RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 CLRN1P58418 232 aa3.8□□□□□ -1.8
CD44-229ENST00000528672 POU6F2P78424 691 aaPredicted RBP3.8□□□□□ -1.8
CD44-229ENST00000528672 SLC25A3Q00325 362 aa3.8□□□□□ -1.8
CD44-229ENST00000528672 FAM102AQ5T9C2 384 aaPredicted RBP3.8□□□□□ -1.8
CD44-229ENST00000528672 ANKRD45Q5TZF3 282 aa3.8□□□□□ -1.8
CD44-229ENST00000528672 TSHZ3Q63HK5 1081 aa3.8□□□□□ -1.8
CD44-229ENST00000528672 IGFL4Q6B9Z1 124 aa3.8□□□□□ -1.8
CD44-229ENST00000528672 RETSATQ6NUM9 610 aa3.8□□□□□ -1.8
CD44-229ENST00000528672 ZDHHC24Q6UX98 284 aa3.8□□□□□ -1.8
CD44-229ENST00000528672 KRBA2Q6ZNG9 492 aa3.8□□□□□ -1.8
CD44-229ENST00000528672 ZNF280BQ86YH2 543 aa3.8□□□□□ -1.8
CD44-229ENST00000528672 YAF2Q8IY57 180 aa3.8□□□□□ -1.8
CD44-229ENST00000528672 SLC15A4Q8N697 577 aa3.8□□□□□ -1.8
CD44-229ENST00000528672 AOPEPQ8N6M6 819 aa3.8□□□□□ -1.8
CD44-229ENST00000528672 DNAJC5GQ8N7S2 189 aa3.8□□□□□ -1.8
CD44-229ENST00000528672 VGLL2Q8N8G2 317 aa3.8□□□□□ -1.8
CD44-229ENST00000528672 GLIS1Q8NBF1 620 aa3.8□□□□□ -1.8
CD44-229ENST00000528672 STYXQ8WUJ0 223 aa3.8□□□□□ -1.8
CD44-229ENST00000528672 ST8SIA2Q92186 375 aa3.8□□□□□ -1.8
CD44-229ENST00000528672 SNX27Q96L92 541 aa3.8□□□□□ -1.8
CD44-229ENST00000528672 NEUROD6Q96NK8 337 aa3.8□□□□□ -1.8
CD44-229ENST00000528672 ADOQ96SZ5 270 aa3.8□□□□□ -1.8
CD44-229ENST00000528672 GDF15Q99988 308 aa3.8□□□□□ -1.8
CD44-229ENST00000528672 CNPPD1Q9BV87 410 aa3.8□□□□□ -1.8
CD44-229ENST00000528672 SLC26A6Q9BXS9 759 aa3.8□□□□□ -1.8
CD44-229ENST00000528672 IMPG2Q9BZV3 1241 aa3.8□□□□□ -1.8
CD44-229ENST00000528672 INO80BQ9C086 356 aaPredicted RBP3.8□□□□□ -1.8
CD44-229ENST00000528672 DDX24Q9GZR7 859 aaKnown RBP eCLIP3.8□□□□□ -1.8
CD44-229ENST00000528672 UNC45AQ9H3U1 944 aa3.8□□□□□ -1.8
CD44-229ENST00000528672 NECTIN3Q9NQS3 549 aa3.8□□□□□ -1.8
CD44-229ENST00000528672 RLIMQ9NVW2 624 aa3.8□□□□□ -1.8
CD44-229ENST00000528672 RGL1Q9NZL6 768 aa3.8□□□□□ -1.8
CD44-229ENST00000528672 IFT80Q9P2H3 777 aaPredicted RBP3.8□□□□□ -1.8
CD44-229ENST00000528672 IGSF9Q9P2J2 1179 aa3.8□□□□□ -1.8
CD44-229ENST00000528672 HDAC9Q9UKV0 1011 aa3.8□□□□□ -1.8
CD44-229ENST00000528672 CDYLQ9Y232 598 aa3.8□□□□□ -1.8
CD44-229ENST00000528672 TMX2Q9Y320 296 aa3.8□□□□□ -1.8
CD44-229ENST00000528672 USP15Q9Y4E8 981 aaPredicted RBP3.8□□□□□ -1.8
CD44-229ENST00000528672 PLEKHM1Q9Y4G2 1056 aa3.8□□□□□ -1.8
CD44-229ENST00000528672 DYTNA2CJ06 578 aa3.79□□□□□ -1.8
CD44-229ENST00000528672 TTC36A6NLP5 189 aa3.79□□□□□ -1.8
CD44-229ENST00000528672 PIP5K1BO14986 540 aa3.79□□□□□ -1.8
CD44-229ENST00000528672 DCLK1O15075 740 aa3.79□□□□□ -1.8
CD44-229ENST00000528672 SLC43A1O75387 559 aa3.79□□□□□ -1.8
CD44-229ENST00000528672 IPO13O94829 963 aaKnown RBP3.79□□□□□ -1.8
CD44-229ENST00000528672 INMTO95050 263 aa3.79□□□□□ -1.8
CD44-229ENST00000528672 GRPP07492 148 aa3.79□□□□□ -1.8
CD44-229ENST00000528672 PDHA1P08559 390 aa3.79□□□□□ -1.8
CD44-229ENST00000528672 RARBP10826 455 aa3.79□□□□□ -1.8
CD44-229ENST00000528672 XBP1P17861 261 aa3.79□□□□□ -1.8
CD44-229ENST00000528672 CNTFP26441 200 aa3.79□□□□□ -1.8
CD44-229ENST00000528672 IL1R2P27930 398 aa3.79□□□□□ -1.8
CD44-229ENST00000528672 GABRB3P28472 473 aa3.79□□□□□ -1.8
CD44-229ENST00000528672 SLC11A2P49281 568 aa3.79□□□□□ -1.8
CD44-229ENST00000528672 COPAP53621 1224 aa3.79□□□□□ -1.8
CD44-229ENST00000528672 EIF5P55010 431 aaKnown RBP3.79□□□□□ -1.8
CD44-229ENST00000528672 UCP3P55916 312 aa3.79□□□□□ -1.8
CD44-229ENST00000528672 POLE2P56282 527 aa3.79□□□□□ -1.8
CD44-229ENST00000528672 HSD11B2P80365 405 aa3.79□□□□□ -1.8
CD44-229ENST00000528672 FSTL1Q12841 308 aa3.79□□□□□ -1.8
CD44-229ENST00000528672 RRP1BQ14684 758 aaKnown RBP3.79□□□□□ -1.8
CD44-229ENST00000528672 CCDC96Q2M329 555 aa3.79□□□□□ -1.8
CD44-229ENST00000528672 ADCK5Q3MIX3 580 aa3.79□□□□□ -1.8
CD44-229ENST00000528672 AMOTQ4VCS5 1084 aa3.79□□□□□ -1.8
CD44-229ENST00000528672 DCAF17Q5H9S7 520 aaPredicted RBP3.79□□□□□ -1.8
CD44-229ENST00000528672 MIIPQ5JXC2 388 aa3.79□□□□□ -1.8
CD44-229ENST00000528672 FBXO47Q5MNV8 452 aa3.79□□□□□ -1.8
CD44-229ENST00000528672 DCAF12L1Q5VU92 463 aa3.79□□□□□ -1.8
CD44-229ENST00000528672 ARL6IP4Q66PJ3 421 aaKnown RBP3.79□□□□□ -1.8
CD44-229ENST00000528672 NAIF1Q69YI7 327 aaPredicted RBP3.79□□□□□ -1.8
CD44-229ENST00000528672 FAAH2Q6GMR7 532 aa3.79□□□□□ -1.8
CD44-229ENST00000528672 RNF207Q6ZRF8 634 aa3.79□□□□□ -1.8
CD44-229ENST00000528672 LRRC55Q6ZSA7 311 aa3.79□□□□□ -1.8
CD44-229ENST00000528672 KCTD20Q7Z5Y7 419 aa3.79□□□□□ -1.8
CD44-229ENST00000528672 MOGAT3Q86VF5 341 aa3.79□□□□□ -1.8
CD44-229ENST00000528672 PDILTQ8N807 584 aa3.79□□□□□ -1.8
CD44-229ENST00000528672 FAM46DQ8NEK8 389 aa3.79□□□□□ -1.8
CD44-229ENST00000528672 MDGA1Q8NFP4 955 aa3.79□□□□□ -1.8
CD44-229ENST00000528672 NLGN4YQ8NFZ3 816 aaPredicted RBP3.79□□□□□ -1.8
CD44-229ENST00000528672 OR56A3Q8NH54 315 aa3.79□□□□□ -1.8
CD44-229ENST00000528672 SLC30A5Q8TAD4 765 aa3.79□□□□□ -1.8
CD44-229ENST00000528672 DDX17Q92841 729 aaKnown RBP3.79□□□□□ -1.8
CD44-229ENST00000528672 SPSB4Q96A44 273 aa3.79□□□□□ -1.8
CD44-229ENST00000528672 NACC2Q96BF6 587 aa3.79□□□□□ -1.8
CD44-229ENST00000528672 MIEF2Q96C03 454 aa3.79□□□□□ -1.8
CD44-229ENST00000528672 MNTQ99583 582 aa3.79□□□□□ -1.8
CD44-229ENST00000528672 TMEM8AQ9HCN3 771 aa3.79□□□□□ -1.8
CD44-229ENST00000528672 VPS45Q9NRW7 570 aa3.79□□□□□ -1.8
CD44-229ENST00000528672 SMC4Q9NTJ3 1288 aa3.79□□□□□ -1.8
CD44-229ENST00000528672 KIF17Q9P2E2 1029 aa3.79□□□□□ -1.8
CD44-229ENST00000528672 SORCS3Q9UPU3 1222 aa3.79□□□□□ -1.8
CD44-229ENST00000528672 CLCA2Q9UQC9 943 aa3.79□□□□□ -1.8
CD44-229ENST00000528672 ITIH6Q6UXX5 1313 aa3.78□□□□□ -1.8
CD44-229ENST00000528672 A0A087WWL8 130 aa3.78□□□□□ -1.8
CD44-229ENST00000528672 UNC119BA6NIH7 251 aa3.78□□□□□ -1.8
CD44-229ENST00000528672 hCG_1984214I3L0E3 225 aa3.78□□□□□ -1.8
CD44-229ENST00000528672 CCER2I3L3R5 266 aa3.78□□□□□ -1.8
CD44-229ENST00000528672 EXOC5O00471 708 aa3.78□□□□□ -1.8
CD44-229ENST00000528672 RPS6KA4O75676 772 aa3.78□□□□□ -1.8
CD44-229ENST00000528672 RNASEH2AO75792 299 aaKnown RBP3.78□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms