RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 C3orf62Q6ZUJ4 267 aa20.2■□□□□ 0.82
VPS28-213ENST00000530983 ACSS3Q9H6R3 686 aa20.2■□□□□ 0.82
VPS28-213ENST00000530983 NRBP2Q9NSY0 501 aa20.2■□□□□ 0.82
VPS28-213ENST00000530983 UTRNP46939 3433 aa20.2■□□□□ 0.82
VPS28-213ENST00000530983 TMEM63AO94886 807 aa20.2■□□□□ 0.82
VPS28-213ENST00000530983 KRT7P08729 469 aa20.2■□□□□ 0.82
VPS28-213ENST00000530983 KDELR1P24390 212 aa20.2■□□□□ 0.82
VPS28-213ENST00000530983 ALDH3A1P30838 453 aa20.2■□□□□ 0.82
VPS28-213ENST00000530983 PHBP35232 272 aa20.2■□□□□ 0.82
VPS28-213ENST00000530983 EFNA5P52803 228 aa20.2■□□□□ 0.82
VPS28-213ENST00000530983 TFAMQ00059 246 aaKnown RBP20.2■□□□□ 0.82
VPS28-213ENST00000530983 MTM1Q13496 603 aa20.2■□□□□ 0.82
VPS28-213ENST00000530983 MAPK6Q16659 721 aa20.2■□□□□ 0.82
VPS28-213ENST00000530983 ZC3H12AQ5D1E8 599 aaKnown RBP20.2■□□□□ 0.82
VPS28-213ENST00000530983 ZNF276Q8N554 614 aa20.2■□□□□ 0.82
VPS28-213ENST00000530983 TAB3Q8N5C8 712 aaPredicted RBP20.2■□□□□ 0.82
VPS28-213ENST00000530983 FBXO36Q8NEA4 188 aa20.2■□□□□ 0.82
VPS28-213ENST00000530983 SLC7A6OSQ96CW6 309 aaPredicted RBP20.2■□□□□ 0.82
VPS28-213ENST00000530983 PIM2Q9P1W9 311 aa20.2■□□□□ 0.82
VPS28-213ENST00000530983 ATP2A2P16615 1042 aaKnown RBP20.19■□□□□ 0.82
VPS28-213ENST00000530983 STAT5BP51692 787 aa20.19■□□□□ 0.82
VPS28-213ENST00000530983 AGGF1Q8N302 714 aaeCLIP20.19■□□□□ 0.82
VPS28-213ENST00000530983 TTC13Q8NBP0 860 aa20.19■□□□□ 0.82
VPS28-213ENST00000530983 INPP5DQ92835 1189 aa20.19■□□□□ 0.82
VPS28-213ENST00000530983 FRMD8P1Q9BZ68 369 aaPredicted RBP20.19■□□□□ 0.82
VPS28-213ENST00000530983 PLEKHG4Q58EX7 1191 aa20.19■□□□□ 0.82
VPS28-213ENST00000530983 CDCA2Q69YH5 1023 aaPredicted RBP20.19■□□□□ 0.82
VPS28-213ENST00000530983 UNC45BQ8IWX7 931 aa20.19■□□□□ 0.82
VPS28-213ENST00000530983 EMC1Q8N766 993 aa20.19■□□□□ 0.82
VPS28-213ENST00000530983 FNIP1Q8TF40 1166 aa20.19■□□□□ 0.82
VPS28-213ENST00000530983 SLC16A10Q8TF71 515 aa20.19■□□□□ 0.82
VPS28-213ENST00000530983 DCAKDQ8WVC6 231 aa20.19■□□□□ 0.82
VPS28-213ENST00000530983 RSAD2Q8WXG1 361 aa20.19■□□□□ 0.82
VPS28-213ENST00000530983 POLIQ9UNA4 740 aa20.19■□□□□ 0.82
VPS28-213ENST00000530983 CBX6O95503 412 aa20.18■□□□□ 0.82
VPS28-213ENST00000530983 SRGAP2CP0DJJ0 459 aa20.18■□□□□ 0.82
VPS28-213ENST00000530983 CDC25CP30307 473 aa20.18■□□□□ 0.82
VPS28-213ENST00000530983 POLR2BP30876 1174 aaKnown RBP20.18■□□□□ 0.82
VPS28-213ENST00000530983 GMPSP49915 693 aaPredicted RBP20.18■□□□□ 0.82
VPS28-213ENST00000530983 YWHAEP62258 255 aaKnown RBP20.18■□□□□ 0.82
VPS28-213ENST00000530983 GRIK3Q13003 919 aa20.18■□□□□ 0.82
VPS28-213ENST00000530983 MAF1Q9H063 256 aa20.18■□□□□ 0.82
VPS28-213ENST00000530983 C12orf65Q9H3J6 166 aaKnown RBP20.18■□□□□ 0.82
VPS28-213ENST00000530983 PEX10O60683 326 aa20.18■□□□□ 0.82
VPS28-213ENST00000530983 PRKCBP05771 671 aa20.18■□□□□ 0.82
VPS28-213ENST00000530983 CD19P15391 556 aa20.18■□□□□ 0.82
VPS28-213ENST00000530983 RAP1GAPP47736 663 aa20.18■□□□□ 0.82
VPS28-213ENST00000530983 HIRAP54198 1017 aaPredicted RBP20.18■□□□□ 0.82
VPS28-213ENST00000530983 PSMC1P62191 440 aaKnown RBP20.18■□□□□ 0.82
VPS28-213ENST00000530983 HADHQ16836 314 aaKnown RBP20.18■□□□□ 0.82
VPS28-213ENST00000530983 KLHL38Q2WGJ6 581 aa20.18■□□□□ 0.82
VPS28-213ENST00000530983 ZNF449Q6P9G9 518 aa20.18■□□□□ 0.82
VPS28-213ENST00000530983 CCDC125Q86Z20 511 aa20.18■□□□□ 0.82
VPS28-213ENST00000530983 THNSL1Q8IYQ7 743 aa20.18■□□□□ 0.82
VPS28-213ENST00000530983 TCP10LQ8TDR4 215 aa20.18■□□□□ 0.82
VPS28-213ENST00000530983 CPXM1Q96SM3 734 aa20.18■□□□□ 0.82
VPS28-213ENST00000530983 LHX5Q9H2C1 402 aa20.18■□□□□ 0.82
VPS28-213ENST00000530983 NPHS2Q9NP85 383 aa20.18■□□□□ 0.82
VPS28-213ENST00000530983 HOXC10Q9NYD6 342 aa20.18■□□□□ 0.82
VPS28-213ENST00000530983 AFG3L2Q9Y4W6 797 aa20.18■□□□□ 0.82
VPS28-213ENST00000530983 NUMBLQ9Y6R0 609 aa20.18■□□□□ 0.82
VPS28-213ENST00000530983 C2CD2LO14523 706 aa20.17■□□□□ 0.82
VPS28-213ENST00000530983 TCF7P36402 384 aaPredicted RBP20.17■□□□□ 0.82
VPS28-213ENST00000530983 LAMTOR4Q0VGL1 99 aa20.17■□□□□ 0.82
VPS28-213ENST00000530983 NLRP9Q7RTR0 991 aa20.17■□□□□ 0.82
VPS28-213ENST00000530983 BANPQ8N9N5 519 aa20.17■□□□□ 0.82
VPS28-213ENST00000530983 SPDL1Q96EA4 605 aa20.17■□□□□ 0.82
VPS28-213ENST00000530983 TBC1D10AQ9BXI6 508 aa20.17■□□□□ 0.82
VPS28-213ENST00000530983 METTL5Q9NRN9 209 aaKnown RBP20.17■□□□□ 0.82
VPS28-213ENST00000530983 SLC5A4Q9NY91 659 aa20.17■□□□□ 0.82
VPS28-213ENST00000530983 SLC17A7Q9P2U7 560 aa20.17■□□□□ 0.82
VPS28-213ENST00000530983 NXF1Q9UBU9 619 aaKnown RBP20.17■□□□□ 0.82
VPS28-213ENST00000530983 WDR91A4D1P6 747 aa20.16■□□□□ 0.82
VPS28-213ENST00000530983 GOLGA8RI6L899 631 aa20.16■□□□□ 0.82
VPS28-213ENST00000530983 CCNG1P51959 295 aa20.16■□□□□ 0.82
VPS28-213ENST00000530983 NRLP54845 237 aa20.16■□□□□ 0.82
VPS28-213ENST00000530983 SURF1Q15526 300 aa20.16■□□□□ 0.82
VPS28-213ENST00000530983 TAF5Q15542 800 aa20.16■□□□□ 0.82
VPS28-213ENST00000530983 BBS9Q3SYG4 887 aa20.16■□□□□ 0.82
VPS28-213ENST00000530983 TAF1BQ53T94 588 aaPredicted RBP20.16■□□□□ 0.82
VPS28-213ENST00000530983 SLC45A4Q5BKX6 768 aa20.16■□□□□ 0.82
VPS28-213ENST00000530983 SPDYAQ5MJ70 313 aa20.16■□□□□ 0.82
VPS28-213ENST00000530983 XYLT1Q86Y38 959 aa20.16■□□□□ 0.82
VPS28-213ENST00000530983 FAM71DQ8N9W8 422 aa20.16■□□□□ 0.82
VPS28-213ENST00000530983 RNF149Q8NC42 400 aa20.16■□□□□ 0.82
VPS28-213ENST00000530983 FAM13CQ8NE31 585 aa20.16■□□□□ 0.82
VPS28-213ENST00000530983 KLF6Q99612 283 aaPredicted RBP20.16■□□□□ 0.82
VPS28-213ENST00000530983 NKX1-2Q9UD57 310 aaPredicted RBP20.16■□□□□ 0.82
VPS28-213ENST00000530983 PCSK1NQ9UHG2 260 aa20.16■□□□□ 0.82
VPS28-213ENST00000530983 XPO7Q9UIA9 1087 aaKnown RBP20.16■□□□□ 0.82
VPS28-213ENST00000530983 IRX1P78414 480 aaPredicted RBP20.16■□□□□ 0.82
VPS28-213ENST00000530983 ANKRD20A2Q5SQ80 823 aa20.16■□□□□ 0.82
VPS28-213ENST00000530983 ANKRD20A1Q5TYW2 823 aa20.16■□□□□ 0.82
VPS28-213ENST00000530983 ANKRD20A3Q5VUR7 823 aa20.16■□□□□ 0.82
VPS28-213ENST00000530983 FAM160B1Q5W0V3 765 aa20.16■□□□□ 0.82
VPS28-213ENST00000530983 KANSL3Q9P2N6 904 aa20.16■□□□□ 0.82
VPS28-213ENST00000530983 SSC5DA1L4H1 1573 aa20.15■□□□□ 0.82
VPS28-213ENST00000530983 APOC4-APOC2K7ER74 178 aa20.15■□□□□ 0.82
VPS28-213ENST00000530983 TRAFD1O14545 582 aaPredicted RBP20.15■□□□□ 0.82
VPS28-213ENST00000530983 TM9SF1O15321 606 aa20.15■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms