RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 CAVIN1Q6NZI2 390 aaKnown RBP21.11■□□□□ 0.97
CPSF1-209ENST00000532725 FAM114A1Q8IWE2 563 aa21.11■□□□□ 0.97
CPSF1-209ENST00000532725 TRMT2BQ96GJ1 504 aaKnown RBP21.11■□□□□ 0.97
CPSF1-209ENST00000532725 GPR88Q9GZN0 384 aa21.11■□□□□ 0.97
CPSF1-209ENST00000532725 ATXN3LQ9H3M9 355 aa21.11■□□□□ 0.97
CPSF1-209ENST00000532725 NUMBLQ9Y6R0 609 aa21.11■□□□□ 0.97
CPSF1-209ENST00000532725 CCDC130P13994 396 aa21.1■□□□□ 0.97
CPSF1-209ENST00000532725 MTIF2P46199 727 aaKnown RBP21.1■□□□□ 0.97
CPSF1-209ENST00000532725 RAD23BP54727 409 aa21.1■□□□□ 0.97
CPSF1-209ENST00000532725 STX1AQ16623 288 aa21.1■□□□□ 0.97
CPSF1-209ENST00000532725 KLHL40Q2TBA0 621 aa21.1■□□□□ 0.97
CPSF1-209ENST00000532725 FAM78AQ5JUQ0 283 aa21.1■□□□□ 0.97
CPSF1-209ENST00000532725 C11orf57Q6ZUT1 292 aaPredicted RBP21.1■□□□□ 0.97
CPSF1-209ENST00000532725 MTSS1LQ765P7 747 aa21.1■□□□□ 0.97
CPSF1-209ENST00000532725 FAM35AQ86V20 835 aa21.1■□□□□ 0.97
CPSF1-209ENST00000532725 UBR7Q8N806 425 aa21.1■□□□□ 0.97
CPSF1-209ENST00000532725 SLC4A11Q8NBS3 891 aa21.1■□□□□ 0.97
CPSF1-209ENST00000532725 SLC2A14Q8TDB8 520 aa21.1■□□□□ 0.97
CPSF1-209ENST00000532725 CYFIP2Q96F07 1278 aa21.1■□□□□ 0.97
CPSF1-209ENST00000532725 NT5C1BQ96P26 610 aa21.1■□□□□ 0.97
CPSF1-209ENST00000532725 KCNK16Q96T55 309 aa21.1■□□□□ 0.97
CPSF1-209ENST00000532725 HNRNPABQ99729 332 aaKnown RBP21.1■□□□□ 0.97
CPSF1-209ENST00000532725 MED10Q9BTT4 135 aa21.1■□□□□ 0.97
CPSF1-209ENST00000532725 SMOC2Q9H3U7 446 aa21.1■□□□□ 0.97
CPSF1-209ENST00000532725 MAGED2Q9UNF1 606 aaPredicted RBP21.1■□□□□ 0.97
CPSF1-209ENST00000532725 NFE2L3Q9Y4A8 694 aa21.1■□□□□ 0.97
CPSF1-209ENST00000532725 TBXAS1P24557 533 aaPredicted RBP21.09■□□□□ 0.97
CPSF1-209ENST00000532725 ANXA13P27216 316 aa21.09■□□□□ 0.97
CPSF1-209ENST00000532725 CDC25CP30307 473 aa21.09■□□□□ 0.97
CPSF1-209ENST00000532725 ZNF394Q53GI3 561 aa21.09■□□□□ 0.97
CPSF1-209ENST00000532725 HSP90AA4PQ58FG1 418 aa21.09■□□□□ 0.97
CPSF1-209ENST00000532725 STXBP5Q5T5C0 1151 aa21.09■□□□□ 0.97
CPSF1-209ENST00000532725 TANGO2Q6ICL3 276 aa21.09■□□□□ 0.97
CPSF1-209ENST00000532725 UBALD2Q8IYN6 164 aa21.09■□□□□ 0.97
CPSF1-209ENST00000532725 TMEM176AQ96HP8 235 aa21.09■□□□□ 0.97
CPSF1-209ENST00000532725 HEXIM2Q96MH2 286 aaKnown RBP21.09■□□□□ 0.97
CPSF1-209ENST00000532725 ASB16Q96NS5 453 aa21.09■□□□□ 0.97
CPSF1-209ENST00000532725 C11orf16Q9NQ32 467 aa21.09■□□□□ 0.97
CPSF1-209ENST00000532725 FAM49BQ9NUQ9 324 aa21.09■□□□□ 0.97
CPSF1-209ENST00000532725 UXTQ9UBK9 157 aaPredicted RBP21.09■□□□□ 0.97
CPSF1-209ENST00000532725 PTPRDP23468 1912 aa21.09■□□□□ 0.97
CPSF1-209ENST00000532725 BEST1O76090 585 aa21.08■□□□□ 0.97
CPSF1-209ENST00000532725 USP46P62068 366 aa21.08■□□□□ 0.97
CPSF1-209ENST00000532725 TYRO3Q06418 890 aa21.08■□□□□ 0.97
CPSF1-209ENST00000532725 MAN2A1Q16706 1144 aa21.08■□□□□ 0.97
CPSF1-209ENST00000532725 PHLDB3Q6NSJ2 640 aa21.08■□□□□ 0.97
CPSF1-209ENST00000532725 TRIM67Q6ZTA4 783 aa21.08■□□□□ 0.97
CPSF1-209ENST00000532725 DENND5BQ6ZUT9 1274 aa21.08■□□□□ 0.97
CPSF1-209ENST00000532725 ZMIZ2Q8NF64 920 aa21.08■□□□□ 0.97
CPSF1-209ENST00000532725 SMARCD2Q92925 531 aa21.08■□□□□ 0.97
CPSF1-209ENST00000532725 KAT5Q92993 513 aa21.08■□□□□ 0.97
CPSF1-209ENST00000532725 SMARCD1Q96GM5 515 aa21.08■□□□□ 0.97
CPSF1-209ENST00000532725 SMOQ99835 787 aa21.08■□□□□ 0.97
CPSF1-209ENST00000532725 TUBGCP2Q9BSJ2 902 aa21.08■□□□□ 0.97
CPSF1-209ENST00000532725 CRACR2AQ9BSW2 395 aa21.08■□□□□ 0.97
CPSF1-209ENST00000532725 PLA2G2FQ9BZM2 168 aa21.08■□□□□ 0.97
CPSF1-209ENST00000532725 INTS2Q9H0H0 1204 aaKnown RBP21.08■□□□□ 0.97
CPSF1-209ENST00000532725 TASP1Q9H6P5 420 aa21.08■□□□□ 0.97
CPSF1-209ENST00000532725 TRPV4Q9HBA0 871 aa21.08■□□□□ 0.97
CPSF1-209ENST00000532725 CSNK1G1Q9HCP0 422 aa21.08■□□□□ 0.97
CPSF1-209ENST00000532725 ATP8B3O60423 1300 aa21.07■□□□□ 0.96
CPSF1-209ENST00000532725 KCNJ18B7U540 433 aa21.07■□□□□ 0.96
CPSF1-209ENST00000532725 GPR37L1O60883 481 aa21.07■□□□□ 0.96
CPSF1-209ENST00000532725 ECI2O75521 394 aa21.07■□□□□ 0.96
CPSF1-209ENST00000532725 AP1G2O75843 785 aa21.07■□□□□ 0.96
CPSF1-209ENST00000532725 TRIM21P19474 475 aaKnown RBP21.07■□□□□ 0.96
CPSF1-209ENST00000532725 ACO1P21399 889 aaKnown RBP21.07■□□□□ 0.96
CPSF1-209ENST00000532725 FCARP24071 287 aa21.07■□□□□ 0.96
CPSF1-209ENST00000532725 WEE1P30291 646 aa21.07■□□□□ 0.96
CPSF1-209ENST00000532725 YWHAEP62258 255 aaKnown RBP21.07■□□□□ 0.96
CPSF1-209ENST00000532725 GCNT1Q02742 428 aa21.07■□□□□ 0.96
CPSF1-209ENST00000532725 KCNJ12Q14500 433 aa21.07■□□□□ 0.96
CPSF1-209ENST00000532725 TCP11X2Q5H9J9 407 aa21.07■□□□□ 0.96
CPSF1-209ENST00000532725 MIIPQ5JXC2 388 aa21.07■□□□□ 0.96
CPSF1-209ENST00000532725 GPR158Q5T848 1215 aa21.07■□□□□ 0.96
CPSF1-209ENST00000532725 PPP1R26Q5T8A7 1209 aaPredicted RBP21.07■□□□□ 0.96
CPSF1-209ENST00000532725 RRAGAQ7L523 313 aa21.07■□□□□ 0.96
CPSF1-209ENST00000532725 ARHGEF19Q8IW93 802 aa21.07■□□□□ 0.96
CPSF1-209ENST00000532725 PPM1KQ8N3J5 372 aa21.07■□□□□ 0.96
CPSF1-209ENST00000532725 ZSCAN18Q8TBC5 510 aaPredicted RBP21.07■□□□□ 0.96
CPSF1-209ENST00000532725 ELSPBP1Q96BH3 223 aa21.07■□□□□ 0.96
CPSF1-209ENST00000532725 TTLL2Q9BWV7 592 aa21.07■□□□□ 0.96
CPSF1-209ENST00000532725 C1QTNF1Q9BXJ1 281 aa21.07■□□□□ 0.96
CPSF1-209ENST00000532725 SLC46A2Q9BY10 475 aa21.07■□□□□ 0.96
CPSF1-209ENST00000532725 DNAI2Q9GZS0 605 aa21.07■□□□□ 0.96
CPSF1-209ENST00000532725 ZFP14Q9HCL3 533 aa21.07■□□□□ 0.96
CPSF1-209ENST00000532725 DUSP12Q9UNI6 340 aa21.07■□□□□ 0.96
CPSF1-209ENST00000532725 TECTAO75443 2155 aa21.07■□□□□ 0.96
CPSF1-209ENST00000532725 GTPBP10A4D1E9 387 aaKnown RBP21.06■□□□□ 0.96
CPSF1-209ENST00000532725 SOBPA7XYQ1 873 aa21.06■□□□□ 0.96
CPSF1-209ENST00000532725 TNFRSF10BO14763 440 aa21.06■□□□□ 0.96
CPSF1-209ENST00000532725 NARSO43776 548 aaKnown RBP21.06■□□□□ 0.96
CPSF1-209ENST00000532725 TADA3O75528 432 aa21.06■□□□□ 0.96
CPSF1-209ENST00000532725 SLC9A1P19634 815 aa21.06■□□□□ 0.96
CPSF1-209ENST00000532725 PTMSP20962 102 aa21.06■□□□□ 0.96
CPSF1-209ENST00000532725 EEF1GP26641 437 aaKnown RBP21.06■□□□□ 0.96
CPSF1-209ENST00000532725 ADORA2BP29275 332 aa21.06■□□□□ 0.96
CPSF1-209ENST00000532725 CYP4F8P98187 520 aa21.06■□□□□ 0.96
CPSF1-209ENST00000532725 SIGLEC14Q08ET2 396 aa21.06■□□□□ 0.96
CPSF1-209ENST00000532725 VWA3BQ502W6 1294 aa21.06■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms