RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 CITED4Q96RK1 184 aa7.92□□□□□ -1.14
CD44-228ENST00000528455 MDFIQ99750 246 aa7.92□□□□□ -1.14
CD44-228ENST00000528455 TMEM175Q9BSA9 504 aa7.92□□□□□ -1.14
CD44-228ENST00000528455 NAA15Q9BXJ9 866 aaKnown RBP7.92□□□□□ -1.14
CD44-228ENST00000528455 TTYH3Q9C0H2 523 aa7.92□□□□□ -1.14
CD44-228ENST00000528455 INTS2Q9H0H0 1204 aaKnown RBP7.92□□□□□ -1.14
CD44-228ENST00000528455 XYLT2Q9H1B5 865 aa7.92□□□□□ -1.14
CD44-228ENST00000528455 PRDM12Q9H4Q4 367 aa7.92□□□□□ -1.14
CD44-228ENST00000528455 CYP3A43Q9HB55 503 aa7.92□□□□□ -1.14
CD44-228ENST00000528455 SIX2Q9NPC8 291 aa7.92□□□□□ -1.14
CD44-228ENST00000528455 UBE2TQ9NPD8 197 aaPredicted RBP7.92□□□□□ -1.14
CD44-228ENST00000528455 GDAP2Q9NXN4 497 aa7.92□□□□□ -1.14
CD44-228ENST00000528455 GCNT4Q9P109 453 aa7.92□□□□□ -1.14
CD44-228ENST00000528455 CEP72Q9P209 647 aa7.92□□□□□ -1.14
CD44-228ENST00000528455 SIX4Q9UIU6 781 aa7.92□□□□□ -1.14
CD44-228ENST00000528455 DCTN4Q9UJW0 460 aa7.92□□□□□ -1.14
CD44-228ENST00000528455 YBX2Q9Y2T7 364 aaKnown RBP7.92□□□□□ -1.14
CD44-228ENST00000528455 INSL6Q9Y581 213 aa7.92□□□□□ -1.14
CD44-228ENST00000528455 TRANK1O15050 2925 aa7.92□□□□□ -1.14
CD44-228ENST00000528455 AKR1B15C9JRZ8 316 aaPredicted RBP7.91□□□□□ -1.14
CD44-228ENST00000528455 TMEM189-UBE2V1I3L0A0 370 aa7.91□□□□□ -1.14
CD44-228ENST00000528455 GJB5O95377 273 aa7.91□□□□□ -1.14
CD44-228ENST00000528455 CA3P07451 260 aa7.91□□□□□ -1.14
CD44-228ENST00000528455 CCDC172P0C7W6 258 aa7.91□□□□□ -1.14
CD44-228ENST00000528455 RARAP10276 462 aa7.91□□□□□ -1.14
CD44-228ENST00000528455 MYOGP15173 224 aa7.91□□□□□ -1.14
CD44-228ENST00000528455 POLR2BP30876 1174 aaKnown RBP7.91□□□□□ -1.14
CD44-228ENST00000528455 HNRNPH3P31942 346 aaKnown RBP7.91□□□□□ -1.14
CD44-228ENST00000528455 PIK3CAP42336 1068 aa7.91□□□□□ -1.14
CD44-228ENST00000528455 ALDH7A1P49419 539 aaKnown RBP7.91□□□□□ -1.14
CD44-228ENST00000528455 TAF6P49848 677 aa7.91□□□□□ -1.14
CD44-228ENST00000528455 CLCNKBP51801 687 aa7.91□□□□□ -1.14
CD44-228ENST00000528455 POLR2FP61218 127 aaKnown RBP7.91□□□□□ -1.14
CD44-228ENST00000528455 HTRA4P83105 476 aaPredicted RBP7.91□□□□□ -1.14
CD44-228ENST00000528455 RNASELQ05823 741 aaKnown RBP7.91□□□□□ -1.14
CD44-228ENST00000528455 SOX4Q06945 474 aaPredicted RBP7.91□□□□□ -1.14
CD44-228ENST00000528455 CCDC173Q0VFZ6 552 aa7.91□□□□□ -1.14
CD44-228ENST00000528455 SV2CQ496J9 727 aa7.91□□□□□ -1.14
CD44-228ENST00000528455 ZNF667Q5HYK9 610 aa7.91□□□□□ -1.14
CD44-228ENST00000528455 GLRA4Q5JXX5 417 aa7.91□□□□□ -1.14
CD44-228ENST00000528455 LYPD4Q6UWN0 246 aa7.91□□□□□ -1.14
CD44-228ENST00000528455 C1orf229Q6ZS94 237 aaPredicted RBP7.91□□□□□ -1.14
CD44-228ENST00000528455 LIMS2Q7Z4I7 341 aa7.91□□□□□ -1.14
CD44-228ENST00000528455 ZNF280BQ86YH2 543 aa7.91□□□□□ -1.14
CD44-228ENST00000528455 CNGA4Q8IV77 575 aa7.91□□□□□ -1.14
CD44-228ENST00000528455 CMTR2Q8IYT2 770 aaKnown RBP7.91□□□□□ -1.14
CD44-228ENST00000528455 GOLGA6L1Q8N7Z2 621 aa7.91□□□□□ -1.14
CD44-228ENST00000528455 OR8K1Q8NGG5 319 aa7.91□□□□□ -1.14
CD44-228ENST00000528455 CPLX3Q8WVH0 158 aa7.91□□□□□ -1.14
CD44-228ENST00000528455 FAM129BQ96TA1 746 aa7.91□□□□□ -1.14
CD44-228ENST00000528455 RAD9AQ99638 391 aa7.91□□□□□ -1.14
CD44-228ENST00000528455 COLEC11Q9BWP8 271 aa7.91□□□□□ -1.14
CD44-228ENST00000528455 LSM14BQ9BX40 385 aaKnown RBP7.91□□□□□ -1.14
CD44-228ENST00000528455 RBCK1Q9BYM8 510 aa7.91□□□□□ -1.14
CD44-228ENST00000528455 GANQ9H2C0 597 aa7.91□□□□□ -1.14
CD44-228ENST00000528455 FAM207AQ9NSI2 230 aaPredicted RBP7.91□□□□□ -1.14
CD44-228ENST00000528455 TBC1D13Q9NVG8 400 aa7.91□□□□□ -1.14
CD44-228ENST00000528455 AIPL1Q9NZN9 384 aa7.91□□□□□ -1.14
CD44-228ENST00000528455 GDF2Q9UK05 429 aaPredicted RBP7.91□□□□□ -1.14
CD44-228ENST00000528455 DNAJC12Q9UKB3 198 aa7.91□□□□□ -1.14
CD44-228ENST00000528455 PLAGL2Q9UPG8 496 aa7.91□□□□□ -1.14
CD44-228ENST00000528455 CNTN6Q9UQ52 1028 aa7.91□□□□□ -1.14
CD44-228ENST00000528455 NUB1Q9Y5A7 615 aa7.91□□□□□ -1.14
CD44-228ENST00000528455 GBF1Q92538 1859 aa7.91□□□□□ -1.14
CD44-228ENST00000528455 SCN1AP35498 2009 aa7.91□□□□□ -1.14
CD44-228ENST00000528455 ARHGEF37A1IGU5 675 aa7.9□□□□□ -1.14
CD44-228ENST00000528455 TBKBP1A7MCY6 615 aa7.9□□□□□ -1.14
CD44-228ENST00000528455 FOXN3O00409 490 aaPredicted RBP7.9□□□□□ -1.14
CD44-228ENST00000528455 DLL1O00548 723 aa7.9□□□□□ -1.14
CD44-228ENST00000528455 NRP1O14786 923 aa7.9□□□□□ -1.14
CD44-228ENST00000528455 TRAPPC3O43617 180 aa7.9□□□□□ -1.14
CD44-228ENST00000528455 MMP20O60882 483 aa7.9□□□□□ -1.14
CD44-228ENST00000528455 LRRN2O75325 713 aa7.9□□□□□ -1.14
CD44-228ENST00000528455 TACC1O75410 805 aa7.9□□□□□ -1.14
CD44-228ENST00000528455 B3GAT3O94766 335 aa7.9□□□□□ -1.14
CD44-228ENST00000528455 GYPCP04921 128 aa7.9□□□□□ -1.14
CD44-228ENST00000528455 GALTP07902 379 aa7.9□□□□□ -1.14
CD44-228ENST00000528455 CASP14P31944 242 aa7.9□□□□□ -1.14
CD44-228ENST00000528455 KRT9P35527 623 aa7.9□□□□□ -1.14
CD44-228ENST00000528455 STAT1P42224 750 aa7.9□□□□□ -1.14
CD44-228ENST00000528455 KLK7P49862 253 aa7.9□□□□□ -1.14
CD44-228ENST00000528455 BPIFB4P59827 614 aa7.9□□□□□ -1.14
CD44-228ENST00000528455 YWHAEP62258 255 aaKnown RBP7.9□□□□□ -1.14
CD44-228ENST00000528455 CDK17Q00537 523 aa7.9□□□□□ -1.14
CD44-228ENST00000528455 LRMPQ12912 555 aa7.9□□□□□ -1.14
CD44-228ENST00000528455 CUL2Q13617 745 aa7.9□□□□□ -1.14
CD44-228ENST00000528455 DRAP1Q14919 205 aaPredicted RBP7.9□□□□□ -1.14
CD44-228ENST00000528455 ZNF699Q32M78 642 aa7.9□□□□□ -1.14
CD44-228ENST00000528455 SCARA3Q6AZY7 606 aa7.9□□□□□ -1.14
CD44-228ENST00000528455 IQCEQ6IPM2 695 aa7.9□□□□□ -1.14
CD44-228ENST00000528455 SLCO4C1Q6ZQN7 724 aa7.9□□□□□ -1.14
CD44-228ENST00000528455 FAM71AQ8IYT1 594 aa7.9□□□□□ -1.14
CD44-228ENST00000528455 PPM1KQ8N3J5 372 aa7.9□□□□□ -1.14
CD44-228ENST00000528455 TC2NQ8N9U0 490 aa7.9□□□□□ -1.14
CD44-228ENST00000528455 TTC16Q8NEE8 873 aa7.9□□□□□ -1.14
CD44-228ENST00000528455 SPATA18Q8TC71 538 aa7.9□□□□□ -1.14
CD44-228ENST00000528455 ZNF560Q96MR9 790 aa7.9□□□□□ -1.14
CD44-228ENST00000528455 PANX2Q96RD6 677 aa7.9□□□□□ -1.14
CD44-228ENST00000528455 PI4K2AQ9BTU6 479 aa7.9□□□□□ -1.14
CD44-228ENST00000528455 BCO2Q9BYV7 579 aa7.9□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms