000548658 A8MXQ7 604 aa12.15□□□□□ -0.46
BEST3-209ENST00000548658 ATP2C2O75185 946 aa12.15□□□□□ -0.46
BEST3-209ENST00000548658 LRRN2O75325 713 aa12.15□□□□□ -0.46
BEST3-209ENST00000548658 CLSTN1O94985 981 aa12.15□□□□□ -0.46
BEST3-209ENST00000548658 C4BPAP04003 597 aaKnown RBP12.15□□□□□ -0.46
BEST3-209ENST00000548658 PTPN1P18031 435 aaKnown RBP12.15□□□□□ -0.46
BEST3-209ENST00000548658 BDNFP23560 247 aa12.15□□□□□ -0.46
BEST3-209ENST00000548658 CCNE1P24864 410 aa12.15□□□□□ -0.46
BEST3-209ENST00000548658 GPR15P49685 360 aa12.15□□□□□ -0.46
BEST3-209ENST00000548658 CLCN6P51797 869 aa12.15□□□□□ -0.46
BEST3-209ENST00000548658 PSMC1P62191 440 aaKnown RBP12.15□□□□□ -0.46
BEST3-209ENST00000548658 LRRC32Q14392 662 aa12.15□□□□□ -0.46
BEST3-209ENST00000548658 ZNF268Q14587 947 aaPredicted RBP12.15□□□□□ -0.46
BEST3-209ENST00000548658 ZNF699Q32M78 642 aa12.15□□□□□ -0.46
BEST3-209ENST00000548658 ITPRIPL2Q3MIP1 535 aa12.15□□□□□ -0.46
BEST3-209ENST00000548658 CEP135Q66GS9 1140 aa12.15□□□□□ -0.46
BEST3-209ENST00000548658 TXNDC8Q6A555 127 aa12.15□□□□□ -0.46
BEST3-209ENST00000548658 DENND5BQ6ZUT9 1274 aa12.15□□□□□ -0.46
BEST3-209ENST00000548658 INTS8Q75QN2 995 aaKnown RBP12.15□□□□□ -0.46
BEST3-209ENST00000548658 TMEM150AQ86TG1 271 aa12.15□□□□□ -0.46
BEST3-209ENST00000548658 MYLPFQ96A32 169 aa12.15□□□□□ -0.46
BEST3-209ENST00000548658 EXOC4Q96A65 974 aa12.15□□□□□ -0.46
BEST3-209ENST00000548658 RSPRY1Q96DX4 576 aa12.15□□□□□ -0.46
BEST3-209ENST00000548658 PCED1BQ96HM7 432 aa12.15□□□□□ -0.46
BEST3-209ENST00000548658 TNIP3Q96KP6 325 aa12.15□□□□□ -0.46
BEST3-209ENST00000548658 C8orf48Q96LL4 319 aa12.15□□□□□ -0.46
BEST3-209ENST00000548658 MRPL45Q9BRJ2 306 aaKnown RBP12.15□□□□□ -0.46
BEST3-209ENST00000548658 GTPBP4Q9BZE4 634 aaKnown RBP12.15□□□□□ -0.46
BEST3-209ENST00000548658 ELOVL4Q9GZR5 314 aa12.15□□□□□ -0.46
BEST3-209ENST00000548658 GZF1Q9H116 711 aaPredicted RBP12.15□□□□□ -0.46
BEST3-209ENST00000548658 XYLT2Q9H1B5 865 aa12.15□□□□□ -0.46
BEST3-209ENST00000548658 RMND1Q9NWS8 449 aa12.15□□□□□ -0.46
BEST3-209ENST00000548658 HOOK1Q9UJC3 728 aaKnown RBP12.15□□□□□ -0.46
BEST3-209ENST00000548658 NDRG2Q9UN36 371 aaKnown RBP12.15□□□□□ -0.46
BEST3-209ENST00000548658 TRAV19A0A0A6YYK7 116 aa12.14□□□□□ -0.47
BEST3-209ENST00000548658 SHISA7A6NL88 538 aa12.14□□□□□ -0.47
BEST3-209ENST00000548658 LRRIQ3A6PVS8 624 aaPredicted RBP12.14□□□□□ -0.47
BEST3-209ENST00000548658 HCRTO43612 131 aa12.14□□□□□ -0.47
BEST3-209ENST00000548658 PRAMEF12O95522 483 aa12.14□□□□□ -0.47
BEST3-209ENST00000548658 LMNAP02545 664 aaKnown RBP12.14□□□□□ -0.47
BEST3-209ENST00000548658 USP17L7P0C7H9 530 aa12.14□□□□□ -0.47
BEST3-209ENST00000548658 KRT13P13646 458 aa12.14□□□□□ -0.47
BEST3-209ENST00000548658 NR2F2P24468 414 aa12.14□□□□□ -0.47
BEST3-209ENST00000548658 CASP4P49662 377 aa12.14□□□□□ -0.47
BEST3-209ENST00000548658 NRLP54845 237 aa12.14□□□□□ -0.47
BEST3-209ENST00000548658 NOP14P78316 857 aaKnown RBP12.14□□□□□ -0.47
BEST3-209ENST00000548658 FAM160A1Q05DH4 1040 aa12.14□□□□□ -0.47
BEST3-209ENST00000548658 FZD5Q13467 585 aa12.14□□□□□ -0.47
BEST3-209ENST00000548658 ZACNQ401N2 412 aa12.14□□□□□ -0.47
BEST3-209ENST00000548658 DGKKQ5KSL6 1271 aa12.14□□□□□ -0.47
BEST3-209ENST00000548658 SDHAF4Q5VUM1 108 aa12.14□□□□□ -0.47
BEST3-209ENST00000548658 TDRD10Q5VZ19 366 aaKnown RBP12.14□□□□□ -0.47
BEST3-209ENST00000548658 ASCL5Q7RTU5 278 aa12.14□□□□□ -0.47
BEST3-209ENST00000548658 GPIHBP1Q8IV16 184 aa12.14□□□□□ -0.47
BEST3-209ENST00000548658 ZNF687Q8N1G0 1237 aa12.14□□□□□ -0.47
BEST3-209ENST00000548658 SYNPOQ8N3V7 929 aa12.14□□□□□ -0.47
BEST3-209ENST00000548658 B3GALNT2Q8NCR0 500 aa12.14□□□□□ -0.47
BEST3-209ENST00000548658 ATRIPQ8WXE1 791 aa12.14□□□□□ -0.47
BEST3-209ENST00000548658 USP13Q92995 863 aaPredicted RBP12.14□□□□□ -0.47
BEST3-209ENST00000548658 CHAMP1Q96JM3 812 aa12.14□□□□□ -0.47
BEST3-209ENST00000548658 LRRC3BQ96PB8 259 aa12.14□□□□□ -0.47
BEST3-209ENST00000548658 IMPG2Q9BZV3 1241 aa12.14□□□□□ -0.47
BEST3-209ENST00000548658 DNAI2Q9GZS0 605 aa12.14□□□□□ -0.47
BEST3-209ENST00000548658 CHRDQ9H2X0 955 aa12.14□□□□□ -0.47
BEST3-209ENST00000548658 LMAN1LQ9HAT1 526 aa12.14□□□□□ -0.47
BEST3-209ENST00000548658 PCDHGA2Q9Y5H1 932 aa12.14□□□□□ -0.47
BEST3-209ENST00000548658 NUP210Q8TEM1 1887 aaPredicted RBP12.14□□□□□ -0.47
BEST3-209ENST00000548658 CACNA1IQ9P0X4 2223 aa12.14□□□□□ -0.47
BEST3-209ENST00000548658 ATP8B3O60423 1300 aa12.13□□□□□ -0.47
BEST3-209ENST00000548658 SPECC1L-ADORA2AF8WAN1 911 aa12.13□□□□□ -0.47
BEST3-209ENST00000548658 KINO60870 393 aaKnown RBP12.13□□□□□ -0.47
BEST3-209ENST00000548658 CKMP06732 381 aa12.13□□□□□ -0.47
BEST3-209ENST00000548658 CHRNB1P11230 501 aa12.13□□□□□ -0.47
BEST3-209ENST00000548658 HDCP19113 662 aa12.13□□□□□ -0.47
BEST3-209ENST00000548658 CTHP32929 405 aa12.13□□□□□ -0.47
BEST3-209ENST00000548658 PSMC2P35998 433 aaKnown RBP12.13□□□□□ -0.47
BEST3-209ENST00000548658 CCR3P51677 355 aa12.13□□□□□ -0.47
BEST3-209ENST00000548658 VAMP7P51809 220 aa12.13□□□□□ -0.47
BEST3-209ENST00000548658 CSTF1Q05048 431 aaKnown RBP12.13□□□□□ -0.47
BEST3-209ENST00000548658 MTAPQ13126 283 aa12.13□□□□□ -0.47
BEST3-209ENST00000548658 ADAM9Q13443 819 aa12.13□□□□□ -0.47
BEST3-209ENST00000548658 PDGFRLQ15198 375 aa12.13□□□□□ -0.47
BEST3-209ENST00000548658 EDRF1Q3B7T1 1238 aa12.13□□□□□ -0.47
BEST3-209ENST00000548658 MDH1BQ5I0G3 518 aa12.13□□□□□ -0.47
BEST3-209ENST00000548658 SV2AQ7L0J3 742 aa12.13□□□□□ -0.47
BEST3-209ENST00000548658 MAML2Q8IZL2 1156 aaPredicted RBP12.13□□□□□ -0.47
BEST3-209ENST00000548658 CCDC150Q8NCX0 1101 aa12.13□□□□□ -0.47
BEST3-209ENST00000548658 PLEKHO2Q8TD55 490 aa12.13□□□□□ -0.47
BEST3-209ENST00000548658 SLITRK1Q96PX8 696 aa12.13□□□□□ -0.47
BEST3-209ENST00000548658 GSDMAQ96QA5 445 aa12.13□□□□□ -0.47
BEST3-209ENST00000548658 FAM83CQ9BQN1 747 aa12.13□□□□□ -0.47
BEST3-209ENST00000548658 TTLL2Q9BWV7 592 aa12.13□□□□□ -0.47
BEST3-209ENST00000548658 GDPD2Q9HCC8 539 aa12.13□□□□□ -0.47
BEST3-209ENST00000548658 GKN1Q9NS71 199 aa12.13□□□□□ -0.47
BEST3-209ENST00000548658 GTSE1Q9NYZ3 720 aa12.13□□□□□ -0.47
BEST3-209ENST00000548658 TRPM5Q9NZQ8 1165 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms