RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 IKBKEQ14164 716 aa14.69□□□□□ -0.06
USP3-204ENST00000540797 HS6ST3Q8IZP7 471 aa14.69□□□□□ -0.06
USP3-204ENST00000540797 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP14.69□□□□□ -0.06
USP3-204ENST00000540797 USP13Q92995 863 aaPredicted RBP14.69□□□□□ -0.06
USP3-204ENST00000540797 CCDC124Q96CT7 223 aaKnown RBP14.69□□□□□ -0.06
USP3-204ENST00000540797 FOXP3Q9BZS1 431 aa14.69□□□□□ -0.06
USP3-204ENST00000540797 SLC25A13Q9UJS0 675 aa14.69□□□□□ -0.06
USP3-204ENST00000540797 MED1Q15648 1581 aaPredicted RBP14.69□□□□□ -0.06
USP3-204ENST00000540797 LACTBL1A8MY62 500 aa14.69□□□□□ -0.06
USP3-204ENST00000540797 ZBTB39O15060 712 aa14.69□□□□□ -0.06
USP3-204ENST00000540797 ACAT1P24752 427 aaKnown RBP14.69□□□□□ -0.06
USP3-204ENST00000540797 EFTUD2Q15029 972 aaKnown RBP eCLIP14.69□□□□□ -0.061e-7■■□□□ 13.5
USP3-204ENST00000540797 PDK2Q15119 407 aa14.69□□□□□ -0.06
USP3-204ENST00000540797 ZSWIM1Q9BR11 485 aa14.69□□□□□ -0.06
USP3-204ENST00000540797 TRIM45Q9H8W5 580 aaPredicted RBP14.69□□□□□ -0.06
USP3-204ENST00000540797 TLR8Q9NR97 1041 aaKnown RBP14.69□□□□□ -0.06
USP3-204ENST00000540797 PCDHGB4Q9UN71 923 aa14.69□□□□□ -0.06
USP3-204ENST00000540797 ADGRB2O60241 1585 aa14.69□□□□□ -0.06
USP3-204ENST00000540797 SPRP35270 261 aaPredicted RBP14.69□□□□□ -0.06
USP3-204ENST00000540797 SLC47A2Q86VL8 602 aa14.69□□□□□ -0.06
USP3-204ENST00000540797 HIPK4Q8NE63 616 aa14.69□□□□□ -0.06
USP3-204ENST00000540797 EMILIN2Q9BXX0 1053 aa14.69□□□□□ -0.06
USP3-204ENST00000540797 CRLS1Q9UJA2 301 aa14.69□□□□□ -0.06
USP3-204ENST00000540797 EPB41L3Q9Y2J2 1087 aaPredicted RBP14.69□□□□□ -0.06
USP3-204ENST00000540797 F8VZ95 297 aa14.69□□□□□ -0.06
USP3-204ENST00000540797 GYG2O15488 501 aa14.69□□□□□ -0.06
USP3-204ENST00000540797 GZMAP12544 262 aa14.69□□□□□ -0.06
USP3-204ENST00000540797 NDST1P52848 882 aa14.69□□□□□ -0.06
USP3-204ENST00000540797 GYS2P54840 703 aa14.69□□□□□ -0.06
USP3-204ENST00000540797 GEMP55040 296 aa14.69□□□□□ -0.06
USP3-204ENST00000540797 PHEXP78562 749 aa14.69□□□□□ -0.06
USP3-204ENST00000540797 KCNT1Q5JUK3 1230 aa14.69□□□□□ -0.06
USP3-204ENST00000540797 ZBTB41Q5SVQ8 909 aa14.69□□□□□ -0.06
USP3-204ENST00000540797 HERC6Q8IVU3 1022 aa14.69□□□□□ -0.06
USP3-204ENST00000540797 KIAA0895Q8NCT3 520 aa14.69□□□□□ -0.06
USP3-204ENST00000540797 TATDN2Q93075 761 aa14.69□□□□□ -0.06
USP3-204ENST00000540797 DNAJC7Q99615 494 aa14.69□□□□□ -0.06
USP3-204ENST00000540797 ACTR5Q9H9F9 607 aaPredicted RBP14.69□□□□□ -0.06
USP3-204ENST00000540797 ALG13Q9NP73 1137 aaKnown RBP14.69□□□□□ -0.06
USP3-204ENST00000540797 GPATCH2LQ9NWQ4 482 aa14.69□□□□□ -0.06
USP3-204ENST00000540797 NR2E3Q9Y5X4 410 aa14.69□□□□□ -0.06
USP3-204ENST00000540797 PRR23AA6NEV1 266 aa14.68□□□□□ -0.06
USP3-204ENST00000540797 FAM131BQ86XD5 332 aa14.68□□□□□ -0.06
USP3-204ENST00000540797 CLCA2Q9UQC9 943 aa14.68□□□□□ -0.06
USP3-204ENST00000540797 IPPQ9Y573 584 aa14.68□□□□□ -0.06
USP3-204ENST00000540797 SPAG6O75602 509 aa14.68□□□□□ -0.06
USP3-204ENST00000540797 HAUS5O94927 633 aa14.68□□□□□ -0.06
USP3-204ENST00000540797 DDX5P17844 614 aaKnown RBP14.68□□□□□ -0.06
USP3-204ENST00000540797 STIP1P31948 543 aaKnown RBP14.68□□□□□ -0.06
USP3-204ENST00000540797 KPNA1P52294 538 aaPredicted RBP14.68□□□□□ -0.06
USP3-204ENST00000540797 VSNL1P62760 191 aa14.68□□□□□ -0.06
USP3-204ENST00000540797 SFSWAPQ12872 951 aaKnown RBP14.68□□□□□ -0.06
USP3-204ENST00000540797 SLC13A5Q86YT5 568 aaPredicted RBP14.68□□□□□ -0.06
USP3-204ENST00000540797 USP38Q8NB14 1042 aa14.68□□□□□ -0.06
USP3-204ENST00000540797 COG1Q8WTW3 980 aa14.68□□□□□ -0.06
USP3-204ENST00000540797 CNPY3Q9BT09 278 aa14.68□□□□□ -0.06
USP3-204ENST00000540797 TFR2Q9UP52 801 aa14.68□□□□□ -0.06
USP3-204ENST00000540797 NFASCO94856 1347 aa14.68□□□□□ -0.06
USP3-204ENST00000540797 TMEM88BA6NKF7 163 aa14.68□□□□□ -0.06
USP3-204ENST00000540797 ITGA8P53708 1063 aa14.68□□□□□ -0.06
USP3-204ENST00000540797 BRSK2Q8IWQ3 736 aa14.68□□□□□ -0.06
USP3-204ENST00000540797 PPIL6Q8IXY8 311 aa14.68□□□□□ -0.06
USP3-204ENST00000540797 ZNF669Q96BR6 464 aaPredicted RBP14.68□□□□□ -0.06
USP3-204ENST00000540797 PURBQ96QR8 312 aaKnown RBP14.68□□□□□ -0.06
USP3-204ENST00000540797 VPS28Q9UK41 221 aa14.68□□□□□ -0.06
USP3-204ENST00000540797 FDFT1P37268 417 aa14.68□□□□□ -0.06
USP3-204ENST00000540797 COILP38432 576 aaPredicted RBP14.68□□□□□ -0.06
USP3-204ENST00000540797 MTM1Q13496 603 aa14.68□□□□□ -0.06
USP3-204ENST00000540797 PTK6Q13882 451 aa14.68□□□□□ -0.06
USP3-204ENST00000540797 ANKS3Q6ZW76 656 aa14.68□□□□□ -0.06
USP3-204ENST00000540797 SLC26A7Q8TE54 656 aa14.68□□□□□ -0.06
USP3-204ENST00000540797 COG4Q9H9E3 785 aa14.68□□□□□ -0.06
USP3-204ENST00000540797 TRAF3IP3Q9Y228 551 aa14.68□□□□□ -0.06
USP3-204ENST00000540797 GTPBP10A4D1E9 387 aaKnown RBP14.67□□□□□ -0.06
USP3-204ENST00000540797 RAD51CO43502 376 aa14.67□□□□□ -0.06
USP3-204ENST00000540797 RRM1P23921 792 aa14.67□□□□□ -0.06
USP3-204ENST00000540797 PLD1Q13393 1074 aa14.67□□□□□ -0.06
USP3-204ENST00000540797 DGKZQ13574 1117 aa14.67□□□□□ -0.06
USP3-204ENST00000540797 C3orf62Q6ZUJ4 267 aa14.67□□□□□ -0.06
USP3-204ENST00000540797 NT5DC4Q86YG4 428 aa14.67□□□□□ -0.06
USP3-204ENST00000540797 NLGN2Q8NFZ4 835 aa14.67□□□□□ -0.06
USP3-204ENST00000540797 CDK5RAP1Q96SZ6 601 aaKnown RBP14.67□□□□□ -0.06
USP3-204ENST00000540797 PORCNQ9H237 461 aa14.67□□□□□ -0.06
USP3-204ENST00000540797 CARD9Q9H257 536 aa14.67□□□□□ -0.06
USP3-204ENST00000540797 TASP1Q9H6P5 420 aa14.67□□□□□ -0.06
USP3-204ENST00000540797 PSMC3IPQ9P2W1 217 aaPredicted RBP14.67□□□□□ -0.06
USP3-204ENST00000540797 PIK3CDO00329 1044 aa14.67□□□□□ -0.06
USP3-204ENST00000540797 RNASEH1O60930 286 aaKnown RBP14.67□□□□□ -0.06
USP3-204ENST00000540797 RHOCP08134 193 aa14.67□□□□□ -0.06
USP3-204ENST00000540797 CHRM3P20309 590 aa14.67□□□□□ -0.06
USP3-204ENST00000540797 TIGD7Q6NT04 549 aaPredicted RBP14.67□□□□□ -0.06
USP3-204ENST00000540797 RIN2Q8WYP3 895 aaPredicted RBP14.67□□□□□ -0.06
USP3-204ENST00000540797 ZBTB45Q96K62 511 aaPredicted RBP14.67□□□□□ -0.06
USP3-204ENST00000540797 FBXO44Q9H4M3 255 aa14.67□□□□□ -0.06
USP3-204ENST00000540797 AP4E1Q9UPM8 1137 aa14.67□□□□□ -0.06
USP3-204ENST00000540797 UBIAD1Q9Y5Z9 338 aa14.67□□□□□ -0.06
USP3-204ENST00000540797 CDH16O75309 829 aa14.67□□□□□ -0.06
USP3-204ENST00000540797 PPFIA2O75334 1257 aa14.67□□□□□ -0.06
USP3-204ENST00000540797 SMIM10L2AP0DMW4 78 aa14.67□□□□□ -0.06
USP3-204ENST00000540797 SMIM10L2BP0DMW5 78 aa14.67□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms