RNA–Protein interactions for RNA: ENST00000544550.5

SNHG1-220, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 636 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-220ENST00000544550 MRPL18Q9H0U6 180 aaKnown RBP4.53□□□□□ -1.68
SNHG1-220ENST00000544550 DUSP15Q9H1R2 295 aaPredicted RBP4.53□□□□□ -1.68
SNHG1-220ENST00000544550 TRPV4Q9HBA0 871 aa4.53□□□□□ -1.68
SNHG1-220ENST00000544550 RIC8AQ9NPQ8 531 aa4.53□□□□□ -1.68
SNHG1-220ENST00000544550 DIAPH3Q9NSV4 1193 aa4.53□□□□□ -1.68
SNHG1-220ENST00000544550 RBM12Q9NTZ6 932 aaKnown RBP4.53□□□□□ -1.68
SNHG1-220ENST00000544550 HCFC1R1Q9NWW0 138 aa4.53□□□□□ -1.68
SNHG1-220ENST00000544550 SUCLA2Q9P2R7 463 aaPredicted RBP4.53□□□□□ -1.68
SNHG1-220ENST00000544550 IPPQ9Y573 584 aa4.53□□□□□ -1.68
SNHG1-220ENST00000544550 C2orf16Q68DN1 1984 aa4.53□□□□□ -1.68
SNHG1-220ENST00000544550 WDR27A2RRH5 827 aa4.52□□□□□ -1.69
SNHG1-220ENST00000544550 SLC38A8A6NNN8 435 aa4.52□□□□□ -1.69
SNHG1-220ENST00000544550 FAM86B1E9PN63 330 aa4.52□□□□□ -1.69
SNHG1-220ENST00000544550 SPECC1L-ADORA2AF8WAN1 911 aa4.52□□□□□ -1.69
SNHG1-220ENST00000544550 CCER2I3L3R5 266 aa4.52□□□□□ -1.69
SNHG1-220ENST00000544550 ARNTLO00327 626 aa4.52□□□□□ -1.69
SNHG1-220ENST00000544550 CDX4O14627 284 aaPredicted RBP4.52□□□□□ -1.69
SNHG1-220ENST00000544550 CAPN9O14815 690 aa4.52□□□□□ -1.69
SNHG1-220ENST00000544550 PAX4O43316 350 aa4.52□□□□□ -1.69
SNHG1-220ENST00000544550 STK10O94804 968 aaKnown RBP4.52□□□□□ -1.69
SNHG1-220ENST00000544550 ERLIN2O94905 339 aa4.52□□□□□ -1.69
SNHG1-220ENST00000544550 CYP3A4P08684 503 aa4.52□□□□□ -1.69
SNHG1-220ENST00000544550 FAM86B2P0C5J1 330 aa4.52□□□□□ -1.69
SNHG1-220ENST00000544550 PLA2G2AP14555 144 aa4.52□□□□□ -1.69
SNHG1-220ENST00000544550 CEBPBP17676 345 aa4.52□□□□□ -1.69
SNHG1-220ENST00000544550 MCM4P33991 863 aa4.52□□□□□ -1.69
SNHG1-220ENST00000544550 OR1D2P34982 312 aa4.52□□□□□ -1.69
SNHG1-220ENST00000544550 ADCY7P51828 1080 aa4.52□□□□□ -1.69
SNHG1-220ENST00000544550 NAPAP54920 295 aa4.52□□□□□ -1.69
SNHG1-220ENST00000544550 AMPD2Q01433 879 aa4.52□□□□□ -1.69
SNHG1-220ENST00000544550 DRP2Q13474 957 aa4.52□□□□□ -1.69
SNHG1-220ENST00000544550 TARBP2Q15633 366 aaKnown RBP4.52□□□□□ -1.69
SNHG1-220ENST00000544550 SLC5A9Q2M3M2 681 aa4.52□□□□□ -1.69
SNHG1-220ENST00000544550 UAP1L1Q3KQV9 507 aa4.52□□□□□ -1.69
SNHG1-220ENST00000544550 MTERF2Q49AM1 385 aa4.52□□□□□ -1.69
SNHG1-220ENST00000544550 PRRT3Q5FWE3 981 aa4.52□□□□□ -1.69
SNHG1-220ENST00000544550 XKR3Q5GH77 459 aa4.52□□□□□ -1.69
SNHG1-220ENST00000544550 PRSS36Q5K4E3 855 aa4.52□□□□□ -1.69
SNHG1-220ENST00000544550 UBXN11Q5T124 520 aa4.52□□□□□ -1.69
SNHG1-220ENST00000544550 FAM171A1Q5VUB5 890 aa4.52□□□□□ -1.69
SNHG1-220ENST00000544550 IQCEQ6IPM2 695 aa4.52□□□□□ -1.69
SNHG1-220ENST00000544550 CWC27Q6UX04 472 aaKnown RBP4.52□□□□□ -1.69
SNHG1-220ENST00000544550 ZC3HAV1Q7Z2W4 902 aaKnown RBP4.52□□□□□ -1.69
SNHG1-220ENST00000544550 LURAP1LQ8IV03 231 aa4.52□□□□□ -1.69
SNHG1-220ENST00000544550 TMEM130Q8N3G9 435 aa4.52□□□□□ -1.69
SNHG1-220ENST00000544550 HDDC3Q8N4P3 179 aa4.52□□□□□ -1.69
SNHG1-220ENST00000544550 SMG8Q8ND04 991 aaKnown RBP4.52□□□□□ -1.69
SNHG1-220ENST00000544550 RDM1Q8NG50 284 aa4.52□□□□□ -1.69
SNHG1-220ENST00000544550 NCOA7Q8NI08 942 aa4.52□□□□□ -1.69
SNHG1-220ENST00000544550 HNRNPLLQ8WVV9 542 aaKnown RBP4.52□□□□□ -1.69
SNHG1-220ENST00000544550 PSPC1Q8WXF1 523 aaKnown RBP4.52□□□□□ -1.69
SNHG1-220ENST00000544550 LRIG1Q96JA1 1093 aa4.52□□□□□ -1.69
SNHG1-220ENST00000544550 RUSC1Q9BVN2 902 aa4.52□□□□□ -1.69
SNHG1-220ENST00000544550 SRRTQ9BXP5 876 aaKnown RBP4.52□□□□□ -1.69
SNHG1-220ENST00000544550 NUSAP1Q9BXS6 441 aaKnown RBP4.52□□□□□ -1.69
SNHG1-220ENST00000544550 IFT122Q9HBG6 1241 aa4.52□□□□□ -1.69
SNHG1-220ENST00000544550 DISC1Q9NRI5 854 aa4.52□□□□□ -1.69
SNHG1-220ENST00000544550 RAD18Q9NS91 495 aa4.52□□□□□ -1.69
SNHG1-220ENST00000544550 MTRRQ9UBK8 725 aa4.52□□□□□ -1.69
SNHG1-220ENST00000544550 EVLQ9UI08 416 aaPredicted RBP4.52□□□□□ -1.69
SNHG1-220ENST00000544550 PPT2Q9UMR5 302 aa4.52□□□□□ -1.69
SNHG1-220ENST00000544550 PCDHB14Q9Y5E9 798 aa4.52□□□□□ -1.69
SNHG1-220ENST00000544550 RAI2Q9Y5P3 530 aa4.52□□□□□ -1.69
SNHG1-220ENST00000544550 COL4A3BPQ9Y5P4 624 aa4.52□□□□□ -1.69
SNHG1-220ENST00000544550 KAT6AQ92794 2004 aa4.51□□□□□ -1.69
SNHG1-220ENST00000544550 IGLV3-22A0A075B6J6 115 aa4.51□□□□□ -1.69
SNHG1-220ENST00000544550 CCDC194A0A1B0GVG4 234 aa4.51□□□□□ -1.69
SNHG1-220ENST00000544550 ARHGEF37A1IGU5 675 aa4.51□□□□□ -1.69
SNHG1-220ENST00000544550 SMCO2A6NFE2 343 aa4.51□□□□□ -1.69
SNHG1-220ENST00000544550 CCDC69A6NI79 296 aa4.51□□□□□ -1.69
SNHG1-220ENST00000544550 HEPACAM2A8MVW5 462 aa4.51□□□□□ -1.69
SNHG1-220ENST00000544550 F8W810 466 aa4.51□□□□□ -1.69
SNHG1-220ENST00000544550 J3QKU1 62 aa4.51□□□□□ -1.69
SNHG1-220ENST00000544550 PRRG1O14668 218 aa4.51□□□□□ -1.69
SNHG1-220ENST00000544550 TMPRSS2O15393 492 aa4.51□□□□□ -1.69
SNHG1-220ENST00000544550 ASAP2O43150 1006 aa4.51□□□□□ -1.69
SNHG1-220ENST00000544550 TRAPPC3O43617 180 aa4.51□□□□□ -1.69
SNHG1-220ENST00000544550 EXTL3O43909 919 aa4.51□□□□□ -1.69
SNHG1-220ENST00000544550 DKC1O60832 514 aaKnown RBP eCLIP4.51□□□□□ -1.691e-36■■□□□ 12.2
SNHG1-220ENST00000544550 MAFO75444 373 aaPredicted RBP4.51□□□□□ -1.69
SNHG1-220ENST00000544550 APBB3O95704 486 aa4.51□□□□□ -1.69
SNHG1-220ENST00000544550 SPATA31C1P0DKV0 1188 aa4.51□□□□□ -1.69
SNHG1-220ENST00000544550 IMPDH2P12268 514 aa4.51□□□□□ -1.69
SNHG1-220ENST00000544550 HOXA11P31270 313 aaPredicted RBP4.51□□□□□ -1.69
SNHG1-220ENST00000544550 GBP1P32455 592 aa4.51□□□□□ -1.69
SNHG1-220ENST00000544550 ETFBP38117 255 aa4.51□□□□□ -1.69
SNHG1-220ENST00000544550 GATA4P43694 442 aa4.51□□□□□ -1.69
SNHG1-220ENST00000544550 GIPRP48546 466 aa4.51□□□□□ -1.69
SNHG1-220ENST00000544550 PXNP49023 591 aaPredicted RBP4.51□□□□□ -1.69
SNHG1-220ENST00000544550 ATXN3P54252 364 aaPredicted RBP4.51□□□□□ -1.69
SNHG1-220ENST00000544550 ID3Q02535 119 aa4.51□□□□□ -1.69
SNHG1-220ENST00000544550 FCHO2Q0JRZ9 810 aa4.51□□□□□ -1.69
SNHG1-220ENST00000544550 GRSF1Q12849 480 aaKnown RBP eCLIP4.51□□□□□ -1.69
SNHG1-220ENST00000544550 TUSC3Q13454 348 aa4.51□□□□□ -1.69
SNHG1-220ENST00000544550 DOC2BQ14184 412 aa4.51□□□□□ -1.69
SNHG1-220ENST00000544550 PON2Q15165 354 aa4.51□□□□□ -1.69
SNHG1-220ENST00000544550 FBXO43Q4G163 708 aa4.51□□□□□ -1.69
SNHG1-220ENST00000544550 ARHGAP29Q52LW3 1261 aa4.51□□□□□ -1.69
SNHG1-220ENST00000544550 USP39Q53GS9 565 aaKnown RBP4.51□□□□□ -1.69
SNHG1-220ENST00000544550 PMS2CLQ68D20 193 aa4.51□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms